Wall clock time and date at job start Tue Mar 31 2020 14:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47209 * 2 1 4 4 C 1.52999 * 109.46757 * 239.99971 * 2 1 3 5 5 O 1.42901 * 109.47258 * 120.00248 * 2 1 3 6 6 C 1.42898 * 113.99852 * 59.99581 * 5 2 1 7 7 C 1.50698 * 109.47236 * 180.02562 * 6 5 2 8 8 C 1.38319 * 119.88294 * 89.99487 * 7 6 5 9 9 C 1.38016 * 120.12760 * 179.72640 * 8 7 6 10 10 C 1.39343 * 119.87403 * 0.27901 * 9 8 7 11 11 C 1.48381 * 120.12298 * 179.97438 * 10 9 8 12 12 C 1.38667 * 120.01691 * 129.99705 * 11 10 9 13 13 C 1.40549 * 119.65513 * 179.97438 * 12 11 10 14 14 C 1.41348 * 120.15566 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99548 * 330.16893 * 14 13 12 16 16 C 1.39900 * 119.99967 * 150.16902 * 14 13 12 17 17 N 1.30859 * 119.99460 * 161.72689 * 16 14 13 18 18 Si 1.86800 * 120.00175 * 341.73097 * 16 14 13 19 19 H 1.48500 * 109.47008 * 95.41613 * 18 16 14 20 20 H 1.48503 * 109.46919 * 215.41691 * 18 16 14 21 21 H 1.48500 * 109.47054 * 335.41498 * 18 16 14 22 22 C 1.40849 * 119.69051 * 0.02562 * 13 12 11 23 23 C 1.37552 * 120.02235 * 0.02562 * 22 13 12 24 24 C 1.38763 * 120.34773 * 359.69740 * 23 22 13 25 25 F 1.35101 * 119.84558 * 180.29984 * 24 23 22 26 26 C 1.39341 * 119.75920 * 359.97438 * 10 9 8 27 27 C 1.38019 * 119.87711 * 0.02562 * 26 10 9 28 28 H 1.09009 * 109.46702 * 300.00138 * 1 2 3 29 29 H 1.09003 * 109.47188 * 59.99676 * 1 2 3 30 30 H 1.08991 * 109.47463 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46713 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46746 * 300.00017 * 3 2 1 33 33 H 1.08994 * 109.46918 * 60.00387 * 3 2 1 34 34 H 1.09001 * 109.47349 * 300.00487 * 4 2 1 35 35 H 1.09003 * 109.46983 * 60.00228 * 4 2 1 36 36 H 1.08999 * 109.47207 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47201 * 59.99907 * 6 5 2 38 38 H 1.09002 * 109.47267 * 300.00198 * 6 5 2 39 39 H 1.08008 * 119.93623 * 0.02562 * 8 7 6 40 40 H 1.07994 * 120.06507 * 180.25906 * 9 8 7 41 41 H 1.07994 * 120.17231 * 0.02562 * 12 11 10 42 42 H 0.97003 * 119.99465 * 179.97438 * 17 16 14 43 43 H 1.07994 * 119.98925 * 179.97438 * 22 13 12 44 44 H 1.08000 * 119.82570 * 179.97438 * 23 22 13 45 45 H 1.08001 * 120.06650 * 179.97438 * 26 10 9 46 46 H 1.07998 * 119.94131 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1410 -2.6445 2.5256 8 6 1.4160 -2.5766 3.7017 9 6 1.9182 -3.1375 4.8584 10 6 3.1607 -3.7680 4.8413 11 6 3.7061 -4.3725 6.0819 12 6 4.1844 -5.6739 6.0672 13 6 4.6999 -6.2387 7.2465 14 6 5.1898 -7.5646 7.2436 15 1 4.7722 -8.2930 6.5644 16 6 6.2155 -7.9332 8.1206 17 7 6.4288 -9.1973 8.3835 18 14 7.2805 -6.6210 8.9165 19 1 6.7417 -6.2947 10.2612 20 1 8.6709 -7.1255 9.0493 21 1 7.2757 -5.3999 8.0715 22 6 4.7250 -5.4777 8.4314 23 6 4.2462 -4.1882 8.4315 24 6 3.7423 -3.6274 7.2665 25 9 3.2801 -2.3580 7.2767 26 6 3.8891 -3.8290 3.6551 27 6 3.3773 -3.2646 2.5042 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 1.9490 -2.5916 0.4007 38 1 0.4958 -2.0777 1.2907 39 1 0.4529 -2.0878 3.7137 40 1 1.3494 -3.0875 5.7751 41 1 4.1618 -6.2503 5.1541 42 1 7.1402 -9.4529 8.9913 43 1 5.1197 -5.9070 9.3404 44 1 4.2666 -3.6077 9.3419 45 1 4.8529 -4.3161 3.6363 46 1 3.9409 -3.3116 1.5841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240942423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:45 Heat of formation + Delta-G solvation = -66.461306 kcal Electronic energy + Delta-G solvation = -26720.201208 eV Core-core repulsion = 22874.138975 eV Total energy + Delta-G solvation = -3846.062233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -47.68842 -39.63846 -38.71898 -37.45227 -34.16827 -33.57863 -32.14356 -30.72715 -30.15513 -29.34508 -27.77375 -27.70813 -25.60724 -24.90584 -22.51373 -22.14702 -20.81815 -20.33958 -20.13756 -17.66732 -16.76884 -16.73677 -16.18013 -15.77927 -15.50521 -15.06117 -14.94843 -14.68142 -14.42960 -14.23184 -13.72793 -13.69163 -13.49250 -13.10995 -13.09623 -12.86532 -12.69764 -12.45055 -12.32325 -12.26736 -12.12083 -12.02514 -11.98476 -11.73506 -11.50455 -11.29943 -10.94281 -10.90686 -10.66313 -10.53045 -10.29773 -10.22760 -9.71037 -9.66656 -9.27878 -8.67460 -8.64270 -7.80666 -7.44975 -7.07946 -4.60206 1.32570 1.71439 2.35187 2.41464 3.02082 3.13162 3.23329 3.53378 3.87608 4.13933 4.32031 4.50426 4.55068 4.73137 4.92885 4.96559 5.09643 5.14825 5.19859 5.20778 5.29366 5.34711 5.35599 5.43709 5.49535 5.50714 5.54018 5.60843 5.74233 5.75712 5.81126 5.90005 5.98066 5.98176 6.12857 6.30585 6.35462 6.48128 6.58649 6.62292 6.77947 6.90747 6.96017 7.12784 7.16253 7.25147 7.33549 7.40578 7.65391 7.90576 8.19303 8.45081 8.63628 9.93797 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.002421 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.321142 B =11564.424451 C =12017.678757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.103 3.897 7 C -0.104 4.104 8 C -0.100 4.100 9 C -0.105 4.105 10 C -0.015 4.015 11 C -0.052 4.052 12 C -0.166 4.166 13 C 0.083 3.917 14 C -0.440 4.440 15 H 0.094 0.906 16 C 0.084 3.916 17 N -0.801 5.801 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.243 1.243 22 C -0.214 4.214 23 C -0.103 4.103 24 C -0.030 4.030 25 F -0.163 7.163 26 C -0.110 4.110 27 C -0.100 4.100 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.287 0.713 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.127 0.873 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 13.614 -14.260 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.289 6.289 6 C 0.028 3.972 7 C -0.105 4.105 8 C -0.118 4.118 9 C -0.123 4.123 10 C -0.015 4.015 11 C -0.053 4.053 12 C -0.186 4.186 13 C 0.080 3.920 14 C -0.468 4.468 15 H 0.112 0.888 16 C -0.136 4.136 17 N -0.424 5.424 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.215 1.215 21 H -0.166 1.166 22 C -0.233 4.233 23 C -0.122 4.122 24 C -0.050 4.050 25 F -0.143 7.143 26 C -0.128 4.128 27 C -0.118 4.118 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.145 0.855 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.525 13.481 -14.034 20.865 hybrid contribution 0.292 0.388 0.358 0.603 sum -7.233 13.869 -13.676 20.777 Atomic orbital electron populations 1.22440 0.95881 1.02557 1.02764 1.21494 0.93068 0.93282 0.85675 1.21749 1.02047 0.93339 1.02321 1.22440 1.02334 1.01036 0.97837 1.88099 1.74377 1.23728 1.42655 1.21307 0.97970 0.82806 0.95157 1.19483 0.95900 1.00705 0.94369 1.20859 0.99741 0.99198 0.92024 1.21208 0.95437 0.97643 0.98030 1.18948 0.93693 0.95916 0.92922 1.18449 1.01487 0.94865 0.90452 1.20988 1.06683 0.93089 0.97804 1.17689 0.91041 0.92923 0.90313 1.19471 1.15837 0.94218 1.17237 0.88793 1.26177 0.97513 0.96286 0.93663 1.69702 1.27267 1.18046 1.27395 0.86348 0.77798 0.82089 0.80342 1.19428 1.21522 1.16574 1.20948 1.09166 0.95135 0.98082 1.20530 0.99953 0.95980 0.95695 1.17158 1.12597 0.80476 0.94766 1.91316 1.87989 1.37670 1.97301 1.21259 1.00050 0.99762 0.91745 1.20876 0.94717 0.98111 0.98111 0.91654 0.91638 0.92133 0.91772 0.91311 0.91778 0.92127 0.91640 0.91632 0.92519 0.92566 0.86404 0.85917 0.86919 0.90214 0.87267 0.87355 0.85530 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.25 37.16 0.31 -1.06 16 2 C 0.10 0.94 1.14 -90.62 -0.10 0.84 16 3 C -0.14 -1.10 8.84 37.16 0.33 -0.77 16 4 C -0.18 -1.37 8.25 37.16 0.31 -1.07 16 5 O -0.37 -4.55 9.97 -35.23 -0.35 -4.90 16 6 C 0.10 1.18 5.25 36.00 0.19 1.37 16 7 C -0.10 -1.48 5.51 -104.56 -0.58 -2.05 16 8 C -0.10 -1.48 9.68 -39.63 -0.38 -1.86 16 9 C -0.11 -1.80 8.86 -39.25 -0.35 -2.15 16 10 C -0.01 -0.28 5.30 -104.90 -0.56 -0.83 16 11 C -0.05 -1.10 5.47 -104.90 -0.57 -1.68 16 12 C -0.17 -3.73 9.24 -38.55 -0.36 -4.08 16 13 C 0.08 2.03 5.10 -106.86 -0.54 1.48 16 14 C -0.44 -11.30 9.56 -37.78 -0.36 -11.67 16 15 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 16 C 0.08 2.09 5.40 -17.34 -0.09 2.00 16 17 N -0.80 -20.46 13.93 55.54 0.77 -19.69 16 18 Si 0.91 19.91 24.52 -169.99 -4.17 15.74 16 19 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.24 -5.47 6.87 56.52 0.39 -5.09 16 22 C -0.21 -4.98 7.16 -38.85 -0.28 -5.26 16 23 C -0.10 -2.24 9.99 -39.64 -0.40 -2.63 16 24 C -0.03 -0.66 7.19 -38.73 -0.28 -0.94 16 25 F -0.16 -3.48 15.88 2.25 0.04 -3.45 16 26 C -0.11 -1.85 9.50 -39.25 -0.37 -2.23 16 27 C -0.10 -1.46 9.69 -39.63 -0.38 -1.85 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 38 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 39 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 40 H 0.12 2.07 7.80 -52.49 -0.41 1.66 16 41 H 0.11 2.38 8.03 -52.49 -0.42 1.96 16 42 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 43 H 0.11 2.50 4.73 -52.49 -0.25 2.25 16 44 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -27.27 376.28 -9.18 -36.45 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.66 Total: 4.61 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -4.48 Total: -34.44 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.77 Total: -19.69 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.35 Total: -4.90 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.17 Total: 15.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.27 -9.18 -36.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240942423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.010 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds