Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46909 * 2 1 4 4 C 1.53008 * 109.46805 * 240.00889 * 2 1 3 5 5 O 1.42895 * 109.47664 * 120.00784 * 2 1 3 6 6 C 1.42896 * 114.00538 * 59.99535 * 5 2 1 7 7 C 1.50696 * 109.47406 * 180.02562 * 6 5 2 8 8 C 1.38394 * 119.84776 * 90.00215 * 7 6 5 9 9 C 1.37929 * 120.14721 * 180.02562 * 8 7 6 10 10 C 1.39637 * 119.85103 * 359.97438 * 9 8 7 11 11 C 1.47885 * 120.14848 * 180.02562 * 10 9 8 12 12 C 1.39050 * 120.31756 * 310.00220 * 11 10 9 13 13 C 1.38401 * 119.95878 * 180.02562 * 12 11 10 14 14 F 1.35100 * 119.69649 * 179.97438 * 13 12 11 15 15 C 1.39215 * 120.60786 * 359.97304 * 13 12 11 16 16 C 1.36347 * 120.65100 * 0.04707 * 15 13 12 17 17 C 1.40796 * 120.01915 * 0.25176 * 16 15 13 18 18 C 1.40822 * 120.29926 * 179.71909 * 17 16 15 19 19 H 1.08002 * 119.99732 * 153.51498 * 18 17 16 20 20 C 1.40049 * 120.00333 * 333.51860 * 18 17 16 21 21 N 1.30799 * 119.99581 * 344.22685 * 20 18 17 22 22 Si 1.86798 * 120.00249 * 164.22598 * 20 18 17 23 23 H 1.48504 * 109.47010 * 59.99610 * 22 20 18 24 24 H 1.48495 * 109.47195 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47056 * 300.00119 * 22 20 18 26 26 C 1.39637 * 119.70315 * 0.27424 * 10 9 8 27 27 C 1.37939 * 119.84924 * 359.45484 * 26 10 9 28 28 H 1.08999 * 109.46981 * 299.98989 * 1 2 3 29 29 H 1.08995 * 109.47366 * 59.99447 * 1 2 3 30 30 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46856 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47201 * 300.00322 * 3 2 1 33 33 H 1.08997 * 109.47205 * 60.00605 * 3 2 1 34 34 H 1.09003 * 109.46838 * 299.99200 * 4 2 1 35 35 H 1.08993 * 109.47145 * 59.99248 * 4 2 1 36 36 H 1.08995 * 109.46883 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.46629 * 59.99983 * 6 5 2 38 38 H 1.09003 * 109.47081 * 300.00500 * 6 5 2 39 39 H 1.08003 * 119.92667 * 0.02562 * 8 7 6 40 40 H 1.08007 * 120.07357 * 180.02562 * 9 8 7 41 41 H 1.08002 * 120.02307 * 359.97438 * 12 11 10 42 42 H 1.08003 * 119.67238 * 180.02562 * 15 13 12 43 43 H 1.08008 * 119.99083 * 179.97438 * 16 15 13 44 44 H 0.97001 * 119.99793 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.07488 * 179.71609 * 26 10 9 46 46 H 1.07994 * 119.92408 * 180.25054 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0065 -0.6737 1.1666 6 6 1.5849 -2.0356 1.2643 7 6 2.1414 -2.6445 2.5255 8 6 1.4154 -2.5764 3.7017 9 6 1.9191 -3.1311 4.8597 10 6 3.1642 -3.7631 4.8433 11 6 3.7103 -4.3606 6.0809 12 6 3.7471 -3.6234 7.2593 13 6 4.2602 -4.1898 8.4132 14 9 4.2939 -3.4685 9.5550 15 6 4.7419 -5.4959 8.4080 16 6 4.7182 -6.2411 7.2664 17 6 4.2078 -5.6895 6.0757 18 6 4.1859 -6.4518 4.8919 19 1 3.4534 -6.2403 4.1269 20 6 5.1139 -7.4842 4.7064 21 7 6.1787 -7.5500 5.4631 22 14 4.8309 -8.7671 3.3785 23 1 4.7653 -8.1011 2.0528 24 1 5.9492 -9.7439 3.3876 25 1 3.5526 -9.4763 3.6398 26 6 3.8937 -3.8237 3.6542 27 6 3.3757 -3.2697 2.5020 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2495 35 1 1.6765 -0.2072 -2.1393 36 1 3.1299 -0.7215 -1.2492 37 1 1.9493 -2.5916 0.4004 38 1 0.4960 -2.0779 1.2906 39 1 0.4523 -2.0877 3.7130 40 1 1.3514 -3.0776 5.7770 41 1 3.3762 -2.6091 7.2740 42 1 5.1387 -5.9231 9.3172 43 1 5.0951 -7.2532 7.2744 44 1 6.8217 -8.2648 5.3344 45 1 4.8593 -4.3069 3.6357 46 1 3.9371 -3.3194 1.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240942825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = -69.178821 kcal Electronic energy + Delta-G solvation = -27050.403393 eV Core-core repulsion = 23204.223320 eV Total energy + Delta-G solvation = -3846.180073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -47.51127 -39.41928 -38.57030 -37.10045 -33.85087 -33.70699 -31.85904 -30.43375 -29.43220 -29.09597 -27.65512 -27.59401 -25.72426 -24.71912 -22.19509 -21.64231 -20.88482 -20.07176 -19.76325 -17.53641 -16.61907 -16.57413 -15.81897 -15.57940 -15.40957 -14.76440 -14.50231 -14.36848 -14.23500 -14.06582 -14.00619 -13.54466 -13.49760 -12.88708 -12.78240 -12.63524 -12.37378 -12.25141 -12.15551 -12.03499 -11.91601 -11.85909 -11.67585 -11.41660 -11.31633 -11.19847 -10.98177 -10.84141 -10.50155 -10.44767 -10.36352 -10.05784 -9.54721 -9.49463 -9.31498 -8.34545 -8.26390 -7.50861 -7.33275 -6.95464 -4.51042 1.69872 2.08756 2.56229 2.78680 2.96971 2.99247 3.06264 3.75455 3.78447 4.37120 4.53864 4.63422 4.67047 4.85501 5.17293 5.22973 5.27533 5.31210 5.38496 5.43139 5.51857 5.53260 5.61532 5.64074 5.67428 5.68955 5.73916 5.86228 5.93591 6.03266 6.07474 6.08878 6.12939 6.25205 6.30482 6.65886 6.68449 6.82407 6.87016 7.02270 7.04102 7.14320 7.30648 7.32899 7.35508 7.52847 7.70790 7.74792 7.86023 8.03734 8.37635 8.63267 8.70923 9.95438 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003352 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.595677 B = 8351.845132 C =10293.783132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.106 3.894 7 C -0.119 4.119 8 C -0.102 4.102 9 C -0.133 4.133 10 C 0.026 3.974 11 C -0.169 4.169 12 C -0.094 4.094 13 C -0.048 4.048 14 F -0.174 7.174 15 C -0.123 4.123 16 C -0.137 4.137 17 C 0.123 3.877 18 C -0.442 4.442 19 H 0.087 0.913 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.909 3.091 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.099 4.099 27 C -0.104 4.104 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.128 0.872 44 H 0.286 0.714 45 H 0.131 0.869 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 8.025 -11.105 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.289 6.289 6 C 0.031 3.969 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.151 4.151 10 C 0.026 3.974 11 C -0.171 4.171 12 C -0.113 4.113 13 C -0.067 4.067 14 F -0.153 7.153 15 C -0.143 4.143 16 C -0.156 4.156 17 C 0.120 3.880 18 C -0.470 4.470 19 H 0.105 0.895 20 C -0.144 4.144 21 N -0.408 5.408 22 Si 0.732 3.268 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.117 4.117 27 C -0.122 4.122 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.146 0.854 44 H 0.097 0.903 45 H 0.149 0.851 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.769 7.992 -10.905 15.120 hybrid contribution -0.138 -0.669 -0.519 0.857 sum -6.907 7.324 -11.423 15.226 Atomic orbital electron populations 1.22435 0.96017 1.02537 1.02610 1.21469 0.92977 0.93247 0.85868 1.21746 1.02029 0.93448 1.02193 1.22439 1.02337 1.01068 0.97803 1.88100 1.74366 1.23997 1.42389 1.21286 0.97685 0.82494 0.95477 1.19370 0.96429 1.01963 0.94160 1.20733 0.99324 0.99714 0.92270 1.21253 0.95908 1.00230 0.97688 1.18767 0.92316 0.93217 0.93100 1.18368 1.12996 0.94503 0.91238 1.20534 1.00669 0.98504 0.91590 1.17183 1.15038 0.92203 0.82297 1.91288 1.96083 1.78344 1.49584 1.20501 1.01796 0.93078 0.98890 1.20953 1.03702 1.00181 0.90783 1.17566 0.88082 0.89327 0.92978 1.19594 1.13289 1.11587 1.02547 0.89516 1.25993 0.93732 0.97654 0.97044 1.69772 1.06941 1.29256 1.34834 0.86331 0.79234 0.80020 0.81170 1.18637 1.20162 1.18592 1.21406 1.00457 0.98229 0.91565 1.20860 0.94748 0.98444 0.98160 0.91709 0.91776 0.92134 0.91795 0.91435 0.91834 0.92118 0.91776 0.91648 0.92815 0.92913 0.87127 0.86583 0.87880 0.88128 0.85432 0.90323 0.85105 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.25 37.16 0.31 -1.28 16 2 C 0.10 1.08 1.14 -90.61 -0.10 0.97 16 3 C -0.14 -1.25 8.84 37.16 0.33 -0.92 16 4 C -0.18 -1.63 8.25 37.16 0.31 -1.32 16 5 O -0.37 -5.12 9.97 -35.23 -0.35 -5.47 16 6 C 0.11 1.42 5.25 36.00 0.19 1.61 16 7 C -0.12 -1.95 5.52 -104.51 -0.58 -2.52 16 8 C -0.10 -1.70 9.68 -39.64 -0.38 -2.08 16 9 C -0.13 -2.47 9.52 -39.17 -0.37 -2.84 16 10 C 0.03 0.55 4.93 -104.90 -0.52 0.03 16 11 C -0.17 -3.93 5.53 -104.25 -0.58 -4.51 16 12 C -0.09 -2.14 9.48 -39.22 -0.37 -2.51 16 13 C -0.05 -1.11 7.31 -39.16 -0.29 -1.40 16 14 F -0.17 -3.92 17.26 2.25 0.04 -3.89 16 15 C -0.12 -2.86 9.94 -39.90 -0.40 -3.26 16 16 C -0.14 -3.35 8.61 -39.30 -0.34 -3.69 16 17 C 0.12 3.05 5.56 -106.55 -0.59 2.45 16 18 C -0.44 -10.64 7.12 -37.93 -0.27 -10.91 16 19 H 0.09 2.06 6.60 -52.49 -0.35 1.71 16 20 C 0.08 1.73 5.17 -17.31 -0.09 1.64 16 21 N -0.78 -18.60 10.96 55.55 0.61 -17.99 16 22 Si 0.91 17.41 29.59 -169.99 -5.03 12.38 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 26 C -0.10 -1.98 7.99 -39.17 -0.31 -2.29 16 27 C -0.10 -1.82 9.68 -39.64 -0.38 -2.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.53 6.54 -51.93 -0.34 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 38 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 40 H 0.12 2.03 8.05 -52.48 -0.42 1.61 16 41 H 0.10 2.15 8.04 -52.49 -0.42 1.73 16 42 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 43 H 0.13 3.15 6.22 -52.48 -0.33 2.82 16 44 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 45 H 0.13 2.77 7.30 -52.49 -0.38 2.39 16 46 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -26.03 378.34 -10.07 -36.11 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.60 Total: 8.17 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: -4.44 Total: -35.01 kcal Atomic # 7 Polarization: -18.60 SS G_CDS: 0.61 Total: -17.99 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.35 Total: -5.47 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.03 -10.07 -36.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240942825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.074 kcal (2) G-P(sol) polarization free energy of solvation -26.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds