Wall clock time and date at job start Tue Mar 31 2020 14:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47064 * 2 1 4 4 C 1.52992 * 109.47521 * 239.99297 * 2 1 3 5 5 O 1.42903 * 109.46678 * 119.99368 * 2 1 3 6 6 C 1.42898 * 114.00055 * 60.00562 * 5 2 1 7 7 C 1.50703 * 109.47096 * 179.97438 * 6 5 2 8 8 C 1.38327 * 119.87691 * 90.00010 * 7 6 5 9 9 C 1.38019 * 120.12113 * 179.97438 * 8 7 6 10 10 C 1.39331 * 119.87489 * 0.02562 * 9 8 7 11 11 C 1.48402 * 120.11967 * 180.02562 * 10 9 8 12 12 C 1.39816 * 119.95886 * 359.97438 * 11 10 9 13 13 C 1.38237 * 120.41903 * 180.02562 * 12 11 10 14 14 C 1.38074 * 120.34755 * 0.27217 * 13 12 11 15 15 F 1.35097 * 120.04330 * 179.72873 * 14 13 12 16 16 C 1.41041 * 119.91176 * 359.43483 * 14 13 12 17 17 C 1.41329 * 120.20397 * 180.31842 * 16 14 13 18 18 H 1.07998 * 120.00022 * 24.84630 * 17 16 14 19 19 C 1.39919 * 119.99702 * 204.85357 * 17 16 14 20 20 N 1.30851 * 120.00065 * 17.80484 * 19 17 16 21 21 Si 1.86800 * 119.99656 * 197.79778 * 19 17 16 22 22 H 1.48500 * 109.46798 * 90.00190 * 21 19 17 23 23 H 1.48495 * 109.47177 * 209.99767 * 21 19 17 24 24 H 1.48496 * 109.47357 * 330.00352 * 21 19 17 25 25 C 1.38663 * 119.96640 * 179.97438 * 11 10 9 26 26 C 1.39333 * 119.76212 * 0.27196 * 10 9 8 27 27 C 1.38019 * 119.87753 * 359.42683 * 26 10 9 28 28 H 1.08992 * 109.47323 * 300.00536 * 1 2 3 29 29 H 1.09001 * 109.46788 * 60.00922 * 1 2 3 30 30 H 1.09010 * 109.46818 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47003 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46565 * 299.99214 * 3 2 1 33 33 H 1.08994 * 109.47663 * 59.99057 * 3 2 1 34 34 H 1.08997 * 109.47367 * 300.00382 * 4 2 1 35 35 H 1.09001 * 109.47269 * 60.00075 * 4 2 1 36 36 H 1.08998 * 109.47555 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.46983 * 59.99608 * 6 5 2 38 38 H 1.09002 * 109.47116 * 299.99451 * 6 5 2 39 39 H 1.08000 * 119.93759 * 359.97438 * 8 7 6 40 40 H 1.07995 * 120.06163 * 180.02562 * 9 8 7 41 41 H 1.07994 * 119.79776 * 359.97438 * 12 11 10 42 42 H 1.08000 * 119.82911 * 180.02562 * 13 12 11 43 43 H 0.97003 * 119.99625 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.17283 * 359.96813 * 25 11 10 45 45 H 1.08005 * 120.06573 * 179.72608 * 26 10 9 46 46 H 1.07999 * 119.94455 * 180.27203 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 1.5847 -2.0354 1.2647 7 6 2.1419 -2.6445 2.5255 8 6 1.4176 -2.5768 3.7020 9 6 1.9229 -3.1334 4.8595 10 6 3.1653 -3.7638 4.8415 11 6 3.7136 -4.3646 6.0828 12 6 2.9827 -4.2976 7.2728 13 6 3.4845 -4.8536 8.4347 14 6 4.7166 -5.4767 8.4343 15 9 5.2037 -6.0132 9.5745 16 6 5.4633 -5.5580 7.2405 17 6 6.7222 -6.2004 7.2315 18 1 6.9485 -6.9551 7.9701 19 6 7.6752 -5.8584 6.2659 20 7 7.5616 -4.7358 5.6033 21 14 9.1099 -7.0044 5.9227 22 1 8.7329 -7.9627 4.8528 23 1 10.2846 -6.2093 5.4836 24 1 9.4525 -7.7525 7.1589 25 6 4.9501 -4.9917 6.0611 26 6 3.8934 -3.8236 3.6550 27 6 3.3758 -3.2692 2.5020 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8898 34 1 1.6768 -1.7490 -1.2490 35 1 1.6768 -0.2076 -2.1391 36 1 3.1301 -0.7217 -1.2488 37 1 1.9492 -2.5915 0.4010 38 1 0.4958 -2.0777 1.2909 39 1 0.4549 -2.0875 3.7148 40 1 1.3564 -3.0803 5.7774 41 1 2.0203 -3.8078 7.2846 42 1 2.9117 -4.7967 9.3485 43 1 8.2221 -4.4989 4.9336 44 1 5.5158 -5.0448 5.1427 45 1 4.8590 -4.3073 3.6365 46 1 3.9373 -3.3188 1.5808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240942902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:22 Heat of formation + Delta-G solvation = -78.464877 kcal Electronic energy + Delta-G solvation = -26716.684068 eV Core-core repulsion = 22870.101321 eV Total energy + Delta-G solvation = -3846.582747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.23497 -40.73344 -39.82502 -38.68967 -35.81297 -34.73741 -33.15524 -32.17576 -31.48521 -30.17881 -28.40423 -28.25967 -27.39739 -26.30508 -24.16511 -23.14039 -22.44467 -21.35936 -20.85519 -19.32672 -18.16053 -17.48076 -17.43702 -17.21718 -16.76595 -16.43742 -16.12629 -16.00087 -15.42607 -15.40628 -15.02552 -14.67786 -14.52965 -14.38192 -14.22683 -14.09873 -13.79930 -13.74060 -13.40482 -13.25582 -13.02754 -12.86749 -12.81202 -12.74776 -12.62089 -12.54289 -12.32364 -12.19106 -12.11824 -11.89409 -11.70965 -11.37248 -11.25890 -11.13896 -10.42000 -10.17798 -9.81489 -9.55954 -8.82382 -8.57147 -6.45957 -0.09974 0.54656 0.86729 1.07863 1.34928 1.48218 1.48465 2.16442 2.48145 2.77758 3.17238 3.57006 3.81102 3.86100 3.92152 3.96525 4.00885 4.08458 4.15508 4.20245 4.26382 4.40426 4.41005 4.55607 4.64837 4.68314 4.73408 4.74729 4.85152 4.89965 4.95467 4.97345 4.99733 5.02865 5.07711 5.18977 5.20407 5.26000 5.36720 5.38662 5.39903 5.61923 5.63354 5.64699 5.70266 5.96744 6.04806 6.10759 6.16742 6.40533 6.51255 6.73368 6.82553 8.22056 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.002715 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.751235 B =10310.606572 C =11766.310795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.395 6.395 6 C 0.107 3.893 7 C -0.104 4.104 8 C -0.097 4.097 9 C -0.122 4.122 10 C -0.037 4.037 11 C -0.056 4.056 12 C -0.196 4.196 13 C -0.120 4.120 14 C -0.061 4.061 15 F -0.170 7.170 16 C 0.052 3.948 17 C -0.494 4.494 18 H 0.070 0.930 19 C 0.040 3.960 20 N -0.814 5.814 21 Si 0.984 3.016 22 H -0.257 1.257 23 H -0.262 1.262 24 H -0.263 1.263 25 C -0.146 4.146 26 C -0.130 4.130 27 C -0.101 4.101 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.293 0.707 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 8.610 -15.388 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.056 3.944 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.316 6.316 6 C 0.031 3.969 7 C -0.104 4.104 8 C -0.115 4.115 9 C -0.139 4.139 10 C -0.038 4.038 11 C -0.056 4.056 12 C -0.215 4.215 13 C -0.139 4.139 14 C -0.081 4.081 15 F -0.149 7.149 16 C 0.050 3.950 17 C -0.522 4.522 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.439 5.439 21 Si 0.804 3.196 22 H -0.181 1.181 23 H -0.186 1.186 24 H -0.187 1.187 25 C -0.165 4.165 26 C -0.148 4.148 27 C -0.119 4.119 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.104 0.896 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.278 8.847 -15.388 21.583 hybrid contribution 1.115 -0.847 0.442 1.469 sum -11.163 8.000 -14.946 20.298 Atomic orbital electron populations 1.22412 0.94525 1.02962 1.03391 1.21750 0.94185 0.93358 0.85074 1.21793 1.01438 0.93190 1.03111 1.22427 1.01725 1.01309 0.98027 1.88060 1.75168 1.24009 1.44337 1.21308 0.98826 0.82710 0.94043 1.19850 0.95219 0.99616 0.95756 1.21193 1.00642 0.98374 0.91278 1.21406 0.94763 0.98242 0.99536 1.19080 0.94968 0.97384 0.92320 1.18895 0.94530 0.98973 0.93229 1.20679 1.01601 1.07912 0.91326 1.20780 0.93940 0.99541 0.99644 1.18302 0.98220 1.09624 0.81966 1.91232 1.88934 1.85516 1.49268 1.17944 0.93726 0.92915 0.90458 1.19665 0.98433 1.20226 1.13908 0.91131 1.26716 1.01808 0.95820 0.93296 1.69845 1.35289 1.19745 1.18988 0.85178 0.76317 0.78515 0.79625 1.18098 1.18631 1.18735 1.21343 0.94832 1.02644 0.97724 1.21339 0.99831 1.00761 0.92886 1.21079 0.95414 0.97582 0.97837 0.92200 0.89863 0.91791 0.92845 0.89023 0.92457 0.91880 0.89778 0.92673 0.91468 0.90640 0.83381 0.84198 0.84235 0.84863 0.89605 0.85915 0.87171 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.25 71.98 0.59 -1.64 16 2 C 0.09 1.57 1.14 -10.80 -0.01 1.56 16 3 C -0.14 -2.09 8.84 71.98 0.64 -1.45 16 4 C -0.18 -2.47 8.25 71.98 0.59 -1.87 16 5 O -0.39 -9.34 9.97 -148.98 -1.49 -10.82 16 6 C 0.11 2.25 5.25 71.24 0.37 2.63 16 7 C -0.10 -2.86 5.51 -19.82 -0.11 -2.97 16 8 C -0.10 -2.63 9.68 22.24 0.22 -2.41 16 9 C -0.12 -3.89 9.43 22.48 0.21 -3.68 16 10 C -0.04 -1.48 5.88 -20.04 -0.12 -1.60 16 11 C -0.06 -2.57 5.87 -20.09 -0.12 -2.68 16 12 C -0.20 -8.27 9.43 22.65 0.21 -8.06 16 13 C -0.12 -5.40 9.99 22.23 0.22 -5.18 16 14 C -0.06 -3.22 7.31 22.92 0.17 -3.06 16 15 F -0.17 -9.00 16.70 44.97 0.75 -8.25 16 16 C 0.05 2.94 5.58 -21.27 -0.12 2.82 16 17 C -0.49 -27.69 8.77 23.44 0.21 -27.48 16 18 H 0.07 3.97 7.73 -2.91 -0.02 3.95 16 19 C 0.04 2.03 5.14 85.25 0.44 2.47 16 20 N -0.81 -42.09 10.96 21.82 0.24 -41.85 16 21 Si 0.98 38.63 29.60 68.60 2.03 40.66 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 C -0.15 -7.66 8.06 22.93 0.18 -7.47 16 26 C -0.13 -4.96 9.42 22.48 0.21 -4.74 16 27 C -0.10 -3.15 9.68 22.24 0.22 -2.94 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.76 6.54 -2.38 -0.02 0.75 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.83 6.54 -2.39 -0.02 0.82 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 1.26 6.36 -2.39 -0.02 1.24 16 38 H 0.08 1.29 6.36 -2.39 -0.02 1.28 16 39 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 40 H 0.14 3.91 6.19 -2.91 -0.02 3.89 16 41 H 0.14 4.75 6.18 -2.91 -0.02 4.73 16 42 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 44 H 0.12 6.55 4.29 -2.91 -0.01 6.54 16 45 H 0.11 4.56 6.20 -2.91 -0.02 4.55 16 46 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -63.97 375.88 6.54 -57.43 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.99 Total: 30.58 kcal Atomic # 6 Polarization: -71.77 SS G_CDS: 4.01 Total: -67.76 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.24 Total: -41.85 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.49 Total: -10.82 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 0.75 Total: -8.25 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -63.97 6.54 -57.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240942902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.037 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds