Wall clock time and date at job start Tue Mar 31 2020 14:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 C 1.52997 * 109.47282 * 239.99540 * 2 1 3 5 5 O 1.42901 * 109.47012 * 119.99778 * 2 1 3 6 6 C 1.42896 * 114.00192 * 59.99998 * 5 2 1 7 7 C 1.50696 * 109.47225 * 180.02562 * 6 5 2 8 8 C 1.38387 * 119.85428 * 89.99991 * 7 6 5 9 9 C 1.37939 * 120.15061 * 179.97438 * 8 7 6 10 10 C 1.39637 * 119.84576 * 0.02562 * 9 8 7 11 11 C 1.47892 * 120.14554 * 179.97438 * 10 9 8 12 12 C 1.39053 * 120.25799 * 309.99847 * 11 10 9 13 13 C 1.38159 * 120.17656 * 179.97438 * 12 11 10 14 14 C 1.38803 * 120.71236 * 0.02665 * 13 12 11 15 15 C 1.37742 * 120.52370 * 359.97438 * 14 13 12 16 16 F 1.35093 * 120.10253 * 180.02562 * 15 14 13 17 17 C 1.41032 * 119.79389 * 0.27145 * 15 14 13 18 18 C 1.40803 * 120.34449 * 179.70707 * 17 15 14 19 19 H 1.07994 * 120.00080 * 143.33056 * 18 17 15 20 20 C 1.40079 * 119.99810 * 323.32728 * 18 17 15 21 21 N 1.30793 * 119.99684 * 339.99486 * 20 18 17 22 22 Si 1.86794 * 120.00148 * 159.99362 * 20 18 17 23 23 H 1.48496 * 109.47158 * 90.00092 * 22 20 18 24 24 H 1.48499 * 109.47200 * 210.00000 * 22 20 18 25 25 H 1.48502 * 109.46759 * 330.00109 * 22 20 18 26 26 C 1.39639 * 119.70646 * 0.25331 * 10 9 8 27 27 C 1.37927 * 119.84703 * 359.46801 * 26 10 9 28 28 H 1.08998 * 109.47448 * 300.00361 * 1 2 3 29 29 H 1.09002 * 109.47027 * 60.00916 * 1 2 3 30 30 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46959 * 179.97438 * 3 2 1 32 32 H 1.09010 * 109.46759 * 299.99533 * 3 2 1 33 33 H 1.08998 * 109.47256 * 59.99522 * 3 2 1 34 34 H 1.09005 * 109.47400 * 300.00298 * 4 2 1 35 35 H 1.09003 * 109.46881 * 60.00298 * 4 2 1 36 36 H 1.09003 * 109.47263 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47340 * 60.00120 * 6 5 2 38 38 H 1.09006 * 109.47270 * 300.00216 * 6 5 2 39 39 H 1.07992 * 119.92769 * 359.97438 * 8 7 6 40 40 H 1.07991 * 120.07817 * 180.02562 * 9 8 7 41 41 H 1.07997 * 119.91052 * 0.02660 * 12 11 10 42 42 H 1.07997 * 119.64141 * 180.02562 * 13 12 11 43 43 H 1.08001 * 119.73323 * 179.97438 * 14 13 12 44 44 H 0.97004 * 119.99721 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.07162 * 179.72673 * 26 10 9 46 46 H 1.08005 * 119.92230 * 180.25382 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0354 1.2646 7 6 2.1410 -2.6442 2.5259 8 6 1.4150 -2.5759 3.7021 9 6 1.9182 -3.1316 4.8601 10 6 3.1633 -3.7635 4.8436 11 6 3.7093 -4.3609 6.0814 12 6 3.7455 -3.6225 7.2591 13 6 4.2555 -4.1824 8.4146 14 6 4.7378 -5.4840 8.4185 15 6 4.7159 -6.2417 7.2685 16 9 5.1871 -7.5077 7.2821 17 6 4.2049 -5.6899 6.0754 18 6 4.1827 -6.4520 4.8916 19 1 3.3570 -6.3550 4.2024 20 6 5.2317 -7.3359 4.6079 21 7 6.3893 -7.1879 5.1985 22 14 4.9774 -8.7259 3.3862 23 1 5.3335 -8.2578 2.0227 24 1 5.8420 -9.8749 3.7567 25 1 3.5543 -9.1498 3.4082 26 6 3.8931 -3.8237 3.6547 27 6 3.3756 -3.2690 2.5027 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.9491 -2.5916 0.4009 38 1 0.4957 -2.0777 1.2908 39 1 0.4524 -2.0866 3.7135 40 1 1.3505 -3.0780 5.7772 41 1 3.3733 -2.6087 7.2707 42 1 4.2791 -3.6012 9.3245 43 1 5.1334 -5.9058 9.3307 44 1 7.1159 -7.7997 5.0017 45 1 4.8587 -4.3071 3.6363 46 1 3.9373 -3.3185 1.5815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240943622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:32 Heat of formation + Delta-G solvation = -60.718121 kcal Electronic energy + Delta-G solvation = -27337.396706 eV Core-core repulsion = 23491.583516 eV Total energy + Delta-G solvation = -3845.813190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -47.01079 -39.39768 -38.51519 -36.93969 -33.79278 -33.69534 -31.78795 -30.40791 -29.62769 -28.77480 -27.61866 -27.58530 -25.72050 -24.79628 -22.10113 -21.57700 -20.81854 -20.05810 -19.72208 -17.50986 -16.60656 -16.38449 -15.69668 -15.54298 -15.33908 -14.69391 -14.36135 -14.30112 -14.18342 -14.03953 -13.76309 -13.53357 -13.46081 -12.89745 -12.73812 -12.65169 -12.35608 -12.17354 -12.14480 -11.92242 -11.90652 -11.68884 -11.43595 -11.34470 -11.30146 -11.18535 -10.87610 -10.72332 -10.64411 -10.45018 -10.33223 -10.16592 -9.49678 -9.48369 -9.11386 -8.30472 -8.21483 -7.37692 -7.15477 -6.88004 -4.46799 1.71346 2.11737 2.66036 2.74197 3.06536 3.08647 3.14512 3.76557 3.91275 4.47884 4.58626 4.64251 4.67790 4.86282 5.18654 5.24531 5.28651 5.31409 5.32551 5.44076 5.52654 5.56033 5.62369 5.64820 5.69387 5.73872 5.78725 5.87130 5.98118 6.04095 6.08436 6.09621 6.15596 6.31909 6.33280 6.51950 6.66624 6.75326 6.91746 7.03925 7.09713 7.17413 7.32181 7.35374 7.46418 7.48798 7.63891 7.79756 7.84187 8.08390 8.34695 8.67085 8.77789 10.10162 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.003220 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.752508 B = 8693.515847 C =10058.782156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.106 3.894 7 C -0.118 4.118 8 C -0.104 4.104 9 C -0.132 4.132 10 C 0.024 3.976 11 C -0.156 4.156 12 C -0.082 4.082 13 C -0.216 4.216 14 C -0.132 4.132 15 C 0.040 3.960 16 F -0.143 7.143 17 C 0.106 3.894 18 C -0.457 4.457 19 H 0.087 0.913 20 C 0.080 3.920 21 N -0.772 5.772 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.093 4.093 27 C -0.105 4.105 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.285 0.715 45 H 0.132 0.868 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 10.007 -9.296 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.288 6.288 6 C 0.031 3.969 7 C -0.118 4.118 8 C -0.122 4.122 9 C -0.150 4.150 10 C 0.024 3.976 11 C -0.157 4.157 12 C -0.100 4.100 13 C -0.235 4.235 14 C -0.152 4.152 15 C 0.019 3.981 16 F -0.122 7.122 17 C 0.103 3.897 18 C -0.485 4.485 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.395 5.395 22 Si 0.728 3.272 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.111 4.111 27 C -0.123 4.123 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.150 0.850 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.337 9.945 -9.157 15.381 hybrid contribution 0.010 -1.078 -0.642 1.255 sum -7.327 8.868 -9.799 15.111 Atomic orbital electron populations 1.22435 0.96024 1.02539 1.02594 1.21466 0.92970 0.93244 0.85882 1.21746 1.02031 0.93452 1.02178 1.22440 1.02346 1.01075 0.97797 1.88100 1.74381 1.24011 1.42359 1.21288 0.97667 0.82478 0.95512 1.19371 0.96406 1.01925 0.94141 1.20717 0.99319 0.99871 0.92288 1.21224 0.95842 1.00293 0.97676 1.18785 0.92348 0.93295 0.93153 1.18461 1.11770 0.93592 0.91927 1.20633 0.99302 0.97795 0.92276 1.20078 1.10324 0.95552 0.97549 1.20654 1.02837 0.95207 0.96460 1.17768 1.05924 0.80514 0.93875 1.91329 1.86544 1.37288 1.97031 1.17457 0.89791 0.90484 0.91977 1.19311 1.05639 1.18766 1.04754 0.89482 1.25826 0.94176 0.97425 0.96659 1.69740 1.01588 1.32883 1.35258 0.86354 0.79936 0.80595 0.80302 1.19403 1.20008 1.18328 1.21426 1.00546 0.97672 0.91476 1.20867 0.94755 0.98520 0.98192 0.91720 0.91783 0.92132 0.91794 0.91441 0.91846 0.92110 0.91786 0.91643 0.92821 0.92926 0.87158 0.86582 0.88438 0.88275 0.88124 0.90431 0.85022 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.25 37.16 0.31 -1.28 16 2 C 0.10 1.08 1.14 -90.62 -0.10 0.98 16 3 C -0.14 -1.25 8.84 37.16 0.33 -0.92 16 4 C -0.18 -1.65 8.25 37.16 0.31 -1.34 16 5 O -0.37 -5.13 9.97 -35.23 -0.35 -5.48 16 6 C 0.11 1.44 5.25 36.00 0.19 1.62 16 7 C -0.12 -1.95 5.52 -104.51 -0.58 -2.53 16 8 C -0.10 -1.72 9.68 -39.64 -0.38 -2.10 16 9 C -0.13 -2.44 9.52 -39.17 -0.37 -2.81 16 10 C 0.02 0.51 4.96 -104.90 -0.52 -0.01 16 11 C -0.16 -3.63 5.52 -104.27 -0.58 -4.20 16 12 C -0.08 -1.75 9.49 -39.31 -0.37 -2.13 16 13 C -0.22 -4.57 10.03 -39.40 -0.40 -4.97 16 14 C -0.13 -3.03 9.99 -39.55 -0.40 -3.43 16 15 C 0.04 1.02 6.68 -38.70 -0.26 0.76 16 16 F -0.14 -3.83 14.28 2.25 0.03 -3.80 16 17 C 0.11 2.73 5.40 -106.49 -0.57 2.16 16 18 C -0.46 -11.66 6.66 -37.92 -0.25 -11.91 16 19 H 0.09 2.19 7.22 -52.49 -0.38 1.81 16 20 C 0.08 1.99 4.50 -17.30 -0.08 1.92 16 21 N -0.77 -19.96 11.13 55.56 0.62 -19.34 16 22 Si 0.90 18.85 29.61 -169.99 -5.03 13.82 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 26 C -0.09 -1.92 8.22 -39.17 -0.32 -2.24 16 27 C -0.11 -1.88 9.68 -39.64 -0.38 -2.26 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 38 H 0.05 0.64 6.36 -51.93 -0.33 0.31 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 41 H 0.10 1.85 8.04 -52.49 -0.42 1.43 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 44 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 45 H 0.13 2.92 7.31 -52.49 -0.38 2.54 16 46 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -27.68 377.82 -10.20 -37.88 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.73 Total: 5.92 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: -4.43 Total: -34.69 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.62 Total: -19.34 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.35 Total: -5.48 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.03 Total: -3.80 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.68 -10.20 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240943622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.837 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds