Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46900 * 2 1 4 4 C 1.53001 * 109.47161 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47232 * 179.97438 * 4 3 2 6 6 C 1.35789 * 116.99891 * 180.02562 * 5 4 3 7 7 C 1.38540 * 120.12741 * 359.97313 * 6 5 4 8 8 C 1.38223 * 120.14470 * 180.02562 * 7 6 5 9 9 C 1.38435 * 120.39986 * 0.02562 * 8 7 6 10 10 C 1.38137 * 120.24474 * 359.69992 * 9 8 7 11 11 F 1.35100 * 120.07192 * 180.28200 * 10 9 8 12 12 C 1.39854 * 119.85314 * 0.55062 * 10 9 8 13 13 C 1.47801 * 120.19346 * 179.74481 * 12 10 9 14 14 C 1.40050 * 119.89108 * 269.72287 * 13 12 10 15 15 C 1.36180 * 120.11218 * 179.97438 * 14 13 12 16 16 C 1.40980 * 119.88641 * 359.97438 * 15 14 13 17 17 C 1.40981 * 120.11088 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99716 * 150.08059 * 17 16 15 19 19 C 1.39972 * 120.00216 * 330.08363 * 17 16 15 20 20 N 1.30824 * 120.00091 * 161.73043 * 19 17 16 21 21 Si 1.86799 * 119.99576 * 341.73617 * 19 17 16 22 22 H 1.48507 * 109.47223 * 95.41851 * 21 19 17 23 23 H 1.48499 * 109.46705 * 215.41362 * 21 19 17 24 24 H 1.48500 * 109.47141 * 335.41417 * 21 19 17 25 25 C 1.40948 * 119.77824 * 359.97438 * 16 15 14 26 26 C 1.36218 * 119.88655 * 0.27907 * 25 16 15 27 27 C 1.50697 * 119.94089 * 179.69694 * 26 25 16 28 28 H 1.08998 * 109.46987 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47376 * 300.00065 * 1 2 3 30 30 H 1.08997 * 109.47062 * 60.00264 * 1 2 3 31 31 H 1.08999 * 109.47511 * 239.99417 * 2 1 3 32 32 H 1.09007 * 109.46778 * 119.99314 * 2 1 3 33 33 H 1.08999 * 109.47514 * 59.99420 * 3 2 1 34 34 H 1.08997 * 109.47048 * 299.99745 * 3 2 1 35 35 H 1.08999 * 109.47170 * 59.99466 * 4 3 2 36 36 H 1.09006 * 109.47046 * 300.00040 * 4 3 2 37 37 H 1.08006 * 119.92540 * 0.04925 * 7 6 5 38 38 H 1.08000 * 119.79965 * 179.97438 * 8 7 6 39 39 H 1.07996 * 119.87291 * 179.97438 * 9 8 7 40 40 H 1.08000 * 119.94024 * 359.96259 * 14 13 12 41 41 H 1.08006 * 120.05839 * 180.02562 * 15 14 13 42 42 H 0.97000 * 119.99989 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.05485 * 180.02562 * 25 16 15 44 44 H 1.08998 * 109.46833 * 90.00358 * 27 26 25 45 45 H 1.09000 * 109.46924 * 210.00100 * 27 26 25 46 46 H 1.08997 * 109.47178 * 329.99897 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3924 2.9677 0.0000 7 6 6.2388 1.8709 0.0010 8 6 7.6092 2.0516 0.0015 9 6 8.1476 3.3270 0.0014 10 6 7.3188 4.4321 -0.0053 11 9 7.8480 5.6751 -0.0111 12 6 5.9308 4.2614 -0.0005 13 6 5.0370 5.4386 -0.0020 14 6 4.6140 5.9952 1.2115 15 6 3.7910 7.0802 1.2154 16 6 3.3652 7.6433 -0.0049 17 6 2.5136 8.7668 -0.0064 18 1 2.5602 9.4786 -0.8173 19 6 1.6078 8.9599 1.0431 20 7 1.0812 10.1405 1.2438 21 14 1.1511 7.5317 2.1571 22 1 2.0049 7.5587 3.3719 23 1 -0.2756 7.6488 2.5522 24 1 1.3608 6.2523 1.4329 25 6 3.7947 7.0799 -1.2234 26 6 4.6138 5.9915 -1.2167 27 6 5.0681 5.3840 -2.5188 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8890 36 1 3.9330 0.9288 0.8909 37 1 5.8269 0.8725 0.0011 38 1 8.2638 1.1927 0.0027 39 1 9.2195 3.4583 0.0022 40 1 4.9410 5.5632 2.1458 41 1 3.4656 7.5090 2.1517 42 1 0.4531 10.2742 1.9709 43 1 3.4716 7.5080 -2.1609 44 1 5.9988 5.8555 -2.8344 45 1 5.2301 4.3146 -2.3838 46 1 4.3042 5.5426 -3.2798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243270554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -77.605732 kcal Electronic energy + Delta-G solvation = -27910.572620 eV Core-core repulsion = 24064.027128 eV Total energy + Delta-G solvation = -3846.545492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.80522 -41.22321 -39.74887 -38.26232 -35.97647 -35.84892 -33.78088 -33.01872 -31.05575 -30.82062 -29.80504 -27.92084 -26.77594 -25.10666 -23.67848 -22.76386 -22.51630 -22.14029 -21.60227 -19.35519 -18.96069 -17.81126 -17.63119 -17.35225 -16.97331 -16.88618 -16.57917 -15.92128 -15.60803 -15.53133 -15.43633 -15.35747 -14.74356 -14.49730 -14.37537 -14.06036 -13.87585 -13.80570 -13.67949 -13.47600 -13.25023 -13.05725 -12.71435 -12.67423 -12.65732 -12.42700 -12.34259 -12.00451 -11.97988 -11.86048 -11.78284 -11.57371 -11.44399 -11.43337 -11.03925 -9.61194 -9.51969 -9.25300 -9.14837 -8.96013 -6.52311 0.18483 0.37012 0.66839 0.87714 1.20953 1.34436 1.44188 2.09046 2.16863 2.50799 2.64448 3.41941 3.45404 3.78731 3.91970 3.92181 4.09961 4.11810 4.16293 4.20087 4.21661 4.29647 4.35868 4.43573 4.49137 4.53804 4.62581 4.66051 4.80148 4.84085 4.91971 4.96742 4.98087 5.02240 5.05058 5.08845 5.20139 5.22777 5.27838 5.31247 5.33527 5.39014 5.43132 5.63094 5.75038 5.87146 5.88812 6.01135 6.20559 6.36406 6.53514 6.71019 6.81398 8.12320 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008330 B = 0.005210 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.646315 B = 5373.244655 C = 7793.711077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.123 4.123 4 C 0.053 3.947 5 O -0.327 6.327 6 C 0.151 3.849 7 C -0.215 4.215 8 C -0.045 4.045 9 C -0.191 4.191 10 C 0.116 3.884 11 F -0.148 7.148 12 C -0.104 4.104 13 C -0.160 4.160 14 C -0.062 4.062 15 C -0.253 4.253 16 C 0.082 3.918 17 C -0.482 4.482 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.844 5.844 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.258 1.258 25 C -0.223 4.223 26 C -0.035 4.035 27 C -0.098 4.098 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.295 0.705 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -24.742 -1.566 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.161 4.161 4 C -0.022 4.022 5 O -0.241 6.241 6 C 0.105 3.895 7 C -0.233 4.233 8 C -0.063 4.063 9 C -0.209 4.209 10 C 0.096 3.904 11 F -0.127 7.127 12 C -0.106 4.106 13 C -0.161 4.161 14 C -0.080 4.080 15 C -0.272 4.272 16 C 0.079 3.921 17 C -0.511 4.511 18 H 0.077 0.923 19 C -0.162 4.162 20 N -0.470 5.470 21 Si 0.786 3.214 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.182 1.182 25 C -0.243 4.243 26 C -0.035 4.035 27 C -0.154 4.154 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.180 0.820 38 H 0.194 0.806 39 H 0.174 0.826 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.018 -24.323 -1.475 25.358 hybrid contribution -0.526 0.942 0.548 1.210 sum 6.492 -23.381 -0.927 24.283 Atomic orbital electron populations 1.21786 0.95413 1.02426 1.01672 1.21388 0.96241 0.93760 1.03445 1.21615 0.92783 0.99114 1.02547 1.23126 0.95462 0.80685 1.02896 1.86181 1.18916 1.31166 1.87807 1.18999 0.83145 0.92495 0.94849 1.21558 0.94406 0.98242 1.09115 1.21215 0.94289 0.96832 0.93954 1.21253 1.00908 0.91157 1.07619 1.17938 0.90389 0.80019 1.02009 1.91458 1.86352 1.41090 1.93794 1.18072 0.91255 0.91849 1.09419 1.17889 1.06481 0.99503 0.92255 1.20565 0.95948 0.94717 0.96782 1.20701 1.07010 1.02762 0.96702 1.17874 0.91036 0.90931 0.92227 1.19421 1.18181 1.06664 1.06823 0.92281 1.26747 0.94099 0.98313 0.97016 1.69714 1.24592 1.23767 1.28905 0.85539 0.77160 0.79966 0.78747 1.18734 1.19809 1.18222 1.20723 1.06840 1.00014 0.96675 1.19610 0.94706 0.94224 0.94932 1.20677 1.01116 1.00125 0.93525 0.91047 0.93300 0.93103 0.90301 0.90516 0.92636 0.92234 0.89978 0.90294 0.81977 0.80629 0.82581 0.87538 0.88735 0.89455 0.87975 0.91302 0.91754 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.11 -1.55 5.93 30.59 0.18 -1.36 16 3 C -0.12 -2.56 5.58 30.59 0.17 -2.39 16 4 C 0.05 1.07 4.74 71.98 0.34 1.41 16 5 O -0.33 -10.32 9.59 -91.18 -0.87 -11.19 16 6 C 0.15 4.50 6.38 22.80 0.15 4.65 16 7 C -0.21 -4.32 9.03 22.34 0.20 -4.12 16 8 C -0.05 -0.77 10.03 22.31 0.22 -0.55 16 9 C -0.19 -4.27 10.01 22.29 0.22 -4.05 16 10 C 0.12 3.72 7.28 22.64 0.16 3.88 16 11 F -0.15 -5.48 16.83 44.97 0.76 -4.72 16 12 C -0.10 -3.72 3.86 -19.90 -0.08 -3.80 16 13 C -0.16 -7.04 4.52 -19.88 -0.09 -7.13 16 14 C -0.06 -2.93 9.71 22.23 0.22 -2.72 16 15 C -0.25 -13.19 7.10 22.46 0.16 -13.03 16 16 C 0.08 4.52 5.10 -21.27 -0.11 4.41 16 17 C -0.48 -28.52 9.54 23.36 0.22 -28.30 16 18 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 19 C 0.05 3.01 5.40 85.26 0.46 3.47 16 20 N -0.84 -47.79 13.93 21.83 0.30 -47.48 16 21 Si 0.96 45.60 24.51 68.60 1.68 47.28 16 22 H -0.26 -11.88 6.70 99.48 0.67 -11.22 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.26 -12.80 6.87 99.48 0.68 -12.12 16 25 C -0.22 -11.27 9.36 22.46 0.21 -11.06 16 26 C -0.03 -1.55 5.87 -19.91 -0.12 -1.66 16 27 C -0.10 -3.46 9.60 71.23 0.68 -2.78 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.28 7.66 -2.39 -0.02 1.27 16 36 H 0.08 1.28 7.66 -2.38 -0.02 1.26 16 37 H 0.16 2.13 6.29 -2.91 -0.02 2.11 16 38 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 41 H 0.09 4.92 4.73 -2.91 -0.01 4.90 16 42 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 43 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.12 6.82 -2.39 -0.02 2.10 16 46 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 Total: -1.00 -69.67 379.46 6.71 -62.96 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.91 Total: 19.84 kcal Atomic # 6 Polarization: -70.61 SS G_CDS: 3.93 Total: -66.68 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.30 Total: -47.48 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.87 Total: -11.19 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.76 Total: -4.72 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.68 Total: 47.28 kcal Total: -69.67 6.71 -62.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243270554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.643 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds