Wall clock time and date at job start Tue Mar 31 2020 14:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47195 * 2 1 4 4 C 1.53002 * 109.46891 * 240.00108 * 2 1 3 5 5 O 1.42895 * 109.47236 * 120.00371 * 2 1 3 6 6 C 1.42908 * 114.00170 * 59.99490 * 5 2 1 7 7 C 1.50701 * 109.47152 * 180.02562 * 6 5 2 8 8 C 1.38317 * 119.88071 * 269.72404 * 7 6 5 9 9 C 1.38023 * 120.12130 * 179.76526 * 8 7 6 10 10 C 1.39327 * 119.87322 * 0.51379 * 9 8 7 11 11 C 1.48415 * 120.11820 * 179.72395 * 10 9 8 12 12 C 1.39682 * 119.98918 * 180.02562 * 11 10 9 13 13 C 1.38629 * 120.35268 * 179.97438 * 12 11 10 14 14 F 1.35101 * 119.83510 * 179.97438 * 13 12 11 15 15 C 1.37931 * 120.32694 * 0.02562 * 13 12 11 16 16 C 1.40712 * 119.96815 * 359.97438 * 15 13 12 17 17 C 1.41427 * 120.17677 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00131 * 204.51460 * 17 16 15 19 19 C 1.39925 * 119.99801 * 24.51404 * 17 16 15 20 20 N 1.30833 * 120.00235 * 17.90613 * 19 17 16 21 21 Si 1.86803 * 120.00086 * 197.90617 * 19 17 16 22 22 H 1.48503 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47009 * 120.00171 * 21 19 17 24 24 H 1.48494 * 109.47241 * 239.99792 * 21 19 17 25 25 C 1.38741 * 119.98403 * 359.73968 * 11 10 9 26 26 C 1.39323 * 119.76539 * 359.74322 * 10 9 8 27 27 C 1.38027 * 119.87644 * 359.97438 * 26 10 9 28 28 H 1.09002 * 109.46622 * 299.99873 * 1 2 3 29 29 H 1.08998 * 109.47035 * 59.99472 * 1 2 3 30 30 H 1.08995 * 109.47414 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46855 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47560 * 300.00206 * 3 2 1 33 33 H 1.09002 * 109.47232 * 60.00500 * 3 2 1 34 34 H 1.09005 * 109.47091 * 300.00069 * 4 2 1 35 35 H 1.08998 * 109.46938 * 60.00361 * 4 2 1 36 36 H 1.08998 * 109.47072 * 180.02562 * 4 2 1 37 37 H 1.08993 * 109.47099 * 300.00214 * 6 5 2 38 38 H 1.08997 * 109.46509 * 60.00161 * 6 5 2 39 39 H 1.08004 * 119.93864 * 0.02562 * 8 7 6 40 40 H 1.07993 * 120.05935 * 180.25695 * 9 8 7 41 41 H 1.07999 * 119.82418 * 359.97438 * 12 11 10 42 42 H 1.08001 * 120.01957 * 179.97438 * 15 13 12 43 43 H 0.97001 * 120.00633 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.16212 * 0.02562 * 25 11 10 45 45 H 1.07997 * 120.06466 * 180.02562 * 26 10 9 46 46 H 1.07997 * 119.93875 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2644 7 6 2.1410 -2.6445 2.5257 8 6 3.3723 -3.2742 2.5018 9 6 3.8888 -3.8294 3.6551 10 6 3.1626 -3.7639 4.8424 11 6 3.7101 -4.3644 6.0843 12 6 2.9795 -4.2976 7.2730 13 6 3.4834 -4.8564 8.4373 14 9 2.7682 -4.7854 9.5812 15 6 4.7119 -5.4836 8.4338 16 6 5.4594 -5.5587 7.2440 17 6 6.7197 -6.2003 7.2356 18 1 7.4549 -5.9365 6.4898 19 6 7.0140 -7.1769 8.1935 20 7 6.0465 -7.7490 8.8631 21 14 8.7883 -7.6638 8.5163 22 1 9.6863 -6.8748 7.6352 23 1 9.1256 -7.3922 9.9368 24 1 8.9637 -9.1111 8.2340 25 6 4.9447 -4.9970 6.0628 26 6 1.9205 -3.1331 4.8595 27 6 1.4161 -2.5762 3.7017 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 0.4958 -2.0778 1.2907 38 1 1.9491 -2.5916 0.4006 39 1 3.9325 -3.3280 1.5800 40 1 4.8521 -4.3172 3.6363 41 1 2.0169 -3.8081 7.2851 42 1 5.0999 -5.9169 9.3438 43 1 6.2505 -8.4263 9.5269 44 1 5.5095 -5.0535 5.1441 45 1 1.3537 -3.0792 5.7772 46 1 0.4532 -2.0873 3.7137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240944397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:05 Heat of formation + Delta-G solvation = -78.957197 kcal Electronic energy + Delta-G solvation = -26376.393977 eV Core-core repulsion = 22529.789882 eV Total energy + Delta-G solvation = -3846.604096 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.61505 -40.75574 -39.83353 -38.76698 -35.85805 -34.65584 -33.11155 -32.21742 -31.36194 -30.25589 -28.41400 -28.25542 -27.46507 -26.49562 -23.97487 -23.46941 -22.11840 -21.62018 -20.85695 -19.44404 -18.01594 -17.48892 -17.32251 -17.01851 -16.78266 -16.43332 -16.28155 -16.22639 -15.87702 -15.43055 -15.16418 -14.76027 -14.60477 -14.38478 -14.20884 -14.04016 -13.93640 -13.74362 -13.37982 -13.15868 -13.00059 -12.83930 -12.81536 -12.71800 -12.61456 -12.55109 -12.19815 -12.13956 -12.10188 -11.99653 -11.69907 -11.44444 -11.36602 -11.13306 -10.41977 -10.23759 -9.83853 -9.45079 -8.81098 -8.68874 -6.49086 -0.11637 0.52200 0.74537 1.13635 1.38450 1.49154 1.54726 2.17198 2.47780 2.76832 3.16749 3.57779 3.59071 3.82602 3.86244 3.96998 4.01696 4.07831 4.12773 4.17906 4.31583 4.39946 4.43875 4.57394 4.63167 4.68740 4.73883 4.75243 4.84052 4.86275 4.90637 4.97956 5.00199 5.02161 5.06714 5.15280 5.20670 5.22371 5.36340 5.39158 5.40115 5.52993 5.63654 5.64356 5.69388 5.91108 5.95050 6.06928 6.23300 6.40052 6.51879 6.79893 6.81424 8.23491 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002302 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.630915 B =12162.158994 C =13224.578142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 C -0.138 4.138 4 C -0.177 4.177 5 O -0.394 6.394 6 C 0.105 3.895 7 C -0.101 4.101 8 C -0.099 4.099 9 C -0.124 4.124 10 C -0.043 4.043 11 C -0.006 4.006 12 C -0.265 4.265 13 C 0.095 3.905 14 F -0.165 7.165 15 C -0.225 4.225 16 C 0.102 3.898 17 C -0.484 4.484 18 H 0.089 0.911 19 C 0.033 3.967 20 N -0.820 5.820 21 Si 0.987 3.013 22 H -0.252 1.252 23 H -0.266 1.266 24 H -0.264 1.264 25 C -0.222 4.222 26 C -0.124 4.124 27 C -0.099 4.099 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.291 0.709 44 H 0.118 0.882 45 H 0.129 0.871 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.953 11.444 -18.110 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.195 4.195 4 C -0.234 4.234 5 O -0.315 6.315 6 C 0.030 3.970 7 C -0.102 4.102 8 C -0.117 4.117 9 C -0.142 4.142 10 C -0.043 4.043 11 C -0.006 4.006 12 C -0.284 4.284 13 C 0.076 3.924 14 F -0.144 7.144 15 C -0.245 4.245 16 C 0.099 3.901 17 C -0.513 4.513 18 H 0.107 0.893 19 C -0.183 4.183 20 N -0.445 5.445 21 Si 0.807 3.193 22 H -0.176 1.176 23 H -0.191 1.191 24 H -0.189 1.189 25 C -0.241 4.241 26 C -0.142 4.142 27 C -0.117 4.117 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.147 0.853 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.930 11.352 -17.771 22.529 hybrid contribution 0.431 -0.731 0.956 1.279 sum -7.498 10.621 -16.814 21.254 Atomic orbital electron populations 1.22421 0.94759 1.02904 1.03315 1.21745 0.94022 0.93414 0.85149 1.21791 1.01546 0.93126 1.03041 1.22425 1.01859 1.01268 0.97881 1.88053 1.75062 1.23969 1.44374 1.21320 0.98763 0.82807 0.94135 1.19878 0.95432 0.99425 0.95423 1.21157 0.95180 0.97140 0.98184 1.21392 1.00306 1.00329 0.92128 1.19029 0.95066 0.97738 0.92427 1.18404 0.93873 0.96591 0.91776 1.20567 1.03199 1.12907 0.91777 1.17748 0.91500 1.01418 0.81738 1.91328 1.78191 1.95158 1.49705 1.21277 0.95765 1.07300 1.00207 1.17654 0.92854 0.89549 0.90042 1.19913 0.99556 1.18150 1.13644 0.89259 1.26903 1.03893 0.94234 0.93278 1.69881 1.36123 1.19419 1.19062 0.85081 0.76228 0.78792 0.79200 1.17555 1.19108 1.18855 1.21360 0.97007 1.08208 0.97510 1.21381 0.95094 0.98398 0.99287 1.21163 1.00623 0.98497 0.91404 0.92349 0.89903 0.91857 0.92616 0.89104 0.92572 0.91867 0.89890 0.92400 0.90997 0.91075 0.83958 0.85505 0.85428 0.87140 0.89780 0.86450 0.85306 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.25 71.98 0.59 -1.55 16 2 C 0.10 1.45 1.14 -10.79 -0.01 1.44 16 3 C -0.14 -1.90 8.84 71.98 0.64 -1.27 16 4 C -0.18 -2.18 8.25 71.98 0.59 -1.58 16 5 O -0.39 -8.64 9.97 -148.98 -1.49 -10.12 16 6 C 0.11 2.06 5.26 71.24 0.37 2.43 16 7 C -0.10 -2.58 5.51 -19.83 -0.11 -2.69 16 8 C -0.10 -2.69 9.68 22.24 0.22 -2.47 16 9 C -0.12 -4.09 9.42 22.48 0.21 -3.88 16 10 C -0.04 -1.59 5.88 -20.04 -0.12 -1.71 16 11 C -0.01 -0.28 5.87 -20.10 -0.12 -0.39 16 12 C -0.26 -12.17 9.41 22.71 0.21 -11.95 16 13 C 0.09 4.83 7.28 22.29 0.16 5.00 16 14 F -0.16 -8.03 17.26 44.97 0.78 -7.25 16 15 C -0.23 -12.36 8.67 22.80 0.20 -12.16 16 16 C 0.10 5.48 5.57 -21.32 -0.12 5.36 16 17 C -0.48 -25.37 9.05 23.46 0.21 -25.16 16 18 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 19 C 0.03 1.63 5.13 85.25 0.44 2.07 16 20 N -0.82 -42.87 10.96 21.82 0.24 -42.63 16 21 Si 0.99 37.21 29.60 68.60 2.03 39.24 16 22 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 25 C -0.22 -10.71 9.17 22.96 0.21 -10.50 16 26 C -0.12 -3.98 9.43 22.48 0.21 -3.77 16 27 C -0.10 -2.64 9.68 22.24 0.22 -2.42 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.73 6.54 -2.39 -0.02 0.71 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.74 6.54 -2.38 -0.02 0.72 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.18 6.36 -2.39 -0.02 1.16 16 38 H 0.07 1.18 6.36 -2.39 -0.02 1.17 16 39 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 40 H 0.13 4.13 6.20 -2.91 -0.02 4.12 16 41 H 0.13 5.13 6.18 -2.91 -0.02 5.12 16 42 H 0.11 6.37 6.15 -2.91 -0.02 6.35 16 43 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 44 H 0.12 5.19 6.19 -2.91 -0.02 5.17 16 45 H 0.13 3.93 6.19 -2.91 -0.02 3.91 16 46 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -61.63 376.61 6.57 -55.07 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.99 Total: 30.91 kcal Atomic # 6 Polarization: -69.21 SS G_CDS: 4.01 Total: -65.20 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.24 Total: -42.63 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.49 Total: -10.12 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.78 Total: -7.25 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -61.63 6.57 -55.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240944397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.892 kcal (2) G-P(sol) polarization free energy of solvation -61.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds