Wall clock time and date at job start Tue Mar 31 2020 16:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 N 1.46507 * 109.47326 * 185.03615 * 3 2 1 5 5 N 1.40069 * 126.14263 * 274.86918 * 4 3 2 6 6 C 1.30924 * 108.51949 * 179.97438 * 5 4 3 7 7 C 1.50697 * 125.68927 * 180.02562 * 6 5 4 8 8 C 1.39447 * 108.61728 * 359.76068 * 6 5 4 9 9 C 1.36350 * 126.14709 * 94.83683 * 4 3 2 10 10 C 1.47850 * 126.34746 * 0.02562 * 9 4 3 11 11 C 1.39901 * 119.56832 * 336.67427 * 10 9 4 12 12 C 1.37739 * 121.14374 * 179.97438 * 11 10 9 13 13 C 1.39565 * 120.21156 * 0.02562 * 12 11 10 14 14 C 1.47102 * 120.42918 * 180.02562 * 13 12 11 15 15 O 1.21551 * 119.99875 * 175.51060 * 14 13 12 16 16 O 1.34832 * 119.99693 * 355.50192 * 14 13 12 17 17 C 1.45197 * 116.99871 * 180.02562 * 16 14 13 18 18 C 1.46518 * 119.14292 * 359.97438 * 13 12 11 19 19 C 1.40922 * 120.54084 * 180.02562 * 18 13 12 20 20 H 1.08001 * 119.99830 * 322.60075 * 19 18 13 21 21 C 1.40275 * 119.99840 * 142.60978 * 19 18 13 22 22 N 1.30630 * 119.99508 * 173.31517 * 21 19 18 23 23 Si 1.86794 * 120.00398 * 353.30517 * 21 19 18 24 24 H 1.48501 * 109.46923 * 89.24637 * 23 21 19 25 25 H 1.48497 * 109.47481 * 209.24457 * 23 21 19 26 26 H 1.48500 * 109.47380 * 329.24599 * 23 21 19 27 27 C 1.38944 * 119.55976 * 156.65961 * 10 9 4 28 28 H 1.08998 * 109.47353 * 60.00048 * 1 2 3 29 29 H 1.09004 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47137 * 299.99930 * 1 2 3 31 31 H 1.09000 * 109.47107 * 239.99283 * 2 1 3 32 32 H 1.09004 * 109.46935 * 119.99905 * 2 1 3 33 33 H 1.08997 * 109.47486 * 65.03617 * 3 2 1 34 34 H 1.09000 * 109.47278 * 305.03324 * 3 2 1 35 35 H 1.08999 * 109.47211 * 89.97871 * 7 6 5 36 36 H 1.09001 * 109.46946 * 209.97474 * 7 6 5 37 37 H 1.09001 * 109.47412 * 329.97479 * 7 6 5 38 38 H 1.07995 * 126.07490 * 180.28510 * 8 6 5 39 39 H 1.08007 * 119.42616 * 359.97438 * 11 10 9 40 40 H 1.07998 * 119.88830 * 180.28302 * 12 11 10 41 41 H 1.09000 * 109.47033 * 300.00393 * 17 16 14 42 42 H 1.08998 * 109.47552 * 60.00319 * 17 16 14 43 43 H 1.08996 * 109.47474 * 180.02562 * 17 16 14 44 44 H 0.97000 * 120.00035 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.14436 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4443 -0.1213 5 7 4.4165 1.3164 0.9303 6 6 5.6273 1.3626 0.4345 7 6 6.9058 1.2607 1.2258 8 6 5.5366 1.5157 -0.9486 9 6 4.2108 1.5702 -1.2780 10 6 3.6515 1.7301 -2.6372 11 6 2.3519 1.2870 -2.9055 12 6 1.7985 1.4203 -4.1598 13 6 2.5328 2.0047 -5.1928 14 6 1.9463 2.1499 -6.5340 15 8 2.5605 2.7327 -7.4061 16 8 0.7274 1.6364 -6.7960 17 6 0.2113 1.8168 -8.1411 18 6 3.8949 2.4727 -4.9240 19 6 4.6624 3.0676 -5.9452 20 1 4.5969 2.6948 -6.9567 21 6 5.5114 4.1439 -5.6479 22 7 6.3188 4.6107 -6.5626 23 14 5.4874 4.9097 -3.9444 24 1 6.4587 4.2039 -3.0706 25 1 5.8598 6.3440 -4.0410 26 1 4.1244 4.7901 -3.3670 27 6 4.4234 2.3189 -3.6312 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7522 1.9297 0.9316 34 1 1.6049 1.9817 -0.8415 35 1 7.2049 0.2152 1.2999 36 1 7.6897 1.8281 0.7242 37 1 6.7475 1.6651 2.2255 38 1 6.3661 1.5814 -1.6369 39 1 1.7726 0.8324 -2.1154 40 1 0.7917 1.0752 -4.3432 41 1 0.1340 2.8816 -8.3608 42 1 0.8869 1.3466 -8.8556 43 1 -0.7745 1.3580 -8.2167 44 1 6.9062 5.3548 -6.3570 45 1 5.4253 2.6566 -3.4112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241765578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:55 Heat of formation + Delta-G solvation = 1.613742 kcal Electronic energy + Delta-G solvation = -28065.944352 eV Core-core repulsion = 24242.754036 eV Total energy + Delta-G solvation = -3823.190316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.92352 -39.37522 -37.51700 -35.68257 -35.30513 -33.89400 -32.48586 -31.39886 -30.74822 -28.90641 -28.37150 -27.04361 -25.54877 -25.22475 -23.22222 -21.73194 -21.56392 -20.34358 -19.71795 -18.93111 -17.61549 -17.10236 -16.39477 -16.11883 -15.52721 -15.41088 -14.97467 -14.92992 -14.26265 -13.96030 -13.85986 -13.60966 -13.31528 -13.06468 -12.93320 -12.73451 -12.60334 -12.50543 -12.29987 -12.19335 -11.99103 -11.85626 -11.65645 -11.50705 -11.25120 -11.09020 -10.92374 -10.90051 -10.71737 -10.43384 -10.21130 -10.06666 -9.94052 -9.46235 -9.10876 -9.03772 -8.35959 -7.90215 -7.48205 -7.16209 -4.75103 1.29685 2.38789 2.43557 2.73067 2.97483 3.04640 3.07561 3.17894 3.59426 3.73755 3.79008 4.35122 4.63033 4.82537 4.93253 4.97975 5.09967 5.18474 5.34500 5.40812 5.48920 5.52329 5.60918 5.62940 5.68598 5.70771 5.73765 5.83160 5.86288 5.92024 5.95178 6.03218 6.11713 6.17513 6.21338 6.29238 6.34621 6.57092 6.88183 6.89922 6.99972 7.11622 7.16780 7.32541 7.39798 7.52128 7.72484 8.05606 8.16067 8.31243 8.52272 8.91994 9.79789 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.005244 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.152037 B = 5338.596571 C = 7752.190924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.126 3.874 4 N -0.368 5.368 5 N -0.304 5.304 6 C 0.066 3.934 7 C -0.068 4.068 8 C -0.265 4.265 9 C 0.143 3.857 10 C 0.020 3.980 11 C -0.267 4.267 12 C -0.009 4.009 13 C -0.241 4.241 14 C 0.500 3.500 15 O -0.505 6.505 16 O -0.374 6.374 17 C 0.041 3.959 18 C 0.118 3.882 19 C -0.378 4.378 20 H 0.118 0.882 21 C 0.078 3.922 22 N -0.776 5.776 23 Si 0.904 3.096 24 H -0.259 1.259 25 H -0.284 1.284 26 H -0.241 1.241 27 C -0.193 4.193 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.146 0.854 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.293 0.707 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -4.952 9.394 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.005 3.995 4 N -0.150 5.150 5 N -0.127 5.127 6 C -0.099 4.099 7 C -0.127 4.127 8 C -0.294 4.294 9 C 0.018 3.982 10 C 0.017 3.983 11 C -0.286 4.286 12 C -0.028 4.028 13 C -0.244 4.244 14 C 0.349 3.651 15 O -0.395 6.395 16 O -0.293 6.293 17 C -0.054 4.054 18 C 0.114 3.886 19 C -0.404 4.404 20 H 0.136 0.864 21 C -0.145 4.145 22 N -0.398 5.398 23 Si 0.729 3.271 24 H -0.184 1.184 25 H -0.211 1.211 26 H -0.164 1.164 27 C -0.213 4.213 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.164 0.836 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.667 -4.705 10.048 12.944 hybrid contribution 0.522 0.518 -0.392 0.833 sum -6.146 -4.187 9.656 12.188 Atomic orbital electron populations 1.21706 0.94421 1.02312 1.02282 1.21991 0.96565 0.96133 1.03462 1.21980 0.74643 0.98458 1.04462 1.48770 1.05814 1.56836 1.03550 1.77139 0.98209 1.26089 1.11225 1.22094 0.94007 1.00213 0.93564 1.20128 0.91248 1.02546 0.98793 1.21334 0.95546 1.17297 0.95229 1.20038 0.91277 0.99402 0.87517 1.17794 0.94018 0.98443 0.88002 1.20604 0.96079 1.14127 0.97790 1.20816 0.97464 0.92676 0.91832 1.19721 0.94994 1.19280 0.90368 1.21174 0.78239 0.76289 0.89355 1.90821 1.60803 1.40207 1.47660 1.86566 1.35704 1.73998 1.33042 1.22995 0.98453 1.01747 0.82178 1.18358 0.88998 0.90076 0.91198 1.20063 1.12385 1.09462 0.98465 0.86388 1.26387 0.91857 0.96717 0.99490 1.69524 1.14466 1.20411 1.35438 0.86425 0.82014 0.77513 0.81148 1.18422 1.21123 1.16407 1.21141 0.99381 1.07329 0.93426 0.91929 0.92094 0.92521 0.90579 0.91255 0.89537 0.87522 0.90844 0.90607 0.91310 0.83593 0.86874 0.86917 0.92670 0.92652 0.89323 0.89628 0.86614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.14 -1.71 5.46 -26.73 -0.15 -1.85 16 3 C 0.13 1.74 5.57 -4.04 -0.02 1.71 16 4 N -0.37 -6.40 3.66 -57.41 -0.21 -6.61 16 5 N -0.30 -5.35 12.56 33.60 0.42 -4.93 16 6 C 0.07 1.10 7.19 -82.53 -0.59 0.50 16 7 C -0.07 -0.82 10.44 36.00 0.38 -0.44 16 8 C -0.27 -4.87 10.08 -39.68 -0.40 -5.27 16 9 C 0.14 2.76 6.70 -82.48 -0.55 2.21 16 10 C 0.02 0.41 5.80 -105.08 -0.61 -0.20 16 11 C -0.27 -5.00 8.36 -39.14 -0.33 -5.33 16 12 C -0.01 -0.19 9.59 -39.27 -0.38 -0.56 16 13 C -0.24 -5.49 6.07 -102.47 -0.62 -6.11 16 14 C 0.50 11.37 7.86 34.33 0.27 11.64 16 15 O -0.51 -12.90 13.62 -19.30 -0.26 -13.16 16 16 O -0.37 -7.11 9.84 -40.85 -0.40 -7.51 16 17 C 0.04 0.60 10.57 101.05 1.07 1.67 16 18 C 0.12 2.89 5.19 -104.69 -0.54 2.35 16 19 C -0.38 -9.97 8.25 -37.80 -0.31 -10.28 16 20 H 0.12 3.43 6.40 -52.49 -0.34 3.09 16 21 C 0.08 1.97 5.50 -17.30 -0.10 1.88 16 22 N -0.78 -19.82 13.92 55.56 0.77 -19.05 16 23 Si 0.90 19.85 24.48 -169.99 -4.16 15.69 16 24 H -0.26 -5.40 6.67 56.52 0.38 -5.03 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.24 -5.48 6.71 56.52 0.38 -5.10 16 27 C -0.19 -4.34 6.48 -38.47 -0.25 -4.59 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.02 6.93 -51.93 -0.36 0.66 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.11 1.48 5.82 -51.93 -0.30 1.18 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.15 2.55 7.74 -52.49 -0.41 2.15 16 39 H 0.11 1.80 3.34 -52.48 -0.18 1.62 16 40 H 0.11 1.92 7.62 -52.49 -0.40 1.52 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 45 H 0.12 2.58 4.19 -52.49 -0.22 2.36 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -29.74 367.46 -7.10 -36.84 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.03 Total: 6.89 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.77 Total: -13.70 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.99 Total: -30.59 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.66 Total: -20.68 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.16 Total: 15.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.74 -7.10 -36.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241765578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.455 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds