Wall clock time and date at job start Tue Mar 31 2020 14:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47064 * 2 1 4 4 C 1.52992 * 109.47521 * 239.99297 * 2 1 3 5 5 O 1.42903 * 109.46678 * 119.99368 * 2 1 3 6 6 C 1.42898 * 114.00055 * 60.00562 * 5 2 1 7 7 C 1.50703 * 109.47096 * 179.97438 * 6 5 2 8 8 C 1.38327 * 119.87691 * 90.00010 * 7 6 5 9 9 C 1.38019 * 120.12113 * 179.97438 * 8 7 6 10 10 C 1.39331 * 119.87489 * 0.02562 * 9 8 7 11 11 C 1.48402 * 120.11967 * 180.02562 * 10 9 8 12 12 C 1.39816 * 119.95886 * 359.97438 * 11 10 9 13 13 C 1.38237 * 120.41903 * 180.02562 * 12 11 10 14 14 C 1.38074 * 120.34755 * 0.27217 * 13 12 11 15 15 F 1.35097 * 120.04330 * 179.72873 * 14 13 12 16 16 C 1.41041 * 119.91176 * 359.43483 * 14 13 12 17 17 C 1.41329 * 120.20397 * 180.31842 * 16 14 13 18 18 H 1.07998 * 120.00022 * 24.84630 * 17 16 14 19 19 C 1.39919 * 119.99702 * 204.85357 * 17 16 14 20 20 N 1.30851 * 120.00065 * 17.80484 * 19 17 16 21 21 Si 1.86800 * 119.99656 * 197.79778 * 19 17 16 22 22 H 1.48500 * 109.46798 * 90.00190 * 21 19 17 23 23 H 1.48495 * 109.47177 * 209.99767 * 21 19 17 24 24 H 1.48496 * 109.47357 * 330.00352 * 21 19 17 25 25 C 1.38663 * 119.96640 * 179.97438 * 11 10 9 26 26 C 1.39333 * 119.76212 * 0.27196 * 10 9 8 27 27 C 1.38019 * 119.87753 * 359.42683 * 26 10 9 28 28 H 1.08992 * 109.47323 * 300.00536 * 1 2 3 29 29 H 1.09001 * 109.46788 * 60.00922 * 1 2 3 30 30 H 1.09010 * 109.46818 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47003 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46565 * 299.99214 * 3 2 1 33 33 H 1.08994 * 109.47663 * 59.99057 * 3 2 1 34 34 H 1.08997 * 109.47367 * 300.00382 * 4 2 1 35 35 H 1.09001 * 109.47269 * 60.00075 * 4 2 1 36 36 H 1.08998 * 109.47555 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.46983 * 59.99608 * 6 5 2 38 38 H 1.09002 * 109.47116 * 299.99451 * 6 5 2 39 39 H 1.08000 * 119.93759 * 359.97438 * 8 7 6 40 40 H 1.07995 * 120.06163 * 180.02562 * 9 8 7 41 41 H 1.07994 * 119.79776 * 359.97438 * 12 11 10 42 42 H 1.08000 * 119.82911 * 180.02562 * 13 12 11 43 43 H 0.97003 * 119.99625 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.17283 * 359.96813 * 25 11 10 45 45 H 1.08005 * 120.06573 * 179.72608 * 26 10 9 46 46 H 1.07999 * 119.94455 * 180.27203 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 1.5847 -2.0354 1.2647 7 6 2.1419 -2.6445 2.5255 8 6 1.4176 -2.5768 3.7020 9 6 1.9229 -3.1334 4.8595 10 6 3.1653 -3.7638 4.8415 11 6 3.7136 -4.3646 6.0828 12 6 2.9827 -4.2976 7.2728 13 6 3.4845 -4.8536 8.4347 14 6 4.7166 -5.4767 8.4343 15 9 5.2037 -6.0132 9.5745 16 6 5.4633 -5.5580 7.2405 17 6 6.7222 -6.2004 7.2315 18 1 6.9485 -6.9551 7.9701 19 6 7.6752 -5.8584 6.2659 20 7 7.5616 -4.7358 5.6033 21 14 9.1099 -7.0044 5.9227 22 1 8.7329 -7.9627 4.8528 23 1 10.2846 -6.2093 5.4836 24 1 9.4525 -7.7525 7.1589 25 6 4.9501 -4.9917 6.0611 26 6 3.8934 -3.8236 3.6550 27 6 3.3758 -3.2692 2.5020 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8898 34 1 1.6768 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1391 36 1 3.1301 -0.7217 -1.2488 37 1 1.9492 -2.5915 0.4010 38 1 0.4958 -2.0777 1.2909 39 1 0.4549 -2.0875 3.7148 40 1 1.3564 -3.0803 5.7774 41 1 2.0203 -3.8078 7.2846 42 1 2.9117 -4.7967 9.3485 43 1 8.2221 -4.4989 4.9336 44 1 5.5158 -5.0448 5.1427 45 1 4.8590 -4.3073 3.6365 46 1 3.9373 -3.3188 1.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240942902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:24 Heat of formation + Delta-G solvation = -67.319352 kcal Electronic energy + Delta-G solvation = -26716.200761 eV Core-core repulsion = 22870.101321 eV Total energy + Delta-G solvation = -3846.099441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -47.28242 -39.56391 -38.68811 -37.08473 -34.12936 -33.65943 -31.82800 -30.73070 -29.76427 -28.75732 -27.65711 -27.62055 -25.61604 -25.02045 -22.63214 -21.68650 -20.80040 -20.13778 -19.75544 -17.53757 -16.70499 -16.45024 -15.93412 -15.70990 -15.43927 -15.05533 -14.73849 -14.27779 -14.21033 -14.05044 -13.64148 -13.56942 -13.47268 -13.12631 -12.91936 -12.56466 -12.47753 -12.35822 -12.22204 -12.05267 -11.97218 -11.89425 -11.67354 -11.43982 -11.35635 -11.22032 -11.02787 -10.78244 -10.74186 -10.57573 -10.39065 -9.96761 -9.59995 -9.49311 -9.35541 -8.64577 -8.50781 -7.68396 -7.04918 -6.82755 -4.49858 1.36905 1.86014 2.63972 2.77352 3.01953 3.06365 3.10005 3.66917 3.84750 4.25589 4.56453 4.60774 4.60851 4.79086 5.02382 5.08347 5.17633 5.24949 5.33074 5.38999 5.40379 5.42890 5.49105 5.53086 5.56013 5.59266 5.67000 5.79161 5.81764 5.92953 5.99137 6.03791 6.05572 6.05948 6.27353 6.42310 6.50810 6.76522 6.80527 6.86009 6.94091 7.05822 7.20553 7.21563 7.32187 7.48813 7.49999 7.82670 7.86168 7.99966 8.41395 8.63986 8.72196 10.02925 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.002715 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.751235 B =10310.606572 C =11766.310795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.105 3.895 7 C -0.114 4.114 8 C -0.100 4.100 9 C -0.125 4.125 10 C -0.002 4.002 11 C -0.059 4.059 12 C -0.202 4.202 13 C -0.124 4.124 14 C -0.024 4.024 15 F -0.162 7.162 16 C 0.082 3.918 17 C -0.452 4.452 18 H 0.084 0.916 19 C 0.076 3.924 20 N -0.788 5.788 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.097 4.097 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.284 0.716 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 7.250 -13.176 18.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.288 6.288 6 C 0.029 3.971 7 C -0.114 4.114 8 C -0.118 4.118 9 C -0.143 4.143 10 C -0.002 4.002 11 C -0.059 4.059 12 C -0.221 4.221 13 C -0.143 4.143 14 C -0.044 4.044 15 F -0.142 7.142 16 C 0.079 3.921 17 C -0.481 4.481 18 H 0.102 0.898 19 C -0.143 4.143 20 N -0.413 5.413 21 Si 0.737 3.263 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.141 4.141 26 C -0.134 4.134 27 C -0.115 4.115 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.015 7.473 -13.176 18.159 hybrid contribution 0.588 -0.587 -0.122 0.840 sum -9.427 6.886 -13.298 17.695 Atomic orbital electron populations 1.22437 0.95954 1.02511 1.02696 1.21482 0.93007 0.93292 0.85756 1.21748 1.02093 0.93362 1.02259 1.22438 1.02376 1.01013 0.97825 1.88108 1.74384 1.23816 1.42511 1.21290 0.97779 0.82719 0.95284 1.19426 0.96200 1.01404 0.94356 1.20819 0.99507 0.99319 0.92158 1.21213 0.95966 0.99178 0.97974 1.19096 0.93100 0.94812 0.93194 1.18522 0.95473 1.00551 0.91347 1.20229 1.00537 1.09054 0.92301 1.20425 0.94933 1.00946 0.97962 1.17950 0.96628 1.07637 0.82191 1.91274 1.88609 1.85162 1.49118 1.17562 0.93068 0.92151 0.89366 1.19528 0.97150 1.19090 1.12325 0.89776 1.25920 0.99556 0.94595 0.94192 1.69810 1.34126 1.18653 1.18663 0.86222 0.79558 0.80619 0.79939 1.19050 1.20102 1.18427 1.21358 0.93414 1.00847 0.98466 1.21382 1.00301 0.99905 0.91811 1.20876 0.94577 0.97928 0.98143 0.91682 0.91698 0.92162 0.91743 0.91371 0.91792 0.92151 0.91700 0.91611 0.92695 0.92744 0.86712 0.85841 0.87991 0.87885 0.90466 0.84899 0.85090 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.25 37.16 0.31 -1.14 16 2 C 0.10 1.01 1.14 -90.62 -0.10 0.90 16 3 C -0.14 -1.19 8.84 37.16 0.33 -0.86 16 4 C -0.18 -1.50 8.25 37.15 0.31 -1.19 16 5 O -0.37 -4.83 9.97 -35.23 -0.35 -5.18 16 6 C 0.11 1.28 5.25 36.01 0.19 1.47 16 7 C -0.11 -1.71 5.51 -104.56 -0.58 -2.28 16 8 C -0.10 -1.52 9.68 -39.63 -0.38 -1.90 16 9 C -0.13 -2.15 9.43 -39.26 -0.37 -2.52 16 10 C 0.00 -0.04 5.88 -104.90 -0.62 -0.66 16 11 C -0.06 -1.32 5.87 -104.96 -0.62 -1.94 16 12 C -0.20 -4.34 9.43 -38.99 -0.37 -4.71 16 13 C -0.12 -2.79 9.99 -39.64 -0.40 -3.18 16 14 C -0.02 -0.60 7.31 -38.58 -0.28 -0.89 16 15 F -0.16 -4.11 16.70 2.25 0.04 -4.07 16 16 C 0.08 2.16 5.58 -106.79 -0.60 1.57 16 17 C -0.45 -11.93 8.77 -37.78 -0.33 -12.26 16 18 H 0.08 2.20 7.73 -52.49 -0.41 1.80 16 19 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.79 -19.50 10.96 55.55 0.61 -18.89 16 21 Si 0.91 18.28 29.60 -169.99 -5.03 13.25 16 22 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.12 -3.02 8.06 -38.56 -0.31 -3.34 16 26 C -0.12 -2.17 9.42 -39.25 -0.37 -2.54 16 27 C -0.10 -1.56 9.68 -39.63 -0.38 -1.95 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.48 6.54 -51.92 -0.34 0.14 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.60 6.36 -51.93 -0.33 0.27 16 38 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 39 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.12 1.94 6.19 -52.49 -0.32 1.61 16 41 H 0.10 1.89 6.18 -52.49 -0.32 1.57 16 42 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 44 H 0.13 3.31 4.29 -52.49 -0.23 3.08 16 45 H 0.13 2.53 6.20 -52.48 -0.33 2.21 16 46 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -27.86 375.88 -10.04 -37.90 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.31 Total: 6.96 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: -4.66 Total: -35.64 kcal Atomic # 7 Polarization: -19.50 SS G_CDS: 0.61 Total: -18.89 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.35 Total: -5.18 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -27.86 -10.04 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240942902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.422 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds