Wall clock time and date at job start Tue Mar 31 2020 14:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46871 * 2 1 4 4 C 1.52998 * 109.46863 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.35684 * 117.00142 * 180.02562 * 5 4 3 7 7 C 1.38604 * 119.64859 * 179.73099 * 6 5 4 8 8 C 1.39223 * 119.01933 * 179.77603 * 7 6 5 9 9 N 1.39226 * 120.83400 * 180.26250 * 8 7 6 10 10 C 1.39824 * 120.00485 * 25.11145 * 9 8 7 11 11 C 1.38958 * 120.00971 * 213.47470 * 10 9 8 12 12 C 1.38001 * 119.99342 * 179.78967 * 11 10 9 13 13 C 1.38905 * 120.00365 * 0.48225 * 12 11 10 14 14 O 1.35786 * 119.99060 * 179.72777 * 13 12 11 15 15 C 1.34820 * 117.00083 * 185.85313 * 14 13 12 16 16 H 1.08001 * 119.99671 * 354.91496 * 15 14 13 17 17 C 1.38615 * 120.00082 * 174.91201 * 15 14 13 18 18 N 1.31585 * 120.00181 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99942 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47469 * 89.99815 * 19 17 15 21 21 H 1.48502 * 109.47247 * 210.00067 * 19 17 15 22 22 H 1.48509 * 109.47031 * 329.99724 * 19 17 15 23 23 C 1.38912 * 120.01709 * 359.74638 * 13 12 11 24 24 C 1.37993 * 120.00050 * 0.02562 * 23 13 12 25 25 C 1.39657 * 118.33208 * 0.48653 * 8 7 6 26 26 C 1.37753 * 119.19055 * 359.75017 * 25 8 7 27 27 N 1.32090 * 120.91459 * 0.02562 * 26 25 8 28 28 H 1.08996 * 109.47043 * 59.99977 * 1 2 3 29 29 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47041 * 299.99507 * 1 2 3 31 31 H 1.09002 * 109.46956 * 240.00014 * 2 1 3 32 32 H 1.09001 * 109.46962 * 120.00510 * 2 1 3 33 33 H 1.09002 * 109.47319 * 60.00236 * 3 2 1 34 34 H 1.08996 * 109.47306 * 299.99862 * 3 2 1 35 35 H 1.09000 * 109.47867 * 300.00213 * 4 3 2 36 36 H 1.09000 * 109.47219 * 60.00698 * 4 3 2 37 37 H 1.07996 * 120.48768 * 359.97438 * 7 6 5 38 38 H 0.97007 * 120.00028 * 205.11298 * 9 8 7 39 39 H 1.08005 * 120.00426 * 359.97438 * 11 10 9 40 40 H 1.08000 * 119.99481 * 180.22746 * 12 11 10 41 41 H 0.97000 * 120.00106 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.99700 * 180.02562 * 23 13 12 43 43 H 1.08006 * 120.00210 * 179.97438 * 24 23 13 44 44 H 1.08000 * 120.40713 * 179.77653 * 25 8 7 45 45 H 1.07998 * 119.54911 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3914 2.9676 0.0000 7 6 5.9133 4.2516 -0.0063 8 6 7.2954 4.4190 -0.0015 9 7 7.8602 5.6915 -0.0020 10 6 7.1398 6.7764 0.5070 11 6 7.2953 8.0384 -0.0535 12 6 6.5809 9.1081 0.4463 13 6 5.7139 8.9253 1.5161 14 8 5.0153 9.9791 2.0112 15 6 4.2854 9.7612 3.1237 16 1 4.2091 8.7645 3.5328 17 6 3.6331 10.8162 3.7423 18 7 3.7266 12.0305 3.2442 19 14 2.6224 10.5144 5.2841 20 1 3.4867 10.6719 6.4813 21 1 1.5084 11.4944 5.3454 22 1 2.0686 9.1368 5.2511 23 6 5.5618 7.6648 2.0798 24 6 6.2725 6.5940 1.5773 25 6 8.1012 3.2782 -0.0010 26 6 7.5065 2.0357 0.0000 27 7 6.1913 1.9127 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9331 0.9288 0.8908 36 1 3.9337 0.9286 -0.8892 37 1 5.2575 5.1096 -0.0115 38 1 8.7536 5.8256 -0.3555 39 1 7.9730 8.1815 -0.8823 40 1 6.6989 10.0882 0.0083 41 1 3.2704 12.7689 3.6774 42 1 4.8874 7.5230 2.9113 43 1 6.1545 5.6140 2.0158 44 1 9.1773 3.3691 -0.0010 45 1 8.1240 1.1497 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:00 Heat of formation + Delta-G solvation = -30.372582 kcal Electronic energy + Delta-G solvation = -26377.801451 eV Core-core repulsion = 22553.224104 eV Total energy + Delta-G solvation = -3824.577347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75005 -40.82527 -39.56413 -38.51812 -36.33271 -35.91315 -34.22010 -32.26670 -31.76104 -31.65139 -29.91314 -29.00153 -27.27379 -25.13873 -24.49286 -23.89356 -23.21099 -22.25793 -21.98035 -20.00249 -19.44928 -19.16119 -18.24537 -17.47454 -17.40915 -16.74994 -16.59955 -16.30650 -16.01357 -15.87608 -15.52554 -15.38873 -15.06851 -14.84577 -14.66698 -14.51258 -14.35816 -14.18125 -13.67243 -13.41398 -13.31701 -13.12137 -13.08806 -12.79957 -12.71947 -12.43011 -12.14240 -12.08037 -12.01120 -11.99168 -11.80605 -11.47193 -11.25130 -10.82055 -10.61030 -9.90497 -9.78689 -9.48015 -8.47116 -8.26848 -6.12889 0.19726 0.29289 0.48426 0.85443 1.34815 1.43515 1.51585 1.93939 2.17451 2.38352 2.75869 2.91519 3.14135 3.45516 3.52321 3.89661 3.92162 3.98330 4.01837 4.08933 4.10590 4.27641 4.28727 4.36176 4.44737 4.48076 4.53991 4.61073 4.62901 4.85099 4.85880 4.88745 4.94505 5.00143 5.04915 5.10442 5.14967 5.20080 5.30041 5.33438 5.41351 5.43976 5.49734 5.65503 5.84735 6.01862 6.31363 6.38688 6.74366 6.98152 6.99642 7.78105 8.76117 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008683 B = 0.003009 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.087200 B = 9303.859952 C =11959.358099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.074 3.926 5 O -0.328 6.328 6 C 0.335 3.665 7 C -0.271 4.271 8 C 0.263 3.737 9 N -0.657 5.657 10 C 0.088 3.912 11 C -0.090 4.090 12 C -0.172 4.172 13 C 0.099 3.901 14 O -0.229 6.229 15 C -0.411 4.411 16 H 0.098 0.902 17 C -0.021 4.021 18 N -0.919 5.919 19 Si 1.015 2.985 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.256 1.256 23 C -0.215 4.215 24 C -0.097 4.097 25 C -0.257 4.257 26 C 0.165 3.835 27 N -0.584 5.584 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.119 0.881 38 H 0.426 0.574 39 H 0.160 0.840 40 H 0.125 0.875 41 H 0.273 0.727 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.169 0.831 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -24.235 -7.338 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.158 4.158 4 C -0.001 4.001 5 O -0.236 6.236 6 C 0.158 3.842 7 C -0.297 4.297 8 C 0.153 3.847 9 N -0.282 5.282 10 C -0.007 4.007 11 C -0.111 4.111 12 C -0.191 4.191 13 C 0.048 3.952 14 O -0.136 6.136 15 C -0.488 4.488 16 H 0.116 0.884 17 C -0.219 4.219 18 N -0.558 5.558 19 Si 0.834 3.166 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.180 1.180 23 C -0.235 4.235 24 C -0.118 4.118 25 C -0.281 4.281 26 C 0.011 3.989 27 N -0.311 5.311 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.137 0.863 38 H 0.266 0.734 39 H 0.178 0.822 40 H 0.143 0.857 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.187 0.813 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.595 -24.373 -7.334 25.864 hybrid contribution -0.048 1.245 0.637 1.399 sum 4.548 -23.128 -6.697 24.504 Atomic orbital electron populations 1.21766 0.94775 1.02452 1.01992 1.21392 0.96635 0.94161 1.03023 1.21653 0.91882 0.99097 1.03142 1.22755 0.94948 0.79998 1.02390 1.86218 1.17543 1.32101 1.87700 1.19524 0.84011 0.89568 0.91077 1.20663 0.95151 0.96094 1.17778 1.17819 0.90743 0.86126 0.89970 1.41643 1.18625 1.02336 1.65566 1.17305 0.99558 0.87893 0.95911 1.20729 1.00429 0.90202 0.99696 1.20317 0.99710 1.00475 0.98644 1.19883 0.92519 0.87909 0.94853 1.83945 1.55361 1.33128 1.41141 1.21756 1.27725 0.96748 1.02540 0.88425 1.26508 0.98904 0.93877 1.02567 1.70183 1.43373 1.00579 1.41626 0.84644 0.77283 0.79016 0.75658 1.18757 1.19465 1.17958 1.21033 1.05485 0.92505 1.04432 1.20687 0.97923 0.97902 0.95276 1.21888 1.02161 0.90933 1.13121 1.22778 0.88515 0.98016 0.89611 1.67439 1.07539 1.32205 1.23928 0.92638 0.91377 0.92853 0.90918 0.91164 0.91668 0.91327 0.91750 0.91444 0.86341 0.73419 0.82216 0.85668 0.91838 0.86369 0.86117 0.81323 0.78676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.11 -1.57 5.93 30.59 0.18 -1.39 16 3 C -0.12 -2.24 5.58 30.59 0.17 -2.07 16 4 C 0.07 1.65 5.31 71.98 0.38 2.03 16 5 O -0.33 -9.72 10.11 -90.03 -0.91 -10.63 16 6 C 0.34 9.79 7.48 84.70 0.63 10.42 16 7 C -0.27 -8.11 7.96 22.59 0.18 -7.93 16 8 C 0.26 6.38 6.08 38.55 0.23 6.61 16 9 N -0.66 -15.12 5.46 -179.97 -0.98 -16.11 16 10 C 0.09 2.75 5.90 38.21 0.23 2.97 16 11 C -0.09 -2.82 9.96 22.39 0.22 -2.60 16 12 C -0.17 -6.97 9.98 22.37 0.22 -6.75 16 13 C 0.10 4.87 6.65 22.59 0.15 5.02 16 14 O -0.23 -13.70 9.76 -23.03 -0.22 -13.93 16 15 C -0.41 -24.09 9.48 67.91 0.64 -23.44 16 16 H 0.10 5.31 5.20 -2.91 -0.02 5.29 16 17 C -0.02 -1.20 5.49 84.82 0.47 -0.73 16 18 N -0.92 -56.45 13.67 21.61 0.30 -56.16 16 19 Si 1.01 43.34 29.55 68.60 2.03 45.36 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 23 C -0.21 -9.54 9.16 22.37 0.20 -9.33 16 24 C -0.10 -3.55 7.82 22.39 0.18 -3.38 16 25 C -0.26 -4.54 10.03 22.50 0.23 -4.32 16 26 C 0.17 2.99 11.17 84.54 0.94 3.94 16 27 N -0.58 -14.47 9.21 -309.18 -2.85 -17.32 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.12 4.11 6.50 -2.91 -0.02 4.10 16 38 H 0.43 6.81 8.91 -92.70 -0.83 5.99 16 39 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.12 5.44 5.63 -2.91 -0.02 5.42 16 43 H 0.12 4.18 6.73 -2.91 -0.02 4.16 16 44 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -73.53 379.69 3.52 -70.01 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.19 Total: 30.91 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 5.98 Total: -32.14 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -3.53 Total: -89.59 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.14 Total: -24.56 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -73.53 3.52 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.633 kcal (2) G-P(sol) polarization free energy of solvation -73.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds