Wall clock time and date at job start Tue Mar 31 2020 14:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47036 * 2 1 4 4 C 1.53004 * 109.47061 * 240.00494 * 2 1 3 5 5 O 1.45195 * 109.47501 * 120.00321 * 2 1 3 6 6 C 1.34235 * 116.99994 * 59.99773 * 5 2 1 7 7 O 1.20829 * 119.99766 * 0.02562 * 6 5 2 8 8 C 1.50694 * 120.00390 * 180.02562 * 6 5 2 9 9 N 1.46496 * 109.47460 * 180.02562 * 8 6 5 10 10 C 1.34700 * 125.81480 * 125.00075 * 9 8 6 11 11 C 1.37861 * 107.38826 * 179.97438 * 10 9 8 12 12 C 1.47998 * 126.36378 * 180.02562 * 11 10 9 13 13 C 1.39950 * 119.87981 * 359.72671 * 12 11 10 14 14 C 1.36242 * 120.12018 * 179.71717 * 13 12 11 15 15 C 1.40935 * 119.87331 * 0.55322 * 14 13 12 16 16 C 1.41026 * 120.11741 * 179.69718 * 15 14 13 17 17 H 1.07994 * 120.00135 * 204.70721 * 16 15 14 18 18 C 1.39936 * 119.99492 * 24.71150 * 16 15 14 19 19 N 1.30845 * 120.00584 * 17.95562 * 18 16 15 20 20 Si 1.86803 * 119.99728 * 197.95951 * 18 16 15 21 21 H 1.48508 * 109.47153 * 59.99952 * 20 18 16 22 22 H 1.48504 * 109.47427 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47275 * 300.00158 * 20 18 16 24 24 C 1.40944 * 119.77027 * 359.71839 * 15 14 13 25 25 C 1.36234 * 119.87710 * 0.02562 * 24 15 14 26 26 C 1.41092 * 107.26870 * 359.97438 * 11 10 9 27 27 N 1.30551 * 108.11709 * 359.75533 * 26 11 10 28 28 H 1.09000 * 109.46936 * 299.99685 * 1 2 3 29 29 H 1.09002 * 109.47199 * 59.99587 * 1 2 3 30 30 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46689 * 179.97438 * 3 2 1 32 32 H 1.08989 * 109.47166 * 300.00156 * 3 2 1 33 33 H 1.09000 * 109.47001 * 60.00355 * 3 2 1 34 34 H 1.08999 * 109.46542 * 299.99992 * 4 2 1 35 35 H 1.09002 * 109.47180 * 59.99907 * 4 2 1 36 36 H 1.08995 * 109.47294 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46789 * 300.00270 * 8 6 5 38 38 H 1.09002 * 109.46954 * 59.99264 * 8 6 5 39 39 H 1.07994 * 126.30447 * 359.93746 * 10 9 8 40 40 H 1.08002 * 119.94713 * 359.97438 * 13 12 11 41 41 H 1.07996 * 120.06311 * 180.25397 * 14 13 12 42 42 H 0.96997 * 119.99907 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.06247 * 179.97438 * 24 15 14 44 44 H 1.07992 * 119.94260 * 180.02562 * 25 24 15 45 45 H 1.07996 * 125.93732 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9567 -2.5028 0.5076 8 6 2.1175 -2.7436 2.5439 9 7 1.5943 -4.1103 2.4771 10 6 2.3274 -5.2387 2.5362 11 6 1.4554 -6.3021 2.4392 12 6 1.8162 -7.7373 2.4591 13 6 3.1576 -8.1175 2.5806 14 6 3.4946 -9.4373 2.6052 15 6 2.4907 -10.4203 2.4962 16 6 2.8344 -11.7879 2.5147 17 1 2.1842 -12.5145 2.0503 18 6 4.0180 -12.2035 3.1348 19 7 4.6226 -11.4147 3.9859 20 14 4.7350 -13.8844 2.7475 21 1 5.0409 -13.9698 1.2968 22 1 5.9825 -14.0824 3.5284 23 1 3.7519 -14.9371 3.1088 24 6 1.1419 -10.0319 2.3683 25 6 0.8153 -8.7094 2.3500 26 6 0.1551 -5.7679 2.3187 27 7 0.2469 -4.4660 2.3478 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 3.2070 -2.7724 2.5601 38 1 1.7534 -2.2585 3.4496 39 1 3.4007 -5.2992 2.6398 40 1 3.9267 -7.3633 2.6593 41 1 4.5297 -9.7296 2.7032 42 1 5.4428 -11.7030 4.4160 43 1 0.3687 -10.7813 2.2840 44 1 -0.2179 -8.4106 2.2524 45 1 -0.7577 -6.3372 2.2238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242787343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:50 Heat of formation + Delta-G solvation = 8.058962 kcal Electronic energy + Delta-G solvation = -26611.038109 eV Core-core repulsion = 22788.127279 eV Total energy + Delta-G solvation = -3822.910830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.19800 -40.41855 -37.50028 -37.14737 -34.45178 -33.95824 -33.04254 -30.84732 -29.47956 -28.88976 -27.73788 -27.69034 -27.49881 -24.80929 -22.91921 -21.54003 -21.35476 -20.11309 -19.49290 -19.36783 -17.49964 -17.34656 -17.04941 -16.43002 -16.39049 -15.24630 -14.95198 -14.64929 -14.34639 -14.30290 -13.88998 -13.70138 -13.53816 -13.24068 -12.95503 -12.81402 -12.56537 -12.40472 -12.26571 -12.24673 -12.21625 -11.85502 -11.72036 -11.61851 -11.52739 -11.21433 -11.12700 -10.82433 -10.65738 -10.63321 -10.27215 -10.17458 -9.61775 -9.36588 -9.25351 -9.04621 -8.44790 -7.52813 -6.90538 -6.74034 -4.31147 1.87353 2.01585 2.31864 2.65876 2.84930 3.03088 3.04025 3.08614 3.14744 3.78279 3.89590 4.30554 4.38819 4.41949 4.53430 4.58094 4.69929 4.86859 5.14535 5.21089 5.21658 5.36132 5.36973 5.38801 5.49942 5.52956 5.66571 5.75206 5.96411 6.00320 6.02572 6.12728 6.26796 6.30419 6.32500 6.44573 6.92904 7.03050 7.06027 7.25682 7.30502 7.38009 7.61962 7.65051 7.92422 8.03618 8.06626 8.22154 8.26903 8.60330 8.84840 8.96130 10.11834 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.002052 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.261274 B =13641.400731 C =13956.973736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.119 3.881 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.354 6.354 6 C 0.446 3.554 7 O -0.468 6.468 8 C 0.152 3.848 9 N -0.377 5.377 10 C 0.013 3.987 11 C -0.121 4.121 12 C -0.152 4.152 13 C -0.086 4.086 14 C -0.167 4.167 15 C 0.112 3.888 16 C -0.455 4.455 17 H 0.079 0.921 18 C 0.075 3.925 19 N -0.787 5.787 20 Si 0.909 3.091 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.225 4.225 25 C -0.073 4.073 26 C 0.047 3.953 27 N -0.284 5.284 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.132 0.868 38 H 0.120 0.880 39 H 0.170 0.830 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.282 0.718 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.908 20.709 -4.032 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.083 3.917 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.272 6.272 6 C 0.285 3.715 7 O -0.352 6.352 8 C 0.028 3.972 9 N -0.162 5.162 10 C -0.128 4.128 11 C -0.131 4.131 12 C -0.154 4.154 13 C -0.105 4.105 14 C -0.187 4.187 15 C 0.109 3.891 16 C -0.484 4.484 17 H 0.097 0.903 18 C -0.144 4.144 19 N -0.412 5.412 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.245 4.245 25 C -0.092 4.092 26 C -0.141 4.141 27 N -0.104 5.104 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.187 0.813 40 H 0.104 0.896 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.497 21.810 -4.189 22.259 hybrid contribution 0.841 -1.466 -0.139 1.696 sum -0.656 20.344 -4.329 20.810 Atomic orbital electron populations 1.22488 0.93885 1.05022 1.02643 1.22189 0.94514 0.92127 0.82869 1.21851 1.02212 0.92542 1.03071 1.22491 1.01667 1.03296 0.96613 1.86507 1.70123 1.25067 1.45529 1.23661 0.78768 0.81032 0.87989 1.90674 1.33068 1.69507 1.41912 1.20817 1.00944 0.79830 0.95589 1.47500 1.05237 1.03626 1.59883 1.22609 0.97891 0.84934 1.07361 1.19401 0.91293 0.93582 1.08846 1.17420 0.93419 0.87946 1.16658 1.20381 0.93766 0.95727 1.00594 1.20960 0.99662 0.91366 1.06681 1.17673 0.90632 0.93393 0.87356 1.19570 1.04413 0.93394 1.31005 0.90328 1.25954 0.96170 0.99455 0.92806 1.69833 1.15826 1.37268 1.18233 0.86357 0.78668 0.81869 0.79802 1.18755 1.20311 1.18936 1.20661 0.95757 0.94431 1.13657 1.20247 0.96324 0.93007 0.99584 1.23938 0.98586 0.90951 1.00581 1.77045 0.94699 1.15265 1.23411 0.91984 0.91095 0.89599 0.91441 0.90333 0.91447 0.89763 0.91017 0.91966 0.85017 0.86239 0.81265 0.89643 0.86518 0.90705 0.88921 0.89282 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.12 1.09 1.13 -90.61 -0.10 0.99 16 3 C -0.14 -0.89 8.85 37.16 0.33 -0.56 16 4 C -0.18 -1.74 8.37 37.16 0.31 -1.42 16 5 O -0.35 -3.72 9.89 -39.27 -0.39 -4.10 16 6 C 0.45 5.48 7.30 36.00 0.26 5.74 16 7 O -0.47 -7.31 11.21 -18.75 -0.21 -7.52 16 8 C 0.15 1.62 7.09 -5.20 -0.04 1.58 16 9 N -0.38 -5.81 3.38 -61.93 -0.21 -6.02 16 10 C 0.01 0.22 10.88 -16.43 -0.18 0.04 16 11 C -0.12 -2.34 6.08 -104.95 -0.64 -2.98 16 12 C -0.15 -3.36 5.90 -104.61 -0.62 -3.98 16 13 C -0.09 -1.97 9.50 -39.66 -0.38 -2.34 16 14 C -0.17 -4.26 8.63 -39.28 -0.34 -4.59 16 15 C 0.11 2.94 5.57 -106.80 -0.60 2.35 16 16 C -0.45 -11.83 9.03 -37.89 -0.34 -12.17 16 17 H 0.08 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.07 1.83 5.13 -17.34 -0.09 1.75 16 19 N -0.79 -19.85 10.96 55.55 0.61 -19.24 16 20 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.23 -5.47 9.73 -39.28 -0.38 -5.86 16 25 C -0.07 -1.63 9.51 -39.66 -0.38 -2.01 16 26 C 0.05 0.85 11.42 -17.01 -0.19 0.66 16 27 N -0.28 -5.09 11.58 30.83 0.36 -4.74 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.06 5.89 -51.93 -0.31 0.76 16 31 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.38 8.14 -51.94 -0.42 -0.04 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 1.04 5.89 -51.93 -0.31 0.73 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.13 0.94 8.06 -51.93 -0.42 0.52 16 38 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.17 2.34 7.30 -52.49 -0.38 1.96 16 40 H 0.09 1.72 7.01 -52.49 -0.37 1.35 16 41 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 42 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 43 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 44 H 0.09 1.74 7.03 -52.49 -0.37 1.37 16 45 H 0.18 2.86 7.34 -52.49 -0.39 2.47 16 LS Contribution 374.51 15.07 5.64 5.64 Total: -1.00 -31.02 374.51 -8.50 -39.52 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.21 Total: 7.50 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -3.05 Total: -24.23 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: 0.76 Total: -30.00 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.60 Total: -11.63 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.02 -8.50 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242787343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.579 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds