Wall clock time and date at job start Tue Mar 31 2020 14:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46726 * 180.02562 * 4 3 2 6 6 C 1.35892 * 116.99638 * 180.02562 * 5 4 3 7 7 C 1.38555 * 120.09520 * 359.97438 * 6 5 4 8 8 C 1.38183 * 120.09100 * 180.02562 * 7 6 5 9 9 C 1.38576 * 120.28036 * 359.97438 * 8 7 6 10 10 F 1.35099 * 119.91068 * 179.97438 * 9 8 7 11 11 C 1.38199 * 120.18405 * 0.02562 * 9 8 7 12 12 C 1.39311 * 119.90764 * 359.72774 * 11 9 8 13 13 C 1.48325 * 120.14079 * 180.30069 * 12 11 9 14 14 C 1.39362 * 120.12541 * 129.95599 * 13 12 11 15 15 C 1.38017 * 119.87124 * 179.79021 * 14 13 12 16 16 C 1.38323 * 120.12428 * 0.48306 * 15 14 13 17 17 C 1.50700 * 119.87492 * 179.76973 * 16 15 14 18 18 C 1.50707 * 109.47013 * 269.97355 * 17 16 15 19 19 H 1.08000 * 119.99670 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00021 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99942 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47273 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47192 * 120.00540 * 22 20 18 25 25 H 1.48505 * 109.47042 * 240.00486 * 22 20 18 26 26 C 1.38322 * 120.25158 * 359.74069 * 16 15 14 27 27 C 1.38013 * 120.12283 * 0.03027 * 26 16 15 28 28 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 29 29 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 31 31 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 33 33 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 34 34 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 35 35 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 36 36 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 37 37 H 1.08002 * 119.95654 * 0.03614 * 7 6 5 38 38 H 1.08001 * 119.86490 * 180.02562 * 8 7 6 39 39 H 1.07996 * 120.04912 * 180.02562 * 11 9 8 40 40 H 1.08000 * 120.06748 * 0.02562 * 14 13 12 41 41 H 1.08003 * 119.93440 * 180.20469 * 15 14 13 42 42 H 1.09001 * 109.47278 * 29.97510 * 17 16 15 43 43 H 1.08995 * 109.47409 * 149.98052 * 17 16 15 44 44 H 0.96998 * 120.00511 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.93771 * 180.02562 * 26 16 15 46 46 H 1.07997 * 120.06459 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0462 2.7899 0.0000 6 6 5.3934 2.9679 -0.0010 7 6 6.2393 1.8705 -0.0020 8 6 7.6092 2.0517 -0.0025 9 6 8.1450 3.3297 -0.0026 10 9 9.4854 3.4981 -0.0025 11 6 7.3120 4.4324 -0.0016 12 6 5.9297 4.2587 -0.0063 13 6 5.0309 5.4386 -0.0120 14 6 3.9946 5.5239 -0.9399 15 6 3.1587 6.6222 -0.9377 16 6 3.3540 7.6415 -0.0233 17 6 2.4411 8.8405 -0.0293 18 6 3.0038 9.8957 -0.9464 19 1 3.9296 9.7158 -1.4727 20 6 2.3361 11.0902 -1.1145 21 7 1.2084 11.3090 -0.4742 22 14 3.0331 12.3978 -2.2519 23 1 4.3021 11.9093 -2.8488 24 1 2.0565 12.6853 -3.3329 25 1 3.2948 13.6382 -1.4784 26 6 4.3838 7.5642 0.8970 27 6 5.2230 6.4685 0.9070 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9285 0.8891 36 1 3.9329 0.9289 -0.8909 37 1 5.8274 0.8721 -0.0026 38 1 8.2651 1.1937 -0.0037 39 1 7.7319 5.4273 -0.0020 40 1 3.8436 4.7305 -1.6569 41 1 2.3532 6.6878 -1.6543 42 1 1.4530 8.5431 -0.3806 43 1 2.3620 9.2420 0.9809 44 1 0.7388 12.1495 -0.5921 45 1 4.5315 8.3628 1.6089 46 1 6.0264 6.4090 1.6262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243237524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:52 Heat of formation + Delta-G solvation = -75.994378 kcal Electronic energy + Delta-G solvation = -26538.230667 eV Core-core repulsion = 22691.755049 eV Total energy + Delta-G solvation = -3846.475618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.81850 -41.39100 -39.89279 -38.35834 -35.93266 -35.59330 -33.91355 -31.83588 -31.59573 -30.99310 -29.73857 -28.35877 -25.59708 -25.19224 -23.52731 -23.45602 -22.64862 -22.04565 -21.44546 -19.17090 -18.53504 -18.39734 -17.69325 -17.33634 -16.94753 -16.53947 -16.35814 -15.96133 -15.86485 -15.66742 -15.53865 -15.21446 -14.57957 -14.38642 -14.28061 -14.20933 -14.17396 -13.78592 -13.69648 -13.36243 -13.25893 -13.02030 -12.98869 -12.69879 -12.58038 -12.43174 -12.13810 -11.98910 -11.84403 -11.74641 -11.71070 -11.53240 -11.40377 -11.33707 -10.62018 -10.28543 -9.74311 -9.41630 -8.83367 -8.20527 -6.34510 -0.13217 0.18826 0.61263 0.73832 1.38775 1.39220 1.52984 2.17725 2.38556 2.50694 3.00147 3.09455 3.25492 3.55237 3.76271 3.93937 3.95506 4.05559 4.10477 4.11072 4.19113 4.20417 4.34602 4.37865 4.41237 4.52894 4.62770 4.68421 4.71741 4.78173 4.87667 4.94409 5.00256 5.05094 5.10310 5.11001 5.17248 5.21923 5.26757 5.34130 5.35108 5.40233 5.45627 5.59812 5.67721 5.72191 5.75693 6.07472 6.10105 6.24178 6.43836 6.78121 7.34045 8.88377 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009093 B = 0.003134 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.613479 B = 8932.041056 C =11565.466805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.121 4.121 4 C 0.050 3.950 5 O -0.321 6.321 6 C 0.127 3.873 7 C -0.173 4.173 8 C -0.104 4.104 9 C 0.047 3.953 10 F -0.147 7.147 11 C -0.111 4.111 12 C -0.057 4.057 13 C -0.069 4.069 14 C -0.082 4.082 15 C -0.135 4.135 16 C -0.056 4.056 17 C 0.056 3.944 18 C -0.527 4.527 19 H 0.053 0.947 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.135 4.135 27 C -0.100 4.100 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.266 0.734 45 H 0.117 0.883 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 -27.246 1.360 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.158 4.158 4 C -0.024 4.024 5 O -0.235 6.235 6 C 0.081 3.919 7 C -0.191 4.191 8 C -0.123 4.123 9 C 0.028 3.972 10 F -0.126 7.126 11 C -0.130 4.130 12 C -0.058 4.058 13 C -0.069 4.069 14 C -0.100 4.100 15 C -0.154 4.154 16 C -0.056 4.056 17 C 0.019 3.981 18 C -0.565 4.565 19 H 0.072 0.928 20 C -0.194 4.194 21 N -0.570 5.570 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.154 4.154 27 C -0.118 4.118 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.187 0.813 38 H 0.184 0.816 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.132 0.868 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.075 0.925 45 H 0.135 0.865 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.192 -26.985 1.385 28.235 hybrid contribution 0.088 1.285 -0.396 1.348 sum 8.280 -25.700 0.989 27.019 Atomic orbital electron populations 1.21784 0.95502 1.02285 1.01770 1.21397 0.96177 0.94281 1.03270 1.21591 0.92506 0.98792 1.02962 1.23146 0.95616 0.80700 1.02921 1.86192 1.18214 1.31107 1.87942 1.19118 0.83411 0.93028 0.96311 1.21303 0.92705 0.99031 1.06085 1.21248 0.95792 0.95964 0.99265 1.17569 0.76956 0.94621 1.08062 1.91475 1.30175 1.96451 1.94532 1.21097 0.91509 0.99450 1.00914 1.17895 0.91814 0.90423 1.05649 1.18495 0.96690 0.94082 0.97619 1.21097 0.93855 0.96949 0.98095 1.21001 1.00722 0.94297 0.99334 1.20463 0.96022 0.94998 0.94155 1.18122 0.93203 0.90691 0.96096 1.21389 1.08110 1.00432 1.26596 0.92842 1.25925 0.95167 1.00683 0.97602 1.70082 1.17245 1.25841 1.43792 0.85384 0.78604 0.78471 0.78529 1.19030 1.20073 1.20067 1.21017 0.95945 0.98607 0.99784 1.21268 0.99186 0.92715 0.98646 0.93032 0.91467 0.93102 0.90592 0.90694 0.92084 0.91790 0.90332 0.90091 0.81257 0.81612 0.84032 0.85193 0.86779 0.97825 0.97769 0.92530 0.86505 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.11 -1.18 5.93 30.59 0.18 -0.99 16 3 C -0.12 -1.83 5.58 30.59 0.17 -1.65 16 4 C 0.05 0.73 4.74 71.98 0.34 1.07 16 5 O -0.32 -7.41 8.50 -92.34 -0.78 -8.20 16 6 C 0.13 2.89 6.60 22.72 0.15 3.04 16 7 C -0.17 -2.76 9.03 22.33 0.20 -2.55 16 8 C -0.10 -1.68 10.01 22.34 0.22 -1.46 16 9 C 0.05 1.01 7.29 22.34 0.16 1.17 16 10 F -0.15 -3.35 17.26 44.97 0.78 -2.58 16 11 C -0.11 -2.70 9.48 22.52 0.21 -2.49 16 12 C -0.06 -1.53 5.49 -19.96 -0.11 -1.64 16 13 C -0.07 -2.24 5.27 -20.05 -0.11 -2.35 16 14 C -0.08 -2.86 8.78 22.49 0.20 -2.66 16 15 C -0.14 -5.57 9.68 22.24 0.22 -5.36 16 16 C -0.06 -2.59 5.07 -19.82 -0.10 -2.69 16 17 C 0.06 3.07 5.10 29.10 0.15 3.22 16 18 C -0.53 -30.79 9.09 25.60 0.23 -30.56 16 19 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 20 C 0.00 0.25 5.46 84.66 0.46 0.71 16 21 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 22 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.14 -5.50 9.68 22.24 0.22 -5.29 16 27 C -0.10 -3.40 9.51 22.49 0.21 -3.19 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 36 H 0.08 0.85 7.66 -2.39 -0.02 0.83 16 37 H 0.17 1.53 6.29 -2.91 -0.02 1.52 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.14 3.37 8.04 -2.91 -0.02 3.35 16 40 H 0.13 3.99 7.70 -2.91 -0.02 3.97 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 43 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 46 H 0.14 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -68.27 390.40 6.99 -61.28 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.96 Total: 13.62 kcal Atomic # 6 Polarization: -58.47 SS G_CDS: 3.73 Total: -54.75 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.38 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.78 Total: -8.20 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.27 6.99 -61.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243237524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.709 kcal (2) G-P(sol) polarization free energy of solvation -68.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds