Wall clock time and date at job start Tue Mar 31 2020 14:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47209 * 2 1 4 4 C 1.52999 * 109.46757 * 239.99971 * 2 1 3 5 5 O 1.42901 * 109.47258 * 120.00248 * 2 1 3 6 6 C 1.42898 * 113.99852 * 59.99581 * 5 2 1 7 7 C 1.50698 * 109.47236 * 180.02562 * 6 5 2 8 8 C 1.38319 * 119.88294 * 89.99487 * 7 6 5 9 9 C 1.38016 * 120.12760 * 179.72640 * 8 7 6 10 10 C 1.39343 * 119.87403 * 0.27901 * 9 8 7 11 11 C 1.48381 * 120.12298 * 179.97438 * 10 9 8 12 12 C 1.38667 * 120.01691 * 129.99705 * 11 10 9 13 13 C 1.40549 * 119.65513 * 179.97438 * 12 11 10 14 14 C 1.41348 * 120.15566 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99548 * 330.16893 * 14 13 12 16 16 C 1.39900 * 119.99967 * 150.16902 * 14 13 12 17 17 N 1.30859 * 119.99460 * 161.72689 * 16 14 13 18 18 Si 1.86800 * 120.00175 * 341.73097 * 16 14 13 19 19 H 1.48500 * 109.47008 * 95.41613 * 18 16 14 20 20 H 1.48503 * 109.46919 * 215.41691 * 18 16 14 21 21 H 1.48500 * 109.47054 * 335.41498 * 18 16 14 22 22 C 1.40849 * 119.69051 * 0.02562 * 13 12 11 23 23 C 1.37552 * 120.02235 * 0.02562 * 22 13 12 24 24 C 1.38763 * 120.34773 * 359.69740 * 23 22 13 25 25 F 1.35101 * 119.84558 * 180.29984 * 24 23 22 26 26 C 1.39341 * 119.75920 * 359.97438 * 10 9 8 27 27 C 1.38019 * 119.87711 * 0.02562 * 26 10 9 28 28 H 1.09009 * 109.46702 * 300.00138 * 1 2 3 29 29 H 1.09003 * 109.47188 * 59.99676 * 1 2 3 30 30 H 1.08991 * 109.47463 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46713 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.46746 * 300.00017 * 3 2 1 33 33 H 1.08994 * 109.46918 * 60.00387 * 3 2 1 34 34 H 1.09001 * 109.47349 * 300.00487 * 4 2 1 35 35 H 1.09003 * 109.46983 * 60.00228 * 4 2 1 36 36 H 1.08999 * 109.47207 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47201 * 59.99907 * 6 5 2 38 38 H 1.09002 * 109.47267 * 300.00198 * 6 5 2 39 39 H 1.08008 * 119.93623 * 0.02562 * 8 7 6 40 40 H 1.07994 * 120.06507 * 180.25906 * 9 8 7 41 41 H 1.07994 * 120.17231 * 0.02562 * 12 11 10 42 42 H 0.97003 * 119.99465 * 179.97438 * 17 16 14 43 43 H 1.07994 * 119.98925 * 179.97438 * 22 13 12 44 44 H 1.08000 * 119.82570 * 179.97438 * 23 22 13 45 45 H 1.08001 * 120.06650 * 179.97438 * 26 10 9 46 46 H 1.07998 * 119.94131 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1410 -2.6445 2.5256 8 6 1.4160 -2.5766 3.7017 9 6 1.9182 -3.1375 4.8584 10 6 3.1607 -3.7680 4.8413 11 6 3.7061 -4.3725 6.0819 12 6 4.1844 -5.6739 6.0672 13 6 4.6999 -6.2387 7.2465 14 6 5.1898 -7.5646 7.2436 15 1 4.7722 -8.2930 6.5644 16 6 6.2155 -7.9332 8.1206 17 7 6.4288 -9.1973 8.3835 18 14 7.2805 -6.6210 8.9165 19 1 6.7417 -6.2947 10.2612 20 1 8.6709 -7.1255 9.0493 21 1 7.2757 -5.3999 8.0715 22 6 4.7250 -5.4777 8.4314 23 6 4.2462 -4.1882 8.4315 24 6 3.7423 -3.6274 7.2665 25 9 3.2801 -2.3580 7.2767 26 6 3.8891 -3.8290 3.6551 27 6 3.3773 -3.2646 2.5042 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 1.9490 -2.5916 0.4007 38 1 0.4958 -2.0777 1.2907 39 1 0.4529 -2.0878 3.7137 40 1 1.3494 -3.0875 5.7751 41 1 4.1618 -6.2503 5.1541 42 1 7.1402 -9.4529 8.9913 43 1 5.1197 -5.9070 9.3404 44 1 4.2666 -3.6077 9.3419 45 1 4.8529 -4.3161 3.6363 46 1 3.9409 -3.3116 1.5841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240942423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:44 Heat of formation + Delta-G solvation = -77.686105 kcal Electronic energy + Delta-G solvation = -26720.687951 eV Core-core repulsion = 22874.138975 eV Total energy + Delta-G solvation = -3846.548977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.43713 -40.71793 -39.84525 -39.01372 -35.67486 -34.81141 -33.42921 -32.11045 -31.83316 -30.73045 -28.47231 -28.26660 -27.00920 -26.48412 -23.89664 -23.55771 -22.47097 -21.77576 -20.87375 -19.43079 -18.45962 -17.50683 -17.43165 -17.21032 -16.85291 -16.56129 -16.41687 -16.12599 -15.52787 -15.35587 -15.07357 -14.86615 -14.61839 -14.48870 -14.37274 -14.26867 -14.07025 -13.84012 -13.69237 -13.40152 -13.14190 -12.87210 -12.85865 -12.69212 -12.62851 -12.55790 -12.37961 -12.18114 -11.99897 -11.95651 -11.86917 -11.50762 -11.40004 -11.05335 -10.43916 -10.14028 -9.87761 -9.56526 -9.09125 -8.95864 -6.54892 -0.04413 0.47486 0.55509 0.77666 1.25861 1.38340 1.48049 2.08968 2.39156 2.59896 3.10434 3.31910 3.64528 3.73628 3.84719 3.86497 3.97398 4.04425 4.09777 4.10628 4.16181 4.33200 4.37901 4.50759 4.53157 4.66212 4.68878 4.72007 4.73361 4.82594 4.84686 4.89009 4.95205 4.96790 4.98907 5.10293 5.11570 5.19553 5.34787 5.37619 5.38785 5.42298 5.45995 5.57687 5.60087 5.71866 5.77927 6.00021 6.11759 6.26034 6.38125 6.59340 6.72062 8.11600 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.002421 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.321142 B =11564.424451 C =12017.678757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 C -0.138 4.138 4 C -0.177 4.177 5 O -0.394 6.394 6 C 0.105 3.895 7 C -0.098 4.098 8 C -0.099 4.099 9 C -0.114 4.114 10 C -0.049 4.049 11 C -0.046 4.046 12 C -0.175 4.175 13 C 0.071 3.929 14 C -0.472 4.472 15 H 0.065 0.935 16 C 0.052 3.948 17 N -0.837 5.837 18 Si 0.957 3.043 19 H -0.253 1.253 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.223 4.223 23 C -0.103 4.103 24 C -0.031 4.031 25 F -0.158 7.158 26 C -0.119 4.119 27 C -0.099 4.099 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.143 0.857 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.297 0.703 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.126 0.874 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 16.138 -15.733 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.195 4.195 4 C -0.234 4.234 5 O -0.315 6.315 6 C 0.030 3.970 7 C -0.098 4.098 8 C -0.117 4.117 9 C -0.132 4.132 10 C -0.049 4.049 11 C -0.047 4.047 12 C -0.194 4.194 13 C 0.068 3.932 14 C -0.500 4.500 15 H 0.083 0.917 16 C -0.165 4.165 17 N -0.463 5.463 18 Si 0.780 3.220 19 H -0.178 1.178 20 H -0.201 1.201 21 H -0.178 1.178 22 C -0.242 4.242 23 C -0.122 4.122 24 C -0.051 4.051 25 F -0.137 7.137 26 C -0.137 4.137 27 C -0.117 4.117 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.161 0.839 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.156 0.844 45 H 0.143 0.857 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.398 16.006 -15.509 23.817 hybrid contribution 0.404 -0.214 0.636 0.783 sum -7.994 15.792 -14.873 23.120 Atomic orbital electron populations 1.22423 0.94752 1.02913 1.03325 1.21752 0.94031 0.93419 0.85124 1.21791 1.01546 0.93114 1.03050 1.22425 1.01863 1.01276 0.97870 1.88053 1.75065 1.23948 1.44432 1.21323 0.98798 0.82836 0.94076 1.19888 0.95282 0.99283 0.95354 1.21141 1.00732 0.98459 0.91373 1.21256 0.94985 0.98023 0.98979 1.18950 0.95168 0.98246 0.92552 1.18694 1.00058 0.94227 0.91704 1.21078 1.07038 0.93752 0.97575 1.17833 0.91276 0.92646 0.91417 1.19434 1.17671 0.94663 1.18263 0.91714 1.26786 0.97940 0.97862 0.93878 1.69719 1.28488 1.19272 1.28774 0.85599 0.77066 0.79372 0.79917 1.17815 1.20093 1.17784 1.21034 1.09679 0.95716 0.97805 1.20809 0.98910 0.95626 0.96835 1.17401 1.11864 0.80681 0.95144 1.91328 1.87856 1.37236 1.97297 1.21345 1.00136 1.00192 0.91990 1.21165 0.95137 0.97145 0.98217 0.92379 0.89851 0.91854 0.92611 0.89061 0.92596 0.91858 0.89855 0.92389 0.90952 0.90966 0.83876 0.86294 0.86598 0.89263 0.86879 0.84440 0.85650 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 8.25 71.98 0.59 -1.57 16 2 C 0.10 1.47 1.14 -10.79 -0.01 1.45 16 3 C -0.14 -1.92 8.84 71.98 0.64 -1.28 16 4 C -0.18 -2.19 8.25 71.98 0.59 -1.59 16 5 O -0.39 -8.73 9.97 -148.98 -1.49 -10.21 16 6 C 0.11 2.08 5.25 71.24 0.37 2.45 16 7 C -0.10 -2.53 5.51 -19.82 -0.11 -2.63 16 8 C -0.10 -2.72 9.68 22.24 0.22 -2.51 16 9 C -0.11 -3.81 8.86 22.48 0.20 -3.61 16 10 C -0.05 -1.83 5.30 -20.04 -0.11 -1.94 16 11 C -0.05 -1.97 5.47 -20.05 -0.11 -2.08 16 12 C -0.18 -8.05 9.24 22.94 0.21 -7.84 16 13 C 0.07 3.53 5.10 -21.31 -0.11 3.42 16 14 C -0.47 -25.38 9.56 23.44 0.22 -25.16 16 15 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 16 C 0.05 2.66 5.40 85.24 0.46 3.12 16 17 N -0.84 -44.03 13.93 21.82 0.30 -43.73 16 18 Si 0.96 40.94 24.52 68.60 1.68 42.63 16 19 H -0.25 -10.13 6.71 99.48 0.67 -9.46 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.25 -11.24 6.87 99.48 0.68 -10.55 16 22 C -0.22 -10.32 7.16 22.75 0.16 -10.16 16 23 C -0.10 -4.36 9.99 22.23 0.22 -4.14 16 24 C -0.03 -1.34 7.19 22.82 0.16 -1.18 16 25 F -0.16 -6.51 15.88 44.97 0.71 -5.79 16 26 C -0.12 -3.92 9.50 22.48 0.21 -3.70 16 27 C -0.10 -2.70 9.69 22.24 0.22 -2.48 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.74 6.54 -2.39 -0.02 0.72 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.74 6.54 -2.39 -0.02 0.73 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.21 6.36 -2.39 -0.02 1.19 16 38 H 0.07 1.20 6.36 -2.39 -0.02 1.18 16 39 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.12 3.94 7.80 -2.91 -0.02 3.92 16 41 H 0.12 5.11 8.03 -2.91 -0.02 5.09 16 42 H 0.30 13.96 8.30 -92.71 -0.77 13.19 16 43 H 0.11 5.09 4.73 -2.91 -0.01 5.08 16 44 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 45 H 0.13 4.05 8.04 -2.91 -0.02 4.03 16 46 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -59.61 376.28 6.17 -53.44 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.91 Total: 25.09 kcal Atomic # 6 Polarization: -65.46 SS G_CDS: 4.04 Total: -61.42 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.30 Total: -43.73 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.49 Total: -10.21 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.71 Total: -5.79 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 1.68 Total: 42.63 kcal Total: -59.61 6.17 -53.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240942423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.250 kcal (2) G-P(sol) polarization free energy of solvation -59.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds