Wall clock time and date at job start Tue Mar 31 2020 14:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 C 1.52997 * 109.47282 * 239.99540 * 2 1 3 5 5 O 1.42901 * 109.47012 * 119.99778 * 2 1 3 6 6 C 1.42896 * 114.00192 * 59.99998 * 5 2 1 7 7 C 1.50696 * 109.47225 * 180.02562 * 6 5 2 8 8 C 1.38387 * 119.85428 * 89.99991 * 7 6 5 9 9 C 1.37939 * 120.15061 * 179.97438 * 8 7 6 10 10 C 1.39637 * 119.84576 * 0.02562 * 9 8 7 11 11 C 1.47892 * 120.14554 * 179.97438 * 10 9 8 12 12 C 1.39053 * 120.25799 * 309.99847 * 11 10 9 13 13 C 1.38159 * 120.17656 * 179.97438 * 12 11 10 14 14 C 1.38803 * 120.71236 * 0.02665 * 13 12 11 15 15 C 1.37742 * 120.52370 * 359.97438 * 14 13 12 16 16 F 1.35093 * 120.10253 * 180.02562 * 15 14 13 17 17 C 1.41032 * 119.79389 * 0.27145 * 15 14 13 18 18 C 1.40803 * 120.34449 * 179.70707 * 17 15 14 19 19 H 1.07994 * 120.00080 * 143.33056 * 18 17 15 20 20 C 1.40079 * 119.99810 * 323.32728 * 18 17 15 21 21 N 1.30793 * 119.99684 * 339.99486 * 20 18 17 22 22 Si 1.86794 * 120.00148 * 159.99362 * 20 18 17 23 23 H 1.48496 * 109.47158 * 90.00092 * 22 20 18 24 24 H 1.48499 * 109.47200 * 210.00000 * 22 20 18 25 25 H 1.48502 * 109.46759 * 330.00109 * 22 20 18 26 26 C 1.39639 * 119.70646 * 0.25331 * 10 9 8 27 27 C 1.37927 * 119.84703 * 359.46801 * 26 10 9 28 28 H 1.08998 * 109.47448 * 300.00361 * 1 2 3 29 29 H 1.09002 * 109.47027 * 60.00916 * 1 2 3 30 30 H 1.09005 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46959 * 179.97438 * 3 2 1 32 32 H 1.09010 * 109.46759 * 299.99533 * 3 2 1 33 33 H 1.08998 * 109.47256 * 59.99522 * 3 2 1 34 34 H 1.09005 * 109.47400 * 300.00298 * 4 2 1 35 35 H 1.09003 * 109.46881 * 60.00298 * 4 2 1 36 36 H 1.09003 * 109.47263 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47340 * 60.00120 * 6 5 2 38 38 H 1.09006 * 109.47270 * 300.00216 * 6 5 2 39 39 H 1.07992 * 119.92769 * 359.97438 * 8 7 6 40 40 H 1.07991 * 120.07817 * 180.02562 * 9 8 7 41 41 H 1.07997 * 119.91052 * 0.02660 * 12 11 10 42 42 H 1.07997 * 119.64141 * 180.02562 * 13 12 11 43 43 H 1.08001 * 119.73323 * 179.97438 * 14 13 12 44 44 H 0.97004 * 119.99721 * 180.02562 * 21 20 18 45 45 H 1.08002 * 120.07162 * 179.72673 * 26 10 9 46 46 H 1.08005 * 119.92230 * 180.25382 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0354 1.2646 7 6 2.1410 -2.6442 2.5259 8 6 1.4150 -2.5759 3.7021 9 6 1.9182 -3.1316 4.8601 10 6 3.1633 -3.7635 4.8436 11 6 3.7093 -4.3609 6.0814 12 6 3.7455 -3.6225 7.2591 13 6 4.2555 -4.1824 8.4146 14 6 4.7378 -5.4840 8.4185 15 6 4.7159 -6.2417 7.2685 16 9 5.1871 -7.5077 7.2821 17 6 4.2049 -5.6899 6.0754 18 6 4.1827 -6.4520 4.8916 19 1 3.3570 -6.3550 4.2024 20 6 5.2317 -7.3359 4.6079 21 7 6.3893 -7.1879 5.1985 22 14 4.9774 -8.7259 3.3862 23 1 5.3335 -8.2578 2.0227 24 1 5.8420 -9.8749 3.7567 25 1 3.5543 -9.1498 3.4082 26 6 3.8931 -3.8237 3.6547 27 6 3.3756 -3.2690 2.5027 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 1.9491 -2.5916 0.4009 38 1 0.4957 -2.0777 1.2908 39 1 0.4524 -2.0866 3.7135 40 1 1.3505 -3.0780 5.7772 41 1 3.3733 -2.6087 7.2707 42 1 4.2791 -3.6012 9.3245 43 1 5.1334 -5.9058 9.3307 44 1 7.1159 -7.7997 5.0017 45 1 4.8587 -4.3071 3.6363 46 1 3.9373 -3.3185 1.5815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240943622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:29 Heat of formation + Delta-G solvation = -71.605796 kcal Electronic energy + Delta-G solvation = -27337.868831 eV Core-core repulsion = 23491.583516 eV Total energy + Delta-G solvation = -3846.285315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.97832 -40.61635 -39.76547 -38.53892 -35.56902 -34.75393 -33.18905 -31.93110 -31.30893 -30.30298 -28.44086 -28.25714 -27.36271 -26.24333 -23.61142 -23.11375 -22.55777 -21.33907 -20.83419 -19.36421 -18.01745 -17.44655 -17.22120 -16.97266 -16.67961 -16.25668 -16.03842 -15.80561 -15.71791 -15.43610 -15.18984 -14.59165 -14.52329 -14.35136 -14.14748 -13.97293 -13.87411 -13.36310 -13.20074 -13.11733 -13.00576 -12.89124 -12.83119 -12.72610 -12.61326 -12.45324 -12.38785 -12.13838 -12.10589 -11.92006 -11.74188 -11.37847 -11.22937 -10.93992 -10.40438 -9.86424 -9.68960 -9.17868 -8.89319 -8.69941 -6.36631 0.19580 0.66755 0.90295 1.00203 1.33395 1.42150 1.47524 2.17773 2.65128 2.73879 3.19877 3.50659 3.86760 3.93325 4.00264 4.06551 4.11089 4.17632 4.22153 4.27488 4.36337 4.43053 4.44919 4.64038 4.68627 4.71144 4.74660 4.79760 4.85103 4.91217 4.92676 4.97773 5.00177 5.12210 5.16375 5.21519 5.25137 5.30257 5.39341 5.40337 5.49341 5.66834 5.74034 5.76203 5.82120 5.93674 6.09223 6.23410 6.29015 6.42312 6.47652 6.82234 6.92037 8.29677 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.003220 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.752508 B = 8693.515847 C =10058.782156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.393 6.393 6 C 0.110 3.890 7 C -0.111 4.111 8 C -0.099 4.099 9 C -0.130 4.130 10 C -0.007 4.007 11 C -0.156 4.156 12 C -0.088 4.088 13 C -0.203 4.203 14 C -0.139 4.139 15 C -0.002 4.002 16 F -0.158 7.158 17 C 0.075 3.925 18 C -0.479 4.479 19 H 0.078 0.922 20 C 0.043 3.957 21 N -0.812 5.812 22 Si 0.964 3.036 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.260 1.260 26 C -0.110 4.110 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.144 0.856 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.120 0.880 44 H 0.287 0.713 45 H 0.100 0.900 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.937 12.052 -10.517 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.055 3.945 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.314 6.314 6 C 0.034 3.966 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.148 4.148 10 C -0.007 4.007 11 C -0.158 4.158 12 C -0.106 4.106 13 C -0.222 4.222 14 C -0.158 4.158 15 C -0.022 4.022 16 F -0.137 7.137 17 C 0.072 3.928 18 C -0.508 4.508 19 H 0.096 0.904 20 C -0.174 4.174 21 N -0.436 5.436 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.195 1.195 25 H -0.184 1.184 26 C -0.128 4.128 27 C -0.127 4.127 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.162 0.838 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.138 0.862 44 H 0.098 0.902 45 H 0.119 0.881 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.553 12.007 -10.377 18.524 hybrid contribution 0.611 -1.465 -0.250 1.607 sum -8.943 10.542 -10.627 17.437 Atomic orbital electron populations 1.22412 0.94626 1.02846 1.03415 1.21757 0.94144 0.93473 0.85077 1.21786 1.01458 0.92995 1.03149 1.22434 1.01727 1.01220 0.98148 1.88053 1.75126 1.23923 1.44255 1.21255 0.98601 0.82680 0.94053 1.19770 0.95335 1.00337 0.95646 1.21080 1.00383 0.98854 0.91397 1.21383 0.94771 0.99505 0.99165 1.18830 0.94017 0.95342 0.92521 1.18881 1.10270 0.92952 0.93670 1.21022 0.98919 0.98960 0.91740 1.20564 1.07854 0.94857 0.98920 1.20977 1.02655 0.95883 0.96294 1.18204 1.08032 0.80725 0.95224 1.91268 1.87011 1.38291 1.97173 1.17831 0.90975 0.91781 0.92257 1.19326 1.05951 1.20415 1.05111 0.90390 1.26537 0.93576 0.99135 0.98172 1.69795 1.02338 1.34053 1.37451 0.85453 0.79590 0.77797 0.78621 1.18179 1.19522 1.18418 1.21238 0.99851 0.98908 0.92783 1.21034 0.95685 0.98267 0.97738 0.92118 0.89809 0.92046 0.92769 0.89014 0.92346 0.92163 0.89709 0.92660 0.91892 0.90927 0.83843 0.85152 0.85497 0.84437 0.86179 0.90225 0.88138 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.25 71.98 0.59 -1.93 16 2 C 0.09 1.70 1.14 -10.80 -0.01 1.69 16 3 C -0.14 -2.17 8.84 71.98 0.64 -1.53 16 4 C -0.18 -2.81 8.25 71.98 0.59 -2.21 16 5 O -0.39 -10.02 9.97 -148.98 -1.49 -11.51 16 6 C 0.11 2.66 5.25 71.23 0.37 3.04 16 7 C -0.11 -3.44 5.52 -19.79 -0.11 -3.54 16 8 C -0.10 -3.03 9.68 22.23 0.22 -2.81 16 9 C -0.13 -4.61 9.52 22.54 0.21 -4.40 16 10 C -0.01 -0.30 4.96 -20.04 -0.10 -0.40 16 11 C -0.16 -7.40 5.52 -19.63 -0.11 -7.51 16 12 C -0.09 -3.69 9.49 22.45 0.21 -3.47 16 13 C -0.20 -8.26 10.03 22.39 0.22 -8.03 16 14 C -0.14 -6.38 9.99 22.29 0.22 -6.16 16 15 C 0.00 -0.09 6.68 22.84 0.15 0.07 16 16 F -0.16 -8.91 14.28 44.97 0.64 -8.26 16 17 C 0.07 4.00 5.40 -21.08 -0.11 3.89 16 18 C -0.48 -25.79 6.66 23.34 0.16 -25.64 16 19 H 0.08 4.16 7.22 -2.91 -0.02 4.14 16 20 C 0.04 2.22 4.50 85.29 0.38 2.61 16 21 N -0.81 -44.22 11.13 21.85 0.24 -43.98 16 22 Si 0.96 40.08 29.61 68.60 2.03 42.11 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C -0.11 -4.66 8.22 22.53 0.19 -4.48 16 27 C -0.11 -3.87 9.68 22.23 0.22 -3.66 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.87 6.54 -2.38 -0.02 0.85 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 0.95 6.54 -2.38 -0.02 0.93 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.41 6.36 -2.39 -0.02 1.40 16 38 H 0.07 1.48 6.36 -2.38 -0.02 1.47 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.13 4.16 8.04 -2.92 -0.02 4.13 16 41 H 0.13 4.49 8.04 -2.91 -0.02 4.47 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 43 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 45 H 0.10 4.82 7.31 -2.91 -0.02 4.80 16 46 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -62.97 377.82 6.34 -56.63 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.97 Total: 29.50 kcal Atomic # 6 Polarization: -68.43 SS G_CDS: 3.94 Total: -64.50 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.24 Total: -43.98 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.49 Total: -11.51 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.64 Total: -8.26 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -62.97 6.34 -56.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240943622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.973 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds