Wall clock time and date at job start Tue Mar 31 2020 14:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00301 * 2 1 4 4 C 1.52996 * 109.47369 * 125.00229 * 3 2 1 5 5 O 1.42904 * 109.47377 * 180.02562 * 4 3 2 6 6 C 1.35711 * 117.00220 * 180.02562 * 5 4 3 7 7 C 1.39002 * 119.90955 * 0.29057 * 6 5 4 8 8 C 1.37701 * 120.08650 * 180.25938 * 7 6 5 9 9 C 1.39741 * 119.90999 * 359.45180 * 8 7 6 10 10 C 1.47598 * 120.08325 * 180.29903 * 9 8 7 11 11 O 1.21585 * 120.00320 * 330.13841 * 10 9 8 12 12 N 1.34782 * 119.99755 * 150.14778 * 10 9 8 13 13 C 1.46504 * 119.99756 * 6.16070 * 12 10 9 14 14 C 1.50696 * 109.47361 * 98.23590 * 13 12 10 15 15 H 1.08001 * 119.99522 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00414 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00305 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99779 * 359.97438 * 16 14 13 19 19 H 1.48493 * 109.46888 * 90.00088 * 18 16 14 20 20 H 1.48494 * 109.47276 * 210.00517 * 18 16 14 21 21 H 1.48501 * 109.47018 * 330.00327 * 18 16 14 22 22 C 1.46498 * 120.00203 * 186.16425 * 12 10 9 23 23 C 1.52997 * 109.47275 * 91.20031 * 22 12 10 24 24 C 1.47202 * 109.47046 * 180.02562 * 23 22 12 25 25 N 9.61873 * 153.34479 * 293.54852 * 6 1 2 26 26 C 1.39735 * 119.82439 * 0.27389 * 9 8 7 27 27 C 1.37702 * 119.91066 * 0.02562 * 26 9 8 28 28 H 1.08001 * 120.00121 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99776 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00269 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46972 * 5.00366 * 3 2 1 32 32 H 1.08996 * 109.47532 * 245.00636 * 3 2 1 33 33 H 1.08999 * 109.46962 * 60.00130 * 4 3 2 34 34 H 1.09002 * 109.47019 * 300.00229 * 4 3 2 35 35 H 1.07998 * 119.95622 * 0.02562 * 7 6 5 36 36 H 1.07998 * 120.04767 * 179.72222 * 8 7 6 37 37 H 1.09002 * 109.46816 * 218.23525 * 13 12 10 38 38 H 1.08999 * 109.47366 * 338.23196 * 13 12 10 39 39 H 0.96996 * 120.00015 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47183 * 211.19990 * 22 12 10 41 41 H 1.09003 * 109.46815 * 331.19838 * 22 12 10 42 42 H 1.09003 * 109.46981 * 300.00082 * 23 22 12 43 43 H 1.08989 * 109.47212 * 60.00221 * 23 22 12 44 44 H 1.07995 * 120.04663 * 180.02562 * 26 9 8 45 45 H 1.07992 * 119.95793 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1815 5 8 3.7493 2.5708 1.1819 6 6 4.6583 2.7574 2.1721 7 6 4.8625 1.7633 3.1220 8 6 5.7801 1.9509 4.1313 9 6 6.5148 3.1380 4.1933 10 6 7.5042 3.3404 5.2698 11 8 7.3397 2.8142 6.3534 12 7 8.5898 4.1087 5.0514 13 6 8.7212 4.8510 3.7953 14 6 8.2847 6.2778 4.0068 15 1 7.9431 6.5993 4.9797 16 6 8.3203 7.1724 2.9583 17 7 7.9399 8.4176 3.1431 18 14 8.9105 6.6160 1.2756 19 1 7.7558 6.1179 0.4859 20 1 9.5376 7.7608 0.5675 21 1 9.9073 5.5270 1.4357 22 6 9.6385 4.2015 6.0702 23 6 10.6964 3.1267 5.8125 24 6 11.7497 3.2195 6.8366 25 7 12.5614 3.2918 7.6288 26 6 6.3108 4.1325 3.2332 27 6 5.3868 3.9397 2.2305 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.7400 0.5065 1.0919 34 1 2.4773 1.2355 2.1130 35 1 4.2979 0.8441 3.0704 36 1 5.9349 1.1800 4.8716 37 1 9.7615 4.8338 3.4702 38 1 8.0946 4.3886 3.0327 39 1 7.9646 9.0468 2.4054 40 1 10.1029 5.1866 6.0250 41 1 9.2006 4.0511 7.0570 42 1 10.2320 2.1415 5.8577 43 1 11.1342 3.2770 4.8259 44 1 6.8769 5.0511 3.2774 45 1 5.2288 4.7076 1.4879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195130911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:32 Heat of formation + Delta-G solvation = 6.108060 kcal Electronic energy + Delta-G solvation = -26996.497899 eV Core-core repulsion = 23173.502472 eV Total energy + Delta-G solvation = -3822.995428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63318 -40.59471 -38.32794 -37.85936 -36.99059 -36.01647 -34.76346 -33.14256 -32.09905 -31.08907 -30.07453 -29.70446 -25.81075 -25.15515 -24.54838 -23.33208 -22.73949 -20.72962 -20.47251 -19.18983 -19.02672 -18.48956 -18.18351 -17.36439 -17.16916 -16.73441 -16.28079 -15.97610 -15.89719 -15.71331 -15.39712 -15.25179 -14.76819 -14.62194 -14.57200 -14.38817 -14.15373 -13.80019 -13.61401 -13.59562 -13.42599 -13.25627 -13.07586 -12.71698 -12.65821 -12.50369 -12.19541 -12.04005 -11.99043 -11.81534 -11.69575 -11.61279 -11.40655 -10.82517 -10.72290 -10.27172 -9.89948 -9.54116 -9.15022 -8.28936 -6.37113 0.04716 0.41872 1.33266 1.45502 1.47850 1.55085 1.61956 1.78552 1.90052 2.20894 2.26175 2.36593 2.85375 3.05450 3.16465 3.70810 3.82362 3.93040 3.99149 4.10923 4.12198 4.13325 4.17980 4.34060 4.42380 4.44361 4.51197 4.55332 4.71383 4.81320 4.84673 4.85701 4.93416 5.01884 5.06978 5.10689 5.12235 5.28025 5.31318 5.42514 5.51567 5.68397 5.74429 5.81753 5.86687 6.16945 6.42853 6.55204 6.58501 6.73264 7.21039 7.32243 8.86236 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.003277 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.189143 B = 8543.051340 C =10444.772539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C -0.091 4.091 4 C 0.054 3.946 5 O -0.325 6.325 6 C 0.155 3.845 7 C -0.217 4.217 8 C -0.022 4.022 9 C -0.191 4.191 10 C 0.563 3.437 11 O -0.584 6.584 12 N -0.585 5.585 13 C 0.185 3.815 14 C -0.541 4.541 15 H 0.035 0.965 16 C 0.031 3.969 17 N -0.933 5.933 18 Si 0.917 3.083 19 H -0.256 1.256 20 H -0.289 1.289 21 H -0.227 1.227 22 C 0.120 3.880 23 C -0.030 4.030 24 C 0.244 3.756 25 N -0.490 5.490 26 C -0.077 4.077 27 C -0.182 4.182 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.145 0.855 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.270 0.730 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.177 0.823 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 -17.999 -9.582 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.179 4.179 3 C -0.128 4.128 4 C -0.021 4.021 5 O -0.239 6.239 6 C 0.108 3.892 7 C -0.235 4.235 8 C -0.041 4.041 9 C -0.195 4.195 10 C 0.354 3.646 11 O -0.467 6.467 12 N -0.313 5.313 13 C 0.064 3.936 14 C -0.579 4.579 15 H 0.054 0.946 16 C -0.170 4.170 17 N -0.571 5.571 18 Si 0.739 3.261 19 H -0.180 1.180 20 H -0.215 1.215 21 H -0.150 1.150 22 C -0.004 4.004 23 C -0.070 4.070 24 C -0.073 4.073 25 N -0.168 5.168 26 C -0.094 4.094 27 C -0.201 4.201 28 H 0.131 0.869 29 H 0.115 0.885 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.143 0.857 43 H 0.156 0.844 44 H 0.194 0.806 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.942 -17.853 -8.087 21.147 hybrid contribution -0.177 0.726 -0.628 0.976 sum -8.119 -17.127 -8.715 20.861 Atomic orbital electron populations 1.24102 0.95929 1.02825 0.99381 1.22787 0.96141 0.97622 1.01369 1.20655 0.97533 0.96952 0.97699 1.23056 0.94428 0.84193 1.00379 1.86009 1.50411 1.40542 1.46949 1.19310 0.88459 0.93814 0.87597 1.21333 1.04022 1.00961 0.97204 1.21117 0.91587 0.95279 0.96132 1.19809 1.02707 0.98126 0.98809 1.18449 0.81241 0.77782 0.87081 1.90679 1.77335 1.52588 1.26102 1.47679 1.19384 1.44940 1.19342 1.20603 0.99684 0.89962 0.83358 1.21401 1.44690 0.94435 0.97362 0.94649 1.25712 0.94087 0.94332 1.02875 1.70032 1.47652 1.05320 1.34097 0.86156 0.80907 0.79535 0.79482 1.17991 1.21452 1.14950 1.21210 0.87785 0.99164 0.92255 1.19716 0.89665 1.02748 0.94913 1.29252 0.93242 0.91529 0.93251 1.81236 1.13027 1.10442 1.12130 1.22943 0.94531 1.01007 0.90944 1.20536 0.99650 0.97551 1.02348 0.86886 0.88469 0.85701 0.90910 0.89833 0.90028 0.90932 0.81942 0.83762 0.92631 0.91006 0.92099 0.89556 0.90589 0.85666 0.84429 0.80627 0.85306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 14.32 67.78 0.97 -0.93 16 2 C -0.16 -1.75 9.52 25.65 0.24 -1.51 16 3 C -0.09 -1.26 6.03 29.85 0.18 -1.08 16 4 C 0.05 0.87 4.72 71.98 0.34 1.21 16 5 O -0.33 -7.99 10.12 -90.32 -0.91 -8.90 16 6 C 0.15 4.29 6.70 22.63 0.15 4.44 16 7 C -0.22 -5.22 9.01 22.33 0.20 -5.02 16 8 C -0.02 -0.63 9.59 22.51 0.22 -0.41 16 9 C -0.19 -6.65 5.58 -20.08 -0.11 -6.76 16 10 C 0.56 21.14 7.45 86.71 0.65 21.79 16 11 O -0.58 -23.85 16.24 -3.98 -0.06 -23.91 16 12 N -0.59 -20.86 2.47 -829.84 -2.05 -22.90 16 13 C 0.18 7.04 3.72 85.63 0.32 7.35 16 14 C -0.54 -26.29 8.03 25.60 0.21 -26.08 16 15 H 0.04 2.02 8.06 -2.91 -0.02 2.00 16 16 C 0.03 1.54 5.34 84.66 0.45 2.00 16 17 N -0.93 -52.38 13.96 21.45 0.30 -52.08 16 18 Si 0.92 36.30 27.35 68.60 1.88 38.18 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.23 -7.75 6.54 99.48 0.65 -7.10 16 22 C 0.12 3.69 5.43 86.38 0.47 4.16 16 23 C -0.03 -0.65 6.03 28.79 0.17 -0.48 16 24 C 0.24 6.48 15.44 89.44 1.38 7.86 16 25 N -0.49 -15.73 18.54 20.01 0.37 -15.36 16 26 C -0.08 -2.81 7.47 22.50 0.17 -2.64 16 27 C -0.18 -6.01 9.97 22.32 0.22 -5.79 16 28 H 0.11 0.85 8.06 -2.91 -0.02 0.83 16 29 H 0.10 1.00 7.84 -2.91 -0.02 0.98 16 30 H 0.13 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.07 1.08 7.79 -2.39 -0.02 1.06 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.05 7.64 -2.39 -0.02 1.03 16 34 H 0.07 1.06 7.67 -2.39 -0.02 1.05 16 35 H 0.16 2.70 6.28 -2.91 -0.02 2.68 16 36 H 0.14 3.62 7.92 -2.91 -0.02 3.60 16 37 H 0.06 1.91 7.19 -2.39 -0.02 1.89 16 38 H 0.07 2.67 3.50 -2.43 -0.01 2.66 16 39 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.09 2.76 8.08 -2.39 -0.02 2.74 16 41 H 0.08 2.49 7.31 -2.39 -0.02 2.48 16 42 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.18 7.37 2.90 -2.91 -0.01 7.36 16 45 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -65.73 382.84 6.70 -59.03 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.95 Total: 27.84 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.23 Total: -1.90 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -1.38 Total: -90.34 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.98 Total: -32.81 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 1.88 Total: 38.18 kcal Total: -65.73 6.70 -59.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195130911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.141 kcal (2) G-P(sol) polarization free energy of solvation -65.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds