Wall clock time and date at job start Tue Mar 31 2020 14:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46909 * 2 1 4 4 C 1.53008 * 109.46805 * 240.00889 * 2 1 3 5 5 O 1.42895 * 109.47664 * 120.00784 * 2 1 3 6 6 C 1.42896 * 114.00538 * 59.99535 * 5 2 1 7 7 C 1.50696 * 109.47406 * 180.02562 * 6 5 2 8 8 C 1.38394 * 119.84776 * 90.00215 * 7 6 5 9 9 C 1.37929 * 120.14721 * 180.02562 * 8 7 6 10 10 C 1.39637 * 119.85103 * 359.97438 * 9 8 7 11 11 C 1.47885 * 120.14848 * 180.02562 * 10 9 8 12 12 C 1.39050 * 120.31756 * 310.00220 * 11 10 9 13 13 C 1.38401 * 119.95878 * 180.02562 * 12 11 10 14 14 F 1.35100 * 119.69649 * 179.97438 * 13 12 11 15 15 C 1.39215 * 120.60786 * 359.97304 * 13 12 11 16 16 C 1.36347 * 120.65100 * 0.04707 * 15 13 12 17 17 C 1.40796 * 120.01915 * 0.25176 * 16 15 13 18 18 C 1.40822 * 120.29926 * 179.71909 * 17 16 15 19 19 H 1.08002 * 119.99732 * 153.51498 * 18 17 16 20 20 C 1.40049 * 120.00333 * 333.51860 * 18 17 16 21 21 N 1.30799 * 119.99581 * 344.22685 * 20 18 17 22 22 Si 1.86798 * 120.00249 * 164.22598 * 20 18 17 23 23 H 1.48504 * 109.47010 * 59.99610 * 22 20 18 24 24 H 1.48495 * 109.47195 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47056 * 300.00119 * 22 20 18 26 26 C 1.39637 * 119.70315 * 0.27424 * 10 9 8 27 27 C 1.37939 * 119.84924 * 359.45484 * 26 10 9 28 28 H 1.08999 * 109.46981 * 299.98989 * 1 2 3 29 29 H 1.08995 * 109.47366 * 59.99447 * 1 2 3 30 30 H 1.09003 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46856 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47201 * 300.00322 * 3 2 1 33 33 H 1.08997 * 109.47205 * 60.00605 * 3 2 1 34 34 H 1.09003 * 109.46838 * 299.99200 * 4 2 1 35 35 H 1.08993 * 109.47145 * 59.99248 * 4 2 1 36 36 H 1.08995 * 109.46883 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.46629 * 59.99983 * 6 5 2 38 38 H 1.09003 * 109.47081 * 300.00500 * 6 5 2 39 39 H 1.08003 * 119.92667 * 0.02562 * 8 7 6 40 40 H 1.08007 * 120.07357 * 180.02562 * 9 8 7 41 41 H 1.08002 * 120.02307 * 359.97438 * 12 11 10 42 42 H 1.08003 * 119.67238 * 180.02562 * 15 13 12 43 43 H 1.08008 * 119.99083 * 179.97438 * 16 15 13 44 44 H 0.97001 * 119.99793 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.07488 * 179.71609 * 26 10 9 46 46 H 1.07994 * 119.92408 * 180.25054 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0065 -0.6737 1.1666 6 6 1.5849 -2.0356 1.2643 7 6 2.1414 -2.6445 2.5255 8 6 1.4154 -2.5764 3.7017 9 6 1.9191 -3.1311 4.8597 10 6 3.1642 -3.7631 4.8433 11 6 3.7103 -4.3606 6.0809 12 6 3.7471 -3.6234 7.2593 13 6 4.2602 -4.1898 8.4132 14 9 4.2939 -3.4685 9.5550 15 6 4.7419 -5.4959 8.4080 16 6 4.7182 -6.2411 7.2664 17 6 4.2078 -5.6895 6.0757 18 6 4.1859 -6.4518 4.8919 19 1 3.4534 -6.2403 4.1269 20 6 5.1139 -7.4842 4.7064 21 7 6.1787 -7.5500 5.4631 22 14 4.8309 -8.7671 3.3785 23 1 4.7653 -8.1011 2.0528 24 1 5.9492 -9.7439 3.3876 25 1 3.5526 -9.4763 3.6398 26 6 3.8937 -3.8237 3.6542 27 6 3.3757 -3.2697 2.5020 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2495 35 1 1.6765 -0.2072 -2.1393 36 1 3.1299 -0.7215 -1.2492 37 1 1.9493 -2.5916 0.4004 38 1 0.4960 -2.0779 1.2906 39 1 0.4523 -2.0877 3.7130 40 1 1.3514 -3.0776 5.7770 41 1 3.3762 -2.6091 7.2740 42 1 5.1387 -5.9231 9.3172 43 1 5.0951 -7.2532 7.2744 44 1 6.8217 -8.2648 5.3344 45 1 4.8593 -4.3069 3.6357 46 1 3.9371 -3.3194 1.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240942825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:15 Heat of formation + Delta-G solvation = -77.974613 kcal Electronic energy + Delta-G solvation = -27050.784807 eV Core-core repulsion = 23204.223320 eV Total energy + Delta-G solvation = -3846.561488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -49.33675 -40.65255 -39.82350 -38.68443 -35.56948 -34.78150 -33.25017 -31.93195 -31.17994 -30.59678 -28.46334 -28.25699 -27.27908 -26.20799 -23.73146 -23.16821 -22.59800 -21.38124 -20.83725 -19.33557 -18.25438 -17.44770 -17.32103 -16.98732 -16.68043 -16.30511 -16.09205 -16.07126 -15.62867 -15.46534 -15.18099 -14.55779 -14.53222 -14.36151 -14.17600 -14.14423 -13.81358 -13.67937 -13.28284 -13.13293 -13.01905 -12.84460 -12.80442 -12.74261 -12.61603 -12.54442 -12.25873 -12.13913 -12.09964 -11.82306 -11.73063 -11.40833 -11.24440 -11.06642 -10.40430 -9.95116 -9.71287 -9.31197 -9.03920 -8.69376 -6.34615 0.19662 0.65137 0.77924 1.05351 1.39241 1.48103 1.50977 2.17710 2.58139 2.71005 3.20749 3.57469 3.83502 3.88949 3.93227 4.04812 4.09724 4.16738 4.18098 4.25087 4.26237 4.41534 4.43371 4.55763 4.68640 4.69391 4.74394 4.83413 4.88565 4.90868 4.97539 4.99965 5.00468 5.09850 5.15523 5.20917 5.23392 5.28992 5.38963 5.40211 5.42045 5.57625 5.74514 5.75623 5.82889 5.90826 6.07615 6.20720 6.24567 6.42451 6.54925 6.81777 6.88422 8.23354 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003352 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.595677 B = 8351.845132 C =10293.783132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.394 6.394 6 C 0.110 3.890 7 C -0.112 4.112 8 C -0.099 4.099 9 C -0.135 4.135 10 C -0.005 4.005 11 C -0.171 4.171 12 C -0.099 4.099 13 C -0.061 4.061 14 F -0.170 7.170 15 C -0.127 4.127 16 C -0.157 4.157 17 C 0.097 3.903 18 C -0.458 4.458 19 H 0.083 0.917 20 C 0.041 3.959 21 N -0.812 5.812 22 Si 0.974 3.026 23 H -0.257 1.257 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.112 4.112 27 C -0.106 4.106 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.293 0.707 45 H 0.108 0.892 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 8.844 -13.562 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.056 3.944 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.314 6.314 6 C 0.034 3.966 7 C -0.112 4.112 8 C -0.117 4.117 9 C -0.153 4.153 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.118 4.118 13 C -0.081 4.081 14 F -0.150 7.150 15 C -0.146 4.146 16 C -0.176 4.176 17 C 0.094 3.906 18 C -0.486 4.486 19 H 0.101 0.899 20 C -0.176 4.176 21 N -0.436 5.436 22 Si 0.795 3.205 23 H -0.182 1.182 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.130 4.130 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.126 0.874 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.429 8.828 -13.353 18.091 hybrid contribution 0.349 -0.785 0.179 0.878 sum -8.080 8.043 -13.174 17.422 Atomic orbital electron populations 1.22414 0.94698 1.02860 1.03358 1.21756 0.94093 0.93454 0.85139 1.21788 1.01486 0.93057 1.03095 1.22428 1.01771 1.01240 0.98035 1.88053 1.75096 1.23989 1.44304 1.21263 0.98580 0.82670 0.94098 1.19774 0.95488 1.00400 0.95506 1.21063 1.00367 0.98772 0.91452 1.21375 0.95105 0.99859 0.98981 1.18784 0.93868 0.95285 0.92527 1.18683 1.11996 0.94110 0.92433 1.20743 1.00505 0.99212 0.91360 1.17321 1.15611 0.92461 0.82708 1.91286 1.96116 1.78208 1.49352 1.20660 1.01535 0.93149 0.99244 1.20933 1.05163 1.00129 0.91423 1.17918 0.88864 0.90298 0.93474 1.19697 1.13801 1.12625 1.02459 0.89858 1.26739 0.93000 0.98898 0.99005 1.69814 1.07596 1.30031 1.36194 0.85347 0.79230 0.77497 0.78461 1.18156 1.19138 1.18466 1.21271 0.99922 0.99299 0.92518 1.21063 0.95503 0.97943 0.97881 0.92260 0.89800 0.91989 0.92720 0.89007 0.92479 0.92063 0.89735 0.92572 0.91619 0.91047 0.84097 0.85865 0.86283 0.86397 0.86327 0.89592 0.87375 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.25 71.98 0.59 -1.95 16 2 C 0.09 1.70 1.14 -10.79 -0.01 1.68 16 3 C -0.14 -2.19 8.84 71.98 0.64 -1.55 16 4 C -0.18 -2.71 8.25 71.98 0.59 -2.12 16 5 O -0.39 -10.00 9.97 -148.98 -1.49 -11.48 16 6 C 0.11 2.61 5.25 71.23 0.37 2.99 16 7 C -0.11 -3.41 5.52 -19.79 -0.11 -3.52 16 8 C -0.10 -3.06 9.68 22.23 0.22 -2.84 16 9 C -0.14 -4.92 9.52 22.53 0.21 -4.71 16 10 C 0.00 -0.19 4.93 -20.05 -0.10 -0.29 16 11 C -0.17 -8.16 5.53 -19.62 -0.11 -8.26 16 12 C -0.10 -4.59 9.48 22.50 0.21 -4.38 16 13 C -0.06 -2.91 7.31 22.54 0.16 -2.74 16 14 F -0.17 -7.69 17.26 44.97 0.78 -6.92 16 15 C -0.13 -6.04 9.94 22.06 0.22 -5.82 16 16 C -0.16 -7.98 8.61 22.45 0.19 -7.79 16 17 C 0.10 4.99 5.56 -21.12 -0.12 4.87 16 18 C -0.46 -22.74 7.12 23.34 0.17 -22.57 16 19 H 0.08 4.08 6.60 -2.91 -0.02 4.06 16 20 C 0.04 1.90 5.17 85.29 0.44 2.34 16 21 N -0.81 -39.44 10.96 21.85 0.24 -39.20 16 22 Si 0.97 35.66 29.59 68.60 2.03 37.69 16 23 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 24 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 C -0.11 -4.57 7.99 22.54 0.18 -4.39 16 27 C -0.11 -3.61 9.68 22.23 0.22 -3.40 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.87 6.54 -2.39 -0.02 0.86 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.92 6.54 -2.39 -0.02 0.91 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 1.41 6.36 -2.38 -0.02 1.40 16 38 H 0.07 1.45 6.36 -2.39 -0.02 1.43 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.12 4.22 8.05 -2.91 -0.02 4.19 16 41 H 0.12 4.98 8.04 -2.91 -0.02 4.96 16 42 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 43 H 0.12 6.12 6.22 -2.91 -0.02 6.11 16 44 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 45 H 0.11 4.82 7.30 -2.91 -0.02 4.80 16 46 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -57.01 378.34 6.51 -50.49 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.98 Total: 33.88 kcal Atomic # 6 Polarization: -68.43 SS G_CDS: 3.98 Total: -64.45 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.24 Total: -39.20 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.49 Total: -11.48 kcal Atomic # 9 Polarization: -7.69 SS G_CDS: 0.78 Total: -6.92 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -57.01 6.51 -50.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240942825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.481 kcal (2) G-P(sol) polarization free energy of solvation -57.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds