Wall clock time and date at job start Tue Mar 31 2020 14:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.47036 * 2 1 4 4 C 1.53004 * 109.47061 * 240.00494 * 2 1 3 5 5 O 1.45195 * 109.47501 * 120.00321 * 2 1 3 6 6 C 1.34235 * 116.99994 * 59.99773 * 5 2 1 7 7 O 1.20829 * 119.99766 * 0.02562 * 6 5 2 8 8 C 1.50694 * 120.00390 * 180.02562 * 6 5 2 9 9 N 1.46496 * 109.47460 * 180.02562 * 8 6 5 10 10 C 1.34700 * 125.81480 * 125.00075 * 9 8 6 11 11 C 1.37861 * 107.38826 * 179.97438 * 10 9 8 12 12 C 1.47998 * 126.36378 * 180.02562 * 11 10 9 13 13 C 1.39950 * 119.87981 * 359.72671 * 12 11 10 14 14 C 1.36242 * 120.12018 * 179.71717 * 13 12 11 15 15 C 1.40935 * 119.87331 * 0.55322 * 14 13 12 16 16 C 1.41026 * 120.11741 * 179.69718 * 15 14 13 17 17 H 1.07994 * 120.00135 * 204.70721 * 16 15 14 18 18 C 1.39936 * 119.99492 * 24.71150 * 16 15 14 19 19 N 1.30845 * 120.00584 * 17.95562 * 18 16 15 20 20 Si 1.86803 * 119.99728 * 197.95951 * 18 16 15 21 21 H 1.48508 * 109.47153 * 59.99952 * 20 18 16 22 22 H 1.48504 * 109.47427 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47275 * 300.00158 * 20 18 16 24 24 C 1.40944 * 119.77027 * 359.71839 * 15 14 13 25 25 C 1.36234 * 119.87710 * 0.02562 * 24 15 14 26 26 C 1.41092 * 107.26870 * 359.97438 * 11 10 9 27 27 N 1.30551 * 108.11709 * 359.75533 * 26 11 10 28 28 H 1.09000 * 109.46936 * 299.99685 * 1 2 3 29 29 H 1.09002 * 109.47199 * 59.99587 * 1 2 3 30 30 H 1.08997 * 109.46985 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46689 * 179.97438 * 3 2 1 32 32 H 1.08989 * 109.47166 * 300.00156 * 3 2 1 33 33 H 1.09000 * 109.47001 * 60.00355 * 3 2 1 34 34 H 1.08999 * 109.46542 * 299.99992 * 4 2 1 35 35 H 1.09002 * 109.47180 * 59.99907 * 4 2 1 36 36 H 1.08995 * 109.47294 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46789 * 300.00270 * 8 6 5 38 38 H 1.09002 * 109.46954 * 59.99264 * 8 6 5 39 39 H 1.07994 * 126.30447 * 359.93746 * 10 9 8 40 40 H 1.08002 * 119.94713 * 359.97438 * 13 12 11 41 41 H 1.07996 * 120.06311 * 180.25397 * 14 13 12 42 42 H 0.96997 * 119.99907 * 179.97438 * 19 18 16 43 43 H 1.07996 * 120.06247 * 179.97438 * 24 15 14 44 44 H 1.07992 * 119.94260 * 180.02562 * 25 24 15 45 45 H 1.07996 * 125.93732 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9567 -2.5028 0.5076 8 6 2.1175 -2.7436 2.5439 9 7 1.5943 -4.1103 2.4771 10 6 2.3274 -5.2387 2.5362 11 6 1.4554 -6.3021 2.4392 12 6 1.8162 -7.7373 2.4591 13 6 3.1576 -8.1175 2.5806 14 6 3.4946 -9.4373 2.6052 15 6 2.4907 -10.4203 2.4962 16 6 2.8344 -11.7879 2.5147 17 1 2.1842 -12.5145 2.0503 18 6 4.0180 -12.2035 3.1348 19 7 4.6226 -11.4147 3.9859 20 14 4.7350 -13.8844 2.7475 21 1 5.0409 -13.9698 1.2968 22 1 5.9825 -14.0824 3.5284 23 1 3.7519 -14.9371 3.1088 24 6 1.1419 -10.0319 2.3683 25 6 0.8153 -8.7094 2.3500 26 6 0.1551 -5.7679 2.3187 27 7 0.2469 -4.4660 2.3478 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1300 -0.7216 -1.2491 37 1 3.2070 -2.7724 2.5601 38 1 1.7534 -2.2585 3.4496 39 1 3.4007 -5.2992 2.6398 40 1 3.9267 -7.3633 2.6593 41 1 4.5297 -9.7296 2.7032 42 1 5.4428 -11.7030 4.4160 43 1 0.3687 -10.7813 2.2840 44 1 -0.2179 -8.4106 2.2524 45 1 -0.7577 -6.3372 2.2238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242787343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:49 Heat of formation + Delta-G solvation = -7.242972 kcal Electronic energy + Delta-G solvation = -26611.701651 eV Core-core repulsion = 22788.127279 eV Total energy + Delta-G solvation = -3823.574372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.26042 -41.57408 -39.23374 -38.11610 -35.71840 -35.22371 -34.25421 -32.49712 -31.26790 -30.32226 -28.87531 -28.43216 -28.31789 -26.48809 -23.98885 -23.19216 -22.85541 -21.28760 -20.93388 -20.54354 -19.19829 -18.39262 -18.26557 -17.39975 -17.30778 -16.96702 -15.99045 -15.84782 -15.78752 -15.37386 -15.25782 -15.05497 -14.64669 -14.49629 -14.27357 -13.97338 -13.83401 -13.46463 -13.40175 -13.39423 -13.07034 -12.98134 -12.96418 -12.89422 -12.77338 -12.51848 -12.41924 -12.33464 -12.22409 -11.75909 -11.44185 -11.30398 -11.18348 -11.15011 -11.02097 -10.31702 -10.08037 -9.37244 -8.67990 -8.45426 -6.20933 0.57338 1.00168 1.10471 1.26621 1.33900 1.39982 1.48374 1.52381 1.84223 2.16554 2.23793 2.90325 3.46604 3.64086 3.72212 3.75607 3.87780 3.91591 4.00073 4.13085 4.13795 4.51403 4.52861 4.54999 4.57634 4.64403 4.71696 4.74179 4.78876 4.85367 4.85804 4.91380 5.10105 5.11675 5.20465 5.21394 5.26464 5.43084 5.47294 5.51670 5.65456 5.78564 5.98839 6.16080 6.18334 6.31983 6.42483 6.72618 6.73677 6.80451 6.96983 7.09536 8.34408 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.002052 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.261274 B =13641.400731 C =13956.973736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.349 6.349 6 C 0.447 3.553 7 O -0.507 6.507 8 C 0.141 3.859 9 N -0.368 5.368 10 C 0.044 3.956 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.093 4.093 14 C -0.188 4.188 15 C 0.076 3.924 16 C -0.496 4.496 17 H 0.074 0.926 18 C 0.035 3.965 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.261 1.261 24 C -0.241 4.241 25 C -0.084 4.084 26 C 0.041 3.959 27 N -0.304 5.304 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.176 0.824 38 H 0.149 0.851 39 H 0.203 0.797 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.289 0.711 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 23.475 -3.989 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.074 3.926 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.266 6.266 6 C 0.288 3.712 7 O -0.394 6.394 8 C 0.019 3.981 9 N -0.152 5.152 10 C -0.100 4.100 11 C -0.179 4.179 12 C -0.138 4.138 13 C -0.112 4.112 14 C -0.207 4.207 15 C 0.073 3.927 16 C -0.525 4.525 17 H 0.092 0.908 18 C -0.180 4.180 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.185 1.185 24 C -0.260 4.260 25 C -0.102 4.102 26 C -0.145 4.145 27 N -0.125 5.125 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.193 0.807 38 H 0.167 0.833 39 H 0.219 0.781 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.133 0.867 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.488 24.634 -4.139 24.984 hybrid contribution 0.447 -1.936 -0.183 1.996 sum -0.041 22.698 -4.322 23.106 Atomic orbital electron populations 1.22446 0.94323 1.03149 1.03791 1.22480 0.94347 0.93530 0.82201 1.21867 1.02603 0.90353 1.04292 1.22452 1.01969 1.01624 0.97696 1.86509 1.69754 1.24187 1.46124 1.23938 0.77922 0.81476 0.87825 1.90693 1.34895 1.70364 1.43428 1.21421 1.03422 0.77339 0.95909 1.47850 1.04390 1.05307 1.57691 1.23081 0.99015 0.84551 1.03402 1.19333 0.92696 0.92766 1.13065 1.17713 0.92927 0.89650 1.13468 1.20658 0.95036 0.95374 1.00087 1.20953 0.98919 0.92545 1.08289 1.18026 0.91696 0.94105 0.88830 1.19769 1.06114 0.93597 1.33040 0.90776 1.26751 0.95918 1.03338 0.92027 1.69877 1.16441 1.39229 1.19031 0.85271 0.78099 0.76939 0.79505 1.18608 1.19049 1.18491 1.20848 0.95365 0.95618 1.14175 1.20559 0.97983 0.92410 0.99285 1.24135 0.98831 0.91227 1.00348 1.77029 0.96371 1.14995 1.24092 0.91491 0.89339 0.92859 0.90818 0.88511 0.90876 0.92968 0.89327 0.91352 0.80709 0.83315 0.78077 0.86801 0.87944 0.90046 0.88587 0.86729 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 2 C 0.11 1.79 1.13 -10.79 -0.01 1.77 16 3 C -0.13 -1.28 8.85 71.98 0.64 -0.64 16 4 C -0.18 -3.14 8.37 71.98 0.60 -2.53 16 5 O -0.35 -6.43 9.89 -51.46 -0.51 -6.94 16 6 C 0.45 10.02 7.30 71.23 0.52 10.54 16 7 O -0.51 -15.51 11.21 21.96 0.25 -15.27 16 8 C 0.14 2.46 7.09 85.63 0.61 3.06 16 9 N -0.37 -10.28 3.38 -349.86 -1.18 -11.47 16 10 C 0.04 1.30 10.88 84.16 0.92 2.22 16 11 C -0.17 -6.24 6.08 -20.08 -0.12 -6.36 16 12 C -0.14 -5.92 5.90 -19.86 -0.12 -6.03 16 13 C -0.09 -4.24 9.50 22.22 0.21 -4.03 16 14 C -0.19 -9.84 8.63 22.47 0.19 -9.65 16 15 C 0.08 4.15 5.57 -21.27 -0.12 4.03 16 16 C -0.50 -27.02 9.03 23.37 0.21 -26.81 16 17 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 18 C 0.03 1.77 5.13 85.25 0.44 2.20 16 19 N -0.82 -42.64 10.96 21.83 0.24 -42.40 16 20 Si 0.98 38.15 29.60 68.60 2.03 40.18 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 22 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 24 C -0.24 -12.09 9.73 22.47 0.22 -11.87 16 25 C -0.08 -3.79 9.51 22.22 0.21 -3.58 16 26 C 0.04 1.45 11.42 85.58 0.98 2.42 16 27 N -0.30 -10.43 11.58 -56.36 -0.65 -11.08 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.32 5.89 -2.39 -0.01 1.30 16 31 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 1.28 5.89 -2.39 -0.01 1.26 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.18 1.55 8.06 -2.39 -0.02 1.53 16 38 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.20 4.63 7.30 -2.91 -0.02 4.61 16 40 H 0.11 4.38 7.01 -2.91 -0.02 4.36 16 41 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 42 H 0.29 13.52 8.30 -92.71 -0.77 12.76 16 43 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 44 H 0.11 4.45 7.03 -2.91 -0.02 4.43 16 45 H 0.19 5.92 7.34 -2.91 -0.02 5.90 16 Total: -1.00 -71.17 374.51 7.15 -64.02 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 1.00 Total: 30.75 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 5.98 Total: -47.80 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -1.60 Total: -64.95 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.26 Total: -22.21 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -71.17 7.15 -64.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242787343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.777 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds