Wall clock time and date at job start Tue Mar 31 2020 14:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47320 * 2 1 4 4 C 1.53002 * 109.47325 * 239.99850 * 2 1 3 5 5 O 1.45200 * 109.47311 * 119.99913 * 2 1 3 6 6 C 1.34234 * 117.00120 * 59.99870 * 5 2 1 7 7 O 1.20830 * 119.99453 * 0.02562 * 6 5 2 8 8 C 1.50696 * 120.00238 * 180.02562 * 6 5 2 9 9 N 1.46496 * 109.47010 * 179.97438 * 8 6 5 10 10 C 1.34826 * 125.89262 * 125.00135 * 9 8 6 11 11 C 1.36428 * 107.61251 * 180.02562 * 10 9 8 12 12 C 1.48490 * 126.22551 * 180.02562 * 11 10 9 13 13 C 1.39704 * 119.99377 * 359.71862 * 12 11 10 14 14 C 1.38394 * 120.38242 * 179.76561 * 13 12 11 15 15 C 1.37719 * 120.37171 * 0.51622 * 14 13 12 16 16 C 1.40755 * 119.98197 * 359.74653 * 15 14 13 17 17 C 1.41423 * 120.18881 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99673 * 204.48181 * 17 16 15 19 19 C 1.39928 * 119.99848 * 24.47232 * 17 16 15 20 20 N 1.30828 * 120.00230 * 17.90846 * 19 17 16 21 21 Si 1.86807 * 119.99663 * 197.90319 * 19 17 16 22 22 H 1.48499 * 109.47149 * 60.00208 * 21 19 17 23 23 H 1.48497 * 109.47024 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47150 * 300.00252 * 21 19 17 25 25 C 1.38688 * 120.00007 * 180.02562 * 12 11 10 26 26 C 1.40845 * 107.55580 * 359.97438 * 11 10 9 27 27 N 1.30671 * 108.09698 * 359.71704 * 26 11 10 28 28 H 1.09004 * 109.47038 * 299.99973 * 1 2 3 29 29 H 1.08996 * 109.47056 * 59.99750 * 1 2 3 30 30 H 1.08994 * 109.47176 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.46912 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46577 * 299.99955 * 3 2 1 33 33 H 1.09000 * 109.46560 * 60.00110 * 3 2 1 34 34 H 1.08994 * 109.47074 * 300.00162 * 4 2 1 35 35 H 1.09005 * 109.46922 * 60.00059 * 4 2 1 36 36 H 1.08992 * 109.47167 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.47296 * 300.00123 * 8 6 5 38 38 H 1.08997 * 109.47041 * 60.00213 * 8 6 5 39 39 H 1.07998 * 126.19451 * 0.02562 * 10 9 8 40 40 H 1.07999 * 119.80491 * 0.02780 * 13 12 11 41 41 H 1.07996 * 119.81361 * 180.24184 * 14 13 12 42 42 H 1.08005 * 120.00553 * 179.72445 * 15 14 13 43 43 H 0.97000 * 120.00062 * 179.97438 * 20 19 17 44 44 H 1.08004 * 120.17830 * 359.97438 * 25 12 11 45 45 H 1.08003 * 125.95105 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6534 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1174 -2.7434 2.5442 9 7 1.5932 -4.1097 2.4780 10 6 2.3247 -5.2408 2.5371 11 6 1.4638 -6.2947 2.4409 12 6 1.8318 -7.7331 2.4614 13 6 3.1717 -8.1095 2.5832 14 6 3.5233 -9.4478 2.6080 15 6 2.5572 -10.4236 2.5024 16 6 1.2031 -10.0618 2.3736 17 6 0.2074 -11.0603 2.2653 18 1 -0.7337 -10.8346 1.7860 19 6 0.4418 -12.3406 2.7790 20 7 1.3996 -12.5310 3.6496 21 14 -0.6131 -13.7781 2.2216 22 1 -0.4785 -13.9506 0.7528 23 1 -0.1659 -15.0161 2.9090 24 1 -2.0339 -13.5101 2.5604 25 6 0.8461 -8.7027 2.3533 26 6 0.1622 -5.7704 2.3198 27 7 0.2454 -4.4666 2.3490 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 3.2068 -2.7722 2.5605 38 1 1.7532 -2.2584 3.4498 39 1 3.3979 -5.3014 2.6416 40 1 3.9370 -7.3517 2.6626 41 1 4.5615 -9.7285 2.7064 42 1 2.8387 -11.4663 2.5180 43 1 1.5618 -13.4185 4.0059 44 1 -0.1902 -8.4148 2.2545 45 1 -0.7468 -6.3457 2.2240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242788266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:55 Heat of formation + Delta-G solvation = -6.907026 kcal Electronic energy + Delta-G solvation = -26670.612654 eV Core-core repulsion = 22847.052850 eV Total energy + Delta-G solvation = -3823.559804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.36298 -41.64596 -39.13419 -38.12506 -35.65429 -35.23274 -34.33701 -32.41922 -31.66311 -30.13797 -28.43398 -28.31751 -28.11950 -27.08594 -24.00758 -23.36595 -22.73536 -21.28268 -21.13261 -20.56038 -19.07612 -18.39964 -17.99012 -17.37151 -17.31775 -16.99156 -16.32407 -15.96263 -15.66803 -15.35097 -15.28833 -15.04880 -14.66993 -14.51956 -14.31447 -13.99487 -13.80733 -13.54699 -13.39201 -13.37869 -13.07233 -12.98231 -12.89732 -12.89356 -12.73845 -12.50500 -12.43986 -12.26244 -12.12562 -11.85790 -11.44317 -11.38229 -11.18810 -11.12273 -11.00814 -10.37820 -10.21013 -9.31712 -8.60177 -8.39704 -6.29001 0.55564 1.01246 1.08073 1.10267 1.30221 1.38999 1.49879 1.55106 1.81138 2.18597 2.24592 2.87564 3.44312 3.60700 3.71846 3.75203 3.88435 3.91482 3.94948 4.10977 4.13163 4.39375 4.52217 4.54879 4.56829 4.71720 4.72764 4.77820 4.79198 4.85435 4.86175 4.87901 5.10363 5.13440 5.17542 5.21383 5.26525 5.34280 5.47480 5.56589 5.59675 5.80890 5.98822 6.11256 6.15768 6.26881 6.46454 6.68353 6.74972 6.77397 7.01314 7.10680 8.38740 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.002125 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.751431 B =13175.613247 C =13603.263494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.111 3.889 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.347 6.347 6 C 0.446 3.554 7 O -0.508 6.508 8 C 0.141 3.859 9 N -0.370 5.370 10 C 0.079 3.921 11 C -0.199 4.199 12 C 0.015 3.985 13 C -0.227 4.227 14 C -0.107 4.107 15 C -0.196 4.196 16 C 0.080 3.920 17 C -0.505 4.505 18 H 0.071 0.929 19 C 0.035 3.965 20 N -0.827 5.827 21 Si 0.979 3.021 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.234 4.234 26 C 0.049 3.951 27 N -0.303 5.303 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.182 0.818 38 H 0.151 0.849 39 H 0.216 0.784 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.287 0.713 44 H 0.092 0.908 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 25.008 -3.474 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.075 3.925 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.265 6.265 6 C 0.287 3.713 7 O -0.395 6.395 8 C 0.019 3.981 9 N -0.153 5.153 10 C -0.066 4.066 11 C -0.209 4.209 12 C 0.014 3.986 13 C -0.247 4.247 14 C -0.125 4.125 15 C -0.216 4.216 16 C 0.078 3.922 17 C -0.534 4.534 18 H 0.089 0.911 19 C -0.179 4.179 20 N -0.453 5.453 21 Si 0.800 3.200 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.254 4.254 26 C -0.138 4.138 27 N -0.122 5.122 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.199 0.801 38 H 0.168 0.832 39 H 0.232 0.768 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.674 25.993 -3.638 26.659 hybrid contribution -0.476 -1.984 -0.285 2.061 sum 4.198 24.009 -3.923 24.687 Atomic orbital electron populations 1.22451 0.94466 1.03101 1.03768 1.22471 0.94232 0.93560 0.82227 1.21865 1.02659 0.90314 1.04264 1.22451 1.02049 1.01595 0.97646 1.86507 1.69713 1.24152 1.46089 1.23958 0.77929 0.81520 0.87850 1.90707 1.34908 1.70398 1.43510 1.21486 1.03687 0.77016 0.95897 1.48058 1.04349 1.05602 1.57289 1.22914 0.99439 0.84097 1.00143 1.19186 0.93070 0.93179 1.15513 1.17906 0.93373 0.89312 0.98031 1.20699 0.94531 0.95325 1.14106 1.20915 0.98171 0.93470 0.99918 1.21320 0.93018 0.98478 1.08790 1.17876 0.93249 0.92294 0.88813 1.19752 1.01983 0.96081 1.35628 0.91096 1.26702 0.96571 1.02344 0.92271 1.69881 1.29225 1.25087 1.21128 0.85306 0.78888 0.76321 0.79477 1.18668 1.19075 1.18557 1.21091 0.97323 0.92616 1.14373 1.24100 0.98964 0.91378 0.99327 1.77198 0.96546 1.14430 1.24069 0.91512 0.89394 0.92934 0.90695 0.88580 0.90892 0.92988 0.89423 0.91184 0.80056 0.83168 0.76774 0.85469 0.86768 0.88339 0.90281 0.88988 0.80222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 2 C 0.11 1.75 1.13 -10.79 -0.01 1.73 16 3 C -0.13 -1.21 8.85 71.98 0.64 -0.57 16 4 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 5 O -0.35 -6.11 9.89 -51.46 -0.51 -6.62 16 6 C 0.45 9.59 7.30 71.23 0.52 10.11 16 7 O -0.51 -15.36 11.22 21.95 0.25 -15.11 16 8 C 0.14 2.22 7.09 85.63 0.61 2.83 16 9 N -0.37 -9.89 3.39 -350.99 -1.19 -11.08 16 10 C 0.08 2.20 10.83 83.81 0.91 3.11 16 11 C -0.20 -7.43 6.04 -20.33 -0.12 -7.55 16 12 C 0.02 0.67 5.87 -20.08 -0.12 0.55 16 13 C -0.23 -9.51 9.57 22.66 0.22 -9.29 16 14 C -0.11 -4.90 10.01 22.18 0.22 -4.68 16 15 C -0.20 -10.59 8.69 22.76 0.20 -10.39 16 16 C 0.08 4.48 5.57 -21.32 -0.12 4.36 16 17 C -0.50 -28.39 9.05 23.46 0.21 -28.18 16 18 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 19 C 0.04 1.85 5.14 85.25 0.44 2.29 16 20 N -0.83 -44.55 10.96 21.82 0.24 -44.31 16 21 Si 0.98 39.71 29.60 68.60 2.03 41.74 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 25 C -0.23 -11.99 9.32 22.94 0.21 -11.78 16 26 C 0.05 1.84 11.41 85.50 0.98 2.82 16 27 N -0.30 -10.54 11.62 -56.46 -0.66 -11.19 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.31 5.89 -2.39 -0.01 1.29 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 1.25 5.89 -2.39 -0.01 1.23 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.18 1.14 8.07 -2.39 -0.02 1.12 16 38 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.22 4.07 7.27 -2.91 -0.02 4.04 16 40 H 0.13 4.16 6.99 -2.91 -0.02 4.14 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.10 5.55 6.15 -2.91 -0.02 5.53 16 43 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 44 H 0.09 4.55 7.03 -2.91 -0.02 4.53 16 45 H 0.18 6.50 7.34 -2.91 -0.02 6.48 16 Total: -1.00 -74.52 374.61 7.15 -67.37 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 1.00 Total: 28.86 kcal Atomic # 6 Polarization: -55.64 SS G_CDS: 5.98 Total: -49.66 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.61 Total: -66.59 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.26 Total: -21.73 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -74.52 7.15 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242788266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.463 kcal (2) G-P(sol) polarization free energy of solvation -74.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds