Wall clock time and date at job start Tue Mar 31 2020 16:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 N 1.46507 * 109.47326 * 185.03615 * 3 2 1 5 5 N 1.40069 * 126.14263 * 274.86918 * 4 3 2 6 6 C 1.30924 * 108.51949 * 179.97438 * 5 4 3 7 7 C 1.50697 * 125.68927 * 180.02562 * 6 5 4 8 8 C 1.39447 * 108.61728 * 359.76068 * 6 5 4 9 9 C 1.36350 * 126.14709 * 94.83683 * 4 3 2 10 10 C 1.47850 * 126.34746 * 0.02562 * 9 4 3 11 11 C 1.39901 * 119.56832 * 336.67427 * 10 9 4 12 12 C 1.37739 * 121.14374 * 179.97438 * 11 10 9 13 13 C 1.39565 * 120.21156 * 0.02562 * 12 11 10 14 14 C 1.47102 * 120.42918 * 180.02562 * 13 12 11 15 15 O 1.21551 * 119.99875 * 175.51060 * 14 13 12 16 16 O 1.34832 * 119.99693 * 355.50192 * 14 13 12 17 17 C 1.45197 * 116.99871 * 180.02562 * 16 14 13 18 18 C 1.46518 * 119.14292 * 359.97438 * 13 12 11 19 19 C 1.40922 * 120.54084 * 180.02562 * 18 13 12 20 20 H 1.08001 * 119.99830 * 322.60075 * 19 18 13 21 21 C 1.40275 * 119.99840 * 142.60978 * 19 18 13 22 22 N 1.30630 * 119.99508 * 173.31517 * 21 19 18 23 23 Si 1.86794 * 120.00398 * 353.30517 * 21 19 18 24 24 H 1.48501 * 109.46923 * 89.24637 * 23 21 19 25 25 H 1.48497 * 109.47481 * 209.24457 * 23 21 19 26 26 H 1.48500 * 109.47380 * 329.24599 * 23 21 19 27 27 C 1.38944 * 119.55976 * 156.65961 * 10 9 4 28 28 H 1.08998 * 109.47353 * 60.00048 * 1 2 3 29 29 H 1.09004 * 109.47385 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47137 * 299.99930 * 1 2 3 31 31 H 1.09000 * 109.47107 * 239.99283 * 2 1 3 32 32 H 1.09004 * 109.46935 * 119.99905 * 2 1 3 33 33 H 1.08997 * 109.47486 * 65.03617 * 3 2 1 34 34 H 1.09000 * 109.47278 * 305.03324 * 3 2 1 35 35 H 1.08999 * 109.47211 * 89.97871 * 7 6 5 36 36 H 1.09001 * 109.46946 * 209.97474 * 7 6 5 37 37 H 1.09001 * 109.47412 * 329.97479 * 7 6 5 38 38 H 1.07995 * 126.07490 * 180.28510 * 8 6 5 39 39 H 1.08007 * 119.42616 * 359.97438 * 11 10 9 40 40 H 1.07998 * 119.88830 * 180.28302 * 12 11 10 41 41 H 1.09000 * 109.47033 * 300.00393 * 17 16 14 42 42 H 1.08998 * 109.47552 * 60.00319 * 17 16 14 43 43 H 1.08996 * 109.47474 * 180.02562 * 17 16 14 44 44 H 0.97000 * 120.00035 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.14436 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5000 1.4443 -0.1213 5 7 4.4165 1.3164 0.9303 6 6 5.6273 1.3626 0.4345 7 6 6.9058 1.2607 1.2258 8 6 5.5366 1.5157 -0.9486 9 6 4.2108 1.5702 -1.2780 10 6 3.6515 1.7301 -2.6372 11 6 2.3519 1.2870 -2.9055 12 6 1.7985 1.4203 -4.1598 13 6 2.5328 2.0047 -5.1928 14 6 1.9463 2.1499 -6.5340 15 8 2.5605 2.7327 -7.4061 16 8 0.7274 1.6364 -6.7960 17 6 0.2113 1.8168 -8.1411 18 6 3.8949 2.4727 -4.9240 19 6 4.6624 3.0676 -5.9452 20 1 4.5969 2.6948 -6.9567 21 6 5.5114 4.1439 -5.6479 22 7 6.3188 4.6107 -6.5626 23 14 5.4874 4.9097 -3.9444 24 1 6.4587 4.2039 -3.0706 25 1 5.8598 6.3440 -4.0410 26 1 4.1244 4.7901 -3.3670 27 6 4.4234 2.3189 -3.6312 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7522 1.9297 0.9316 34 1 1.6049 1.9817 -0.8415 35 1 7.2049 0.2152 1.2999 36 1 7.6897 1.8281 0.7242 37 1 6.7475 1.6651 2.2255 38 1 6.3661 1.5814 -1.6369 39 1 1.7726 0.8324 -2.1154 40 1 0.7917 1.0752 -4.3432 41 1 0.1340 2.8816 -8.3608 42 1 0.8869 1.3466 -8.8556 43 1 -0.7745 1.3580 -8.2167 44 1 6.9062 5.3548 -6.3570 45 1 5.4253 2.6566 -3.4112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241765578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:53 Heat of formation + Delta-G solvation = -14.767409 kcal Electronic energy + Delta-G solvation = -28066.654692 eV Core-core repulsion = 24242.754036 eV Total energy + Delta-G solvation = -3823.900656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.27513 -41.08422 -39.18152 -37.15017 -36.66163 -35.65983 -33.77094 -32.78516 -32.49930 -30.19459 -29.57065 -28.45337 -27.27012 -26.28358 -24.80545 -23.28312 -22.71097 -21.91424 -21.13114 -20.42795 -19.27204 -18.74062 -17.88374 -17.72691 -17.10803 -16.95642 -16.24480 -16.21313 -15.81022 -15.52663 -15.42723 -14.78077 -14.60571 -14.40057 -14.31090 -14.28017 -13.91736 -13.85140 -13.56941 -13.40599 -13.30094 -13.00793 -12.91094 -12.87448 -12.77265 -12.51797 -12.45391 -12.18472 -12.12039 -11.77690 -11.72263 -11.59668 -11.55935 -11.19917 -10.88756 -10.55140 -9.67746 -9.64361 -9.09797 -8.98350 -6.65786 -0.35916 0.70591 0.91120 1.21532 1.29816 1.38210 1.48411 1.66615 1.99319 2.04609 2.08204 2.55755 3.28756 3.47991 3.50887 3.88923 3.96450 4.04427 4.20423 4.23883 4.27289 4.38485 4.41520 4.42891 4.50460 4.52172 4.58013 4.65584 4.70494 4.74030 4.84023 4.84757 4.91100 5.01774 5.09834 5.11259 5.15574 5.18196 5.24139 5.36194 5.47230 5.53908 5.66290 5.73300 5.75140 5.97554 6.08118 6.25773 6.49158 6.59082 6.72026 7.17963 8.04201 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.005244 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.152037 B = 5338.596571 C = 7752.190924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.114 3.886 4 N -0.366 5.366 5 N -0.312 5.312 6 C 0.065 3.935 7 C -0.068 4.068 8 C -0.276 4.276 9 C 0.118 3.882 10 C 0.026 3.974 11 C -0.243 4.243 12 C -0.003 4.003 13 C -0.258 4.258 14 C 0.500 3.500 15 O -0.542 6.542 16 O -0.367 6.367 17 C 0.033 3.967 18 C 0.112 3.888 19 C -0.423 4.423 20 H 0.074 0.926 21 C 0.048 3.952 22 N -0.824 5.824 23 Si 0.953 3.047 24 H -0.243 1.243 25 H -0.273 1.273 26 H -0.254 1.254 27 C -0.211 4.211 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.138 0.862 44 H 0.300 0.700 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -6.244 12.717 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.148 5.148 5 N -0.135 5.135 6 C -0.100 4.100 7 C -0.126 4.126 8 C -0.305 4.305 9 C -0.009 4.009 10 C 0.024 3.976 11 C -0.262 4.262 12 C -0.021 4.021 13 C -0.261 4.261 14 C 0.350 3.650 15 O -0.435 6.435 16 O -0.284 6.284 17 C -0.061 4.061 18 C 0.108 3.892 19 C -0.451 4.451 20 H 0.092 0.908 21 C -0.170 4.170 22 N -0.449 5.449 23 Si 0.775 3.225 24 H -0.168 1.168 25 H -0.199 1.199 26 H -0.178 1.178 27 C -0.232 4.232 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.156 0.844 44 H 0.111 0.889 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.969 -6.019 13.378 17.194 hybrid contribution 0.953 0.695 -1.299 1.755 sum -8.016 -5.324 12.079 15.443 Atomic orbital electron populations 1.21707 0.92105 1.03344 1.03172 1.21926 0.98397 0.94419 1.02613 1.22322 0.72872 0.99957 1.05390 1.49079 1.06953 1.56063 1.02755 1.77126 0.98702 1.26226 1.11430 1.22719 0.95195 0.98934 0.93157 1.20299 0.89385 1.04051 0.98876 1.21598 0.95489 1.17029 0.96386 1.19930 0.92098 1.01396 0.87463 1.18012 0.94393 0.96770 0.88459 1.21092 0.95358 1.11403 0.98306 1.21161 0.98618 0.91356 0.90926 1.20089 0.95042 1.19362 0.91616 1.21290 0.79037 0.75592 0.89041 1.90823 1.62013 1.41846 1.48803 1.86522 1.33546 1.72997 1.35380 1.23409 1.00447 1.02270 0.79951 1.18546 0.89512 0.89464 0.91648 1.19798 1.15903 1.12271 0.97086 0.90798 1.26933 0.91292 0.96506 1.02229 1.69553 1.16291 1.22007 1.37020 0.85695 0.81439 0.77504 0.77821 1.16754 1.19907 1.17793 1.21088 0.99844 1.08885 0.93347 0.91528 0.91031 0.91209 0.92036 0.91508 0.87795 0.87571 0.89131 0.89286 0.90057 0.83547 0.83366 0.83372 0.92948 0.93074 0.84359 0.88852 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.14 -2.74 5.46 30.59 0.17 -2.58 16 3 C 0.11 2.77 5.57 86.38 0.48 3.25 16 4 N -0.37 -11.79 3.66 -335.56 -1.23 -13.02 16 5 N -0.31 -10.15 12.56 -47.61 -0.60 -10.75 16 6 C 0.06 1.99 7.19 42.98 0.31 2.30 16 7 C -0.07 -1.41 10.44 71.23 0.74 -0.67 16 8 C -0.28 -9.70 10.08 22.20 0.22 -9.48 16 9 C 0.12 4.31 6.70 40.63 0.27 4.58 16 10 C 0.03 1.03 5.80 -20.16 -0.12 0.91 16 11 C -0.24 -8.42 8.36 22.55 0.19 -8.23 16 12 C 0.00 -0.09 9.59 22.47 0.22 0.12 16 13 C -0.26 -11.82 6.07 -18.47 -0.11 -11.93 16 14 C 0.50 23.09 7.86 70.15 0.55 23.64 16 15 O -0.54 -29.18 13.62 19.67 0.27 -28.91 16 16 O -0.37 -13.40 9.84 -57.44 -0.56 -13.96 16 17 C 0.03 0.91 10.57 113.37 1.20 2.11 16 18 C 0.11 5.67 5.19 -19.91 -0.10 5.57 16 19 C -0.42 -23.95 8.25 23.42 0.19 -23.76 16 20 H 0.07 4.72 6.40 -2.91 -0.02 4.70 16 21 C 0.05 2.57 5.50 85.37 0.47 3.04 16 22 N -0.82 -44.94 13.92 21.88 0.30 -44.63 16 23 Si 0.95 42.13 24.48 68.60 1.68 43.81 16 24 H -0.24 -9.95 6.67 99.48 0.66 -9.28 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.25 -11.58 6.71 99.48 0.67 -10.91 16 27 C -0.21 -9.62 6.48 22.99 0.15 -9.47 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.43 6.93 -2.39 -0.02 1.41 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.11 2.56 5.82 -2.39 -0.01 2.55 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 38 H 0.15 5.01 7.74 -2.91 -0.02 4.99 16 39 H 0.15 4.12 3.34 -2.91 -0.01 4.11 16 40 H 0.15 4.40 7.62 -2.91 -0.02 4.37 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.30 14.55 8.29 -92.71 -0.77 13.78 16 45 H 0.11 5.13 4.19 -2.91 -0.01 5.12 16 Total: -1.00 -69.29 367.46 6.34 -62.95 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.94 Total: 26.46 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.54 Total: -21.95 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -1.52 Total: -68.40 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.30 Total: -42.88 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.68 Total: 43.81 kcal Total: -69.29 6.34 -62.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241765578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.183 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds