Wall clock time and date at job start Tue Mar 31 2020 14:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46965 * 2 1 4 4 C 1.52993 * 109.46965 * 180.02562 * 3 2 1 5 5 O 1.42907 * 109.47123 * 179.97438 * 4 3 2 6 6 C 1.35683 * 117.00196 * 179.97438 * 5 4 3 7 7 C 1.38609 * 119.64369 * 180.25911 * 6 5 4 8 8 C 1.39229 * 119.01367 * 180.27396 * 7 6 5 9 9 N 1.39217 * 120.83394 * 179.75803 * 8 7 6 10 10 C 1.39823 * 120.00245 * 174.95138 * 9 8 7 11 11 C 1.38772 * 120.10479 * 254.80067 * 10 9 8 12 12 C 1.38181 * 119.99073 * 180.24720 * 11 10 9 13 13 C 1.38355 * 120.20643 * 359.72562 * 12 11 10 14 14 C 1.38169 * 120.21346 * 0.02562 * 13 12 11 15 15 C 1.38725 * 120.00316 * 359.97438 * 14 13 12 16 16 O 1.35790 * 120.10253 * 179.97438 * 15 14 13 17 17 C 1.34804 * 116.99664 * 5.65867 * 16 15 14 18 18 H 1.07998 * 120.00238 * 354.93092 * 17 16 15 19 19 C 1.38629 * 119.99635 * 174.93038 * 17 16 15 20 20 N 1.31574 * 120.00033 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99759 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47550 * 59.99452 * 21 19 17 23 23 H 1.48498 * 109.47069 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46724 * 299.99395 * 21 19 17 25 25 C 1.39668 * 118.32985 * 359.47669 * 8 7 6 26 26 C 1.37742 * 119.18938 * 0.25635 * 25 8 7 27 27 N 1.32089 * 120.91827 * 0.02562 * 26 25 8 28 28 H 1.08998 * 109.47319 * 60.00464 * 1 2 3 29 29 H 1.09003 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47900 * 300.00421 * 1 2 3 31 31 H 1.08996 * 109.47504 * 239.99847 * 2 1 3 32 32 H 1.09006 * 109.47112 * 119.99263 * 2 1 3 33 33 H 1.08996 * 109.47134 * 59.99620 * 3 2 1 34 34 H 1.09006 * 109.46603 * 299.99574 * 3 2 1 35 35 H 1.08996 * 109.47504 * 59.99847 * 4 3 2 36 36 H 1.08998 * 109.47319 * 299.99536 * 4 3 2 37 37 H 1.07994 * 120.48997 * 0.02562 * 7 6 5 38 38 H 0.97008 * 120.00042 * 354.94552 * 9 8 7 39 39 H 1.08001 * 120.00642 * 359.97216 * 11 10 9 40 40 H 1.08009 * 119.89844 * 179.74480 * 12 11 10 41 41 H 1.08010 * 119.89063 * 180.02562 * 13 12 11 42 42 H 1.08000 * 120.00034 * 180.02562 * 14 13 12 43 43 H 0.97001 * 119.99878 * 180.02562 * 20 19 17 44 44 H 1.07996 * 120.39892 * 180.27474 * 25 8 7 45 45 H 1.08006 * 119.54376 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5698 1.4426 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.3913 2.9677 -0.0013 7 6 5.9131 4.2519 0.0035 8 6 7.2953 4.4192 -0.0024 9 7 7.8600 5.6916 -0.0029 10 6 9.2466 5.8412 0.0977 11 6 9.8161 6.2679 1.2890 12 6 11.1862 6.4199 1.3842 13 6 11.9946 6.1424 0.2963 14 6 11.4370 5.7121 -0.8925 15 6 10.0626 5.5565 -0.9978 16 8 9.5124 5.1343 -2.1652 17 6 10.3626 4.7710 -3.1462 18 1 11.4266 4.9004 -3.0141 19 6 9.8710 4.2314 -4.3248 20 7 8.5748 4.0733 -4.4856 21 14 11.0492 3.7274 -5.6840 22 1 11.9783 2.6877 -5.1734 23 1 10.2784 3.1821 -6.8301 24 1 11.8274 4.9114 -6.1287 25 6 8.1010 3.2783 -0.0019 26 6 7.5063 2.0359 -0.0009 27 7 6.1912 1.9130 -0.0010 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 3.9329 0.9289 -0.8908 36 1 3.9336 0.9287 0.8891 37 1 5.2572 5.1098 0.0078 38 1 7.2916 6.4746 -0.0730 39 1 9.1881 6.4855 2.1404 40 1 11.6275 6.7560 2.3110 41 1 13.0650 6.2625 0.3764 42 1 12.0713 5.4960 -1.7395 43 1 8.2309 3.6954 -5.3101 44 1 9.1771 3.3693 -0.0019 45 1 8.1239 1.1499 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:52 Heat of formation + Delta-G solvation = -28.105225 kcal Electronic energy + Delta-G solvation = -27120.963685 eV Core-core repulsion = 23296.484658 eV Total energy + Delta-G solvation = -3824.479027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65030 -40.84776 -39.21273 -38.21397 -36.64646 -35.92841 -34.26000 -32.44747 -31.55545 -30.69271 -30.00499 -29.24078 -27.30236 -25.08373 -24.51297 -23.56874 -23.22192 -22.23001 -21.98977 -19.81400 -19.57147 -19.12105 -17.94296 -17.42899 -17.35365 -16.67442 -16.48673 -16.43590 -16.23351 -15.84710 -15.42320 -15.30553 -15.09311 -14.77397 -14.62985 -14.59306 -14.34036 -14.32152 -13.56653 -13.22034 -13.13922 -13.02188 -12.76931 -12.61852 -12.52306 -12.49093 -12.23844 -12.02777 -11.98833 -11.97000 -11.75958 -11.44789 -11.25993 -10.79044 -10.58789 -9.77596 -9.46572 -9.08438 -8.73968 -8.43780 -6.10984 0.33150 0.41185 0.66406 0.74320 1.33851 1.43650 1.48654 1.93529 2.16218 2.56720 2.83187 2.95662 3.16195 3.47994 3.48864 3.93804 3.94221 4.04544 4.15521 4.19323 4.23531 4.28795 4.35000 4.37357 4.49579 4.55412 4.63680 4.67214 4.72745 4.87927 4.88404 4.90849 5.01009 5.02909 5.09384 5.14060 5.19789 5.21993 5.31976 5.38993 5.45073 5.58306 5.62208 5.75723 5.98365 6.08158 6.33346 6.43342 6.75393 7.00435 7.02738 7.80606 8.76174 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011031 B = 0.003307 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.692081 B = 8464.674310 C =10445.866524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.113 4.113 4 C 0.070 3.930 5 O -0.317 6.317 6 C 0.340 3.660 7 C -0.279 4.279 8 C 0.290 3.710 9 N -0.660 5.660 10 C 0.042 3.958 11 C -0.069 4.069 12 C -0.184 4.184 13 C -0.065 4.065 14 C -0.245 4.245 15 C 0.115 3.885 16 O -0.205 6.205 17 C -0.411 4.411 18 H 0.100 0.900 19 C -0.015 4.015 20 N -0.910 5.910 21 Si 1.009 2.991 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.258 1.258 25 C -0.261 4.261 26 C 0.162 3.838 27 N -0.589 5.589 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.411 0.589 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.147 0.853 42 H 0.120 0.880 43 H 0.268 0.732 44 H 0.116 0.884 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -2.480 11.596 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.151 4.151 4 C -0.005 4.005 5 O -0.225 6.225 6 C 0.161 3.839 7 C -0.305 4.305 8 C 0.177 3.823 9 N -0.284 5.284 10 C -0.051 4.051 11 C -0.089 4.089 12 C -0.203 4.203 13 C -0.083 4.083 14 C -0.265 4.265 15 C 0.062 3.938 16 O -0.110 6.110 17 C -0.488 4.488 18 H 0.117 0.883 19 C -0.214 4.214 20 N -0.547 5.547 21 Si 0.829 3.171 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.286 4.286 26 C 0.009 3.991 27 N -0.317 5.317 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.165 0.835 38 H 0.249 0.751 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.165 0.835 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.134 0.866 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.007 -3.212 11.372 13.256 hybrid contribution 0.803 0.753 -1.259 1.672 sum -5.204 -2.459 10.113 11.636 Atomic orbital electron populations 1.21740 0.94217 1.02458 1.02223 1.21419 0.97050 0.94388 1.02745 1.21620 0.90897 0.99024 1.03540 1.22773 0.95536 0.80262 1.01914 1.86146 1.16630 1.31762 1.87994 1.19439 0.84062 0.89579 0.90772 1.20313 0.93217 0.96794 1.20219 1.17805 0.91029 0.86265 0.87183 1.41399 1.04284 1.04342 1.78395 1.16953 0.82411 1.13056 0.92703 1.21237 0.95990 0.97156 0.94479 1.21063 0.92406 1.06799 1.00045 1.21251 1.00826 0.94806 0.91379 1.21276 0.93786 1.10590 1.00841 1.20270 0.92967 0.93788 0.86789 1.84020 1.35484 1.72636 1.18813 1.21709 0.90468 1.42416 0.94161 0.88260 1.26403 0.98395 0.96261 1.00351 1.70212 1.13934 1.43257 1.27315 0.84780 0.77002 0.79256 0.76074 1.18230 1.20223 1.18244 1.21428 1.00360 0.92869 1.13945 1.22295 0.89148 0.96964 0.90690 1.67333 1.06404 1.32728 1.25247 0.92650 0.91562 0.92157 0.91820 0.91095 0.90430 0.91338 0.92994 0.91668 0.83488 0.75139 0.83751 0.82804 0.83539 0.86182 0.92328 0.86634 0.80801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -1.98 5.93 30.59 0.18 -1.79 16 3 C -0.11 -2.38 5.58 30.59 0.17 -2.21 16 4 C 0.07 1.98 5.31 71.98 0.38 2.36 16 5 O -0.32 -11.05 10.11 -90.01 -0.91 -11.96 16 6 C 0.34 13.27 7.48 84.70 0.63 13.90 16 7 C -0.28 -10.80 9.93 22.60 0.22 -10.57 16 8 C 0.29 11.84 6.53 38.55 0.25 12.09 16 9 N -0.66 -25.15 5.17 -179.68 -0.93 -26.08 16 10 C 0.04 1.64 4.93 38.31 0.19 1.83 16 11 C -0.07 -2.12 9.96 22.38 0.22 -1.89 16 12 C -0.18 -5.00 10.04 22.28 0.22 -4.78 16 13 C -0.06 -1.97 10.04 22.28 0.22 -1.74 16 14 C -0.25 -9.82 9.16 22.37 0.20 -9.61 16 15 C 0.12 5.29 5.54 22.70 0.13 5.41 16 16 O -0.20 -11.49 9.23 -22.92 -0.21 -11.70 16 17 C -0.41 -22.96 9.49 67.91 0.64 -22.31 16 18 H 0.10 5.08 5.21 -2.91 -0.02 5.07 16 19 C -0.02 -0.86 5.49 84.82 0.47 -0.39 16 20 N -0.91 -55.38 13.67 21.61 0.30 -55.08 16 21 Si 1.01 42.53 29.55 68.60 2.03 44.56 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 C -0.26 -11.00 9.04 22.50 0.20 -10.80 16 26 C 0.16 6.31 11.16 84.54 0.94 7.25 16 27 N -0.59 -23.15 9.21 -309.19 -2.85 -26.00 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.05 1.57 8.10 -2.39 -0.02 1.56 16 36 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 37 H 0.15 4.98 8.06 -2.91 -0.02 4.96 16 38 H 0.41 13.72 8.86 -92.70 -0.82 12.90 16 39 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 40 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 41 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.12 5.16 6.45 -2.91 -0.02 5.14 16 45 H 0.17 5.65 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -70.58 381.76 3.62 -66.97 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: 0.19 Total: 43.86 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 6.01 Total: -24.58 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.48 Total: -107.16 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -1.12 Total: -23.65 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -70.58 3.62 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.863 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds