Wall clock time and date at job start Tue Mar 31 2020 14:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47195 * 2 1 4 4 C 1.53002 * 109.46891 * 240.00108 * 2 1 3 5 5 O 1.42895 * 109.47236 * 120.00371 * 2 1 3 6 6 C 1.42908 * 114.00170 * 59.99490 * 5 2 1 7 7 C 1.50701 * 109.47152 * 180.02562 * 6 5 2 8 8 C 1.38317 * 119.88071 * 269.72404 * 7 6 5 9 9 C 1.38023 * 120.12130 * 179.76526 * 8 7 6 10 10 C 1.39327 * 119.87322 * 0.51379 * 9 8 7 11 11 C 1.48415 * 120.11820 * 179.72395 * 10 9 8 12 12 C 1.39682 * 119.98918 * 180.02562 * 11 10 9 13 13 C 1.38629 * 120.35268 * 179.97438 * 12 11 10 14 14 F 1.35101 * 119.83510 * 179.97438 * 13 12 11 15 15 C 1.37931 * 120.32694 * 0.02562 * 13 12 11 16 16 C 1.40712 * 119.96815 * 359.97438 * 15 13 12 17 17 C 1.41427 * 120.17677 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00131 * 204.51460 * 17 16 15 19 19 C 1.39925 * 119.99801 * 24.51404 * 17 16 15 20 20 N 1.30833 * 120.00235 * 17.90613 * 19 17 16 21 21 Si 1.86803 * 120.00086 * 197.90617 * 19 17 16 22 22 H 1.48503 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47009 * 120.00171 * 21 19 17 24 24 H 1.48494 * 109.47241 * 239.99792 * 21 19 17 25 25 C 1.38741 * 119.98403 * 359.73968 * 11 10 9 26 26 C 1.39323 * 119.76539 * 359.74322 * 10 9 8 27 27 C 1.38027 * 119.87644 * 359.97438 * 26 10 9 28 28 H 1.09002 * 109.46622 * 299.99873 * 1 2 3 29 29 H 1.08998 * 109.47035 * 59.99472 * 1 2 3 30 30 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46855 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47560 * 300.00206 * 3 2 1 33 33 H 1.09002 * 109.47232 * 60.00500 * 3 2 1 34 34 H 1.09005 * 109.47091 * 300.00069 * 4 2 1 35 35 H 1.08998 * 109.46938 * 60.00361 * 4 2 1 36 36 H 1.08998 * 109.47072 * 180.02562 * 4 2 1 37 37 H 1.08993 * 109.47099 * 300.00214 * 6 5 2 38 38 H 1.08997 * 109.46509 * 60.00161 * 6 5 2 39 39 H 1.08004 * 119.93864 * 0.02562 * 8 7 6 40 40 H 1.07993 * 120.05935 * 180.25695 * 9 8 7 41 41 H 1.07999 * 119.82418 * 359.97438 * 12 11 10 42 42 H 1.08001 * 120.01957 * 179.97438 * 15 13 12 43 43 H 0.97001 * 120.00633 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.16212 * 0.02562 * 25 11 10 45 45 H 1.07997 * 120.06466 * 180.02562 * 26 10 9 46 46 H 1.07997 * 119.93875 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2644 7 6 2.1410 -2.6445 2.5257 8 6 3.3723 -3.2742 2.5018 9 6 3.8888 -3.8294 3.6551 10 6 3.1626 -3.7639 4.8424 11 6 3.7101 -4.3644 6.0843 12 6 2.9795 -4.2976 7.2730 13 6 3.4834 -4.8564 8.4373 14 9 2.7682 -4.7854 9.5812 15 6 4.7119 -5.4836 8.4338 16 6 5.4594 -5.5587 7.2440 17 6 6.7197 -6.2003 7.2356 18 1 7.4549 -5.9365 6.4898 19 6 7.0140 -7.1769 8.1935 20 7 6.0465 -7.7490 8.8631 21 14 8.7883 -7.6638 8.5163 22 1 9.6863 -6.8748 7.6352 23 1 9.1256 -7.3922 9.9368 24 1 8.9637 -9.1111 8.2340 25 6 4.9447 -4.9970 6.0628 26 6 1.9205 -3.1331 4.8595 27 6 1.4161 -2.5762 3.7017 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 0.4958 -2.0778 1.2907 38 1 1.9491 -2.5916 0.4006 39 1 3.9325 -3.3280 1.5800 40 1 4.8521 -4.3172 3.6363 41 1 2.0169 -3.8081 7.2851 42 1 5.0999 -5.9169 9.3438 43 1 6.2505 -8.4263 9.5269 44 1 5.5095 -5.0535 5.1441 45 1 1.3537 -3.0792 5.7772 46 1 0.4532 -2.0873 3.7137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240944397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:07 Heat of formation + Delta-G solvation = -68.416915 kcal Electronic energy + Delta-G solvation = -26375.936916 eV Core-core repulsion = 22529.789882 eV Total energy + Delta-G solvation = -3846.147035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -47.69121 -39.63948 -38.75350 -37.15723 -34.27668 -33.58721 -31.77103 -30.85668 -29.65462 -28.80375 -27.69773 -27.68559 -25.63424 -25.30360 -22.56300 -21.99816 -20.42982 -20.23136 -20.03771 -17.70635 -16.75319 -16.43813 -15.85734 -15.72999 -15.17930 -15.04457 -14.87177 -14.41458 -14.36357 -14.28260 -14.00043 -13.67401 -13.65054 -13.21642 -12.88390 -12.83611 -12.50081 -12.41421 -12.27265 -12.10461 -12.01472 -11.97790 -11.68377 -11.49442 -11.27755 -11.22897 -10.99134 -10.94881 -10.62369 -10.46087 -10.45299 -10.02499 -9.70823 -9.63856 -9.37064 -8.68990 -8.61385 -7.56669 -7.11103 -6.89324 -4.56051 1.28045 1.75226 2.58913 2.79405 3.01159 3.05414 3.07925 3.62453 3.82933 4.21130 4.51837 4.54874 4.56279 4.74472 4.94781 5.00321 5.11995 5.20892 5.22783 5.30453 5.32957 5.38282 5.44200 5.46441 5.51186 5.55032 5.62101 5.73506 5.75887 5.80780 5.90682 5.98951 5.99281 6.13233 6.25061 6.40175 6.56437 6.63691 6.75411 6.81843 6.85985 6.97930 7.11329 7.15205 7.29290 7.44952 7.57752 7.69770 7.80412 8.08627 8.42032 8.68830 8.70876 10.02794 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002302 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.630915 B =12162.158994 C =13224.578142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.179 4.179 5 O -0.369 6.369 6 C 0.104 3.896 7 C -0.111 4.111 8 C -0.098 4.098 9 C -0.118 4.118 10 C -0.006 4.006 11 C -0.016 4.016 12 C -0.260 4.260 13 C 0.105 3.895 14 F -0.166 7.166 15 C -0.194 4.194 16 C 0.125 3.875 17 C -0.455 4.455 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.207 4.207 26 C -0.121 4.121 27 C -0.099 4.099 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.284 0.716 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 10.357 -15.356 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.289 6.289 6 C 0.028 3.972 7 C -0.111 4.111 8 C -0.116 4.116 9 C -0.136 4.136 10 C -0.006 4.006 11 C -0.016 4.016 12 C -0.280 4.280 13 C 0.086 3.914 14 F -0.145 7.145 15 C -0.214 4.214 16 C 0.122 3.878 17 C -0.484 4.484 18 H 0.102 0.898 19 C -0.145 4.145 20 N -0.410 5.410 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.226 4.226 26 C -0.139 4.139 27 C -0.117 4.117 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.122 0.878 42 H 0.148 0.852 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.233 10.254 -15.008 19.563 hybrid contribution 0.366 -0.523 0.270 0.693 sum -6.867 9.731 -14.738 18.948 Atomic orbital electron populations 1.22438 0.95909 1.02541 1.02743 1.21488 0.93047 0.93284 0.85708 1.21749 1.02054 0.93343 1.02304 1.22440 1.02340 1.01027 0.97837 1.88098 1.74377 1.23776 1.42610 1.21298 0.97901 0.82759 0.95208 1.19450 0.96139 1.01128 0.94377 1.20878 0.94699 0.97895 0.98100 1.21304 1.00340 1.00129 0.91838 1.19092 0.93343 0.95064 0.93143 1.18076 0.94749 0.98298 0.90510 1.20287 1.02213 1.13198 0.92319 1.17559 0.91674 1.01181 0.80985 1.91341 1.78367 1.95148 1.49654 1.21376 0.94433 1.05094 1.00495 1.17306 0.92225 0.88861 0.89379 1.19619 0.99232 1.17181 1.12320 0.89753 1.25983 0.99500 0.94819 0.94161 1.69817 1.33803 1.18842 1.18503 0.86211 0.82066 0.78884 0.79350 1.18191 1.19542 1.19832 1.21164 0.96047 1.07741 0.97680 1.21263 0.95851 0.98691 0.98108 1.20858 0.99554 0.99162 0.92106 0.91659 0.91665 0.92147 0.91763 0.91333 0.91786 0.92141 0.91664 0.91626 0.92652 0.92598 0.86441 0.85314 0.87755 0.85203 0.90512 0.87736 0.85702 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.25 37.16 0.31 -1.06 16 2 C 0.10 0.94 1.14 -90.62 -0.10 0.84 16 3 C -0.14 -1.10 8.84 37.15 0.33 -0.77 16 4 C -0.18 -1.38 8.25 37.16 0.31 -1.07 16 5 O -0.37 -4.54 9.97 -35.23 -0.35 -4.89 16 6 C 0.10 1.19 5.26 36.01 0.19 1.38 16 7 C -0.11 -1.57 5.51 -104.56 -0.58 -2.14 16 8 C -0.10 -1.44 9.68 -39.63 -0.38 -1.82 16 9 C -0.12 -2.01 9.42 -39.26 -0.37 -2.38 16 10 C -0.01 -0.12 5.88 -104.90 -0.62 -0.74 16 11 C -0.02 -0.35 5.87 -104.98 -0.62 -0.97 16 12 C -0.26 -5.88 9.41 -38.90 -0.37 -6.25 16 13 C 0.11 2.58 7.28 -39.55 -0.29 2.29 16 14 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 15 C -0.19 -5.04 8.67 -38.76 -0.34 -5.38 16 16 C 0.13 3.22 5.57 -106.87 -0.60 2.63 16 17 C -0.45 -11.50 9.05 -37.74 -0.34 -11.84 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 19 C 0.07 1.80 5.13 -17.35 -0.09 1.71 16 20 N -0.79 -19.80 10.96 55.55 0.61 -19.19 16 21 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 22 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 25 C -0.21 -4.84 9.17 -38.52 -0.35 -5.20 16 26 C -0.12 -2.03 9.43 -39.26 -0.37 -2.40 16 27 C -0.10 -1.44 9.68 -39.63 -0.38 -1.83 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.56 6.36 -51.93 -0.33 0.23 16 38 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 39 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.13 2.11 6.20 -52.49 -0.33 1.78 16 41 H 0.10 2.12 6.18 -52.49 -0.32 1.79 16 42 H 0.13 3.51 6.15 -52.49 -0.32 3.18 16 43 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 44 H 0.10 2.24 6.19 -52.49 -0.32 1.92 16 45 H 0.13 1.99 6.19 -52.49 -0.32 1.67 16 46 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -27.53 376.61 -10.03 -37.56 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.32 Total: 6.82 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: -4.66 Total: -35.01 kcal Atomic # 7 Polarization: -19.80 SS G_CDS: 0.61 Total: -19.19 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.35 Total: -4.89 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.53 -10.03 -37.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240944397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.853 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds