Wall clock time and date at job start Tue Mar 31 2020 14:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.53002 * 109.46969 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47079 * 179.97438 * 4 3 2 6 6 C 1.35847 * 116.99705 * 180.02562 * 5 4 3 7 7 C 1.38582 * 120.10601 * 359.72874 * 6 5 4 8 8 C 1.38206 * 120.11193 * 179.71996 * 7 6 5 9 9 C 1.38340 * 120.32778 * 0.55195 * 8 7 6 10 10 C 1.38252 * 120.21236 * 359.72949 * 9 8 7 11 11 F 1.35093 * 120.05716 * 179.97438 * 10 9 8 12 12 C 1.39511 * 119.87718 * 359.97438 * 10 9 8 13 13 C 1.48309 * 120.15887 * 179.97438 * 12 10 9 14 14 C 1.39379 * 120.12082 * 114.74679 * 13 12 10 15 15 C 1.38010 * 119.87262 * 179.74900 * 14 13 12 16 16 C 1.38329 * 120.12076 * 0.55343 * 15 14 13 17 17 C 1.50703 * 119.87068 * 179.71939 * 16 15 14 18 18 C 1.50695 * 109.47519 * 269.97924 * 17 16 15 19 19 H 1.08002 * 119.99748 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00020 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00278 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99852 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47267 * 60.00489 * 22 20 18 24 24 H 1.48503 * 109.46924 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47126 * 300.00100 * 22 20 18 26 26 C 1.38323 * 120.25725 * 359.70180 * 16 15 14 27 27 C 1.38012 * 120.12259 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46986 * 60.00258 * 1 2 3 29 29 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00487 * 1 2 3 31 31 H 1.08996 * 109.47407 * 239.99513 * 2 1 3 32 32 H 1.09000 * 109.46986 * 119.99742 * 2 1 3 33 33 H 1.09004 * 109.47298 * 59.99824 * 3 2 1 34 34 H 1.09004 * 109.47552 * 299.99695 * 3 2 1 35 35 H 1.09004 * 109.46930 * 59.99996 * 4 3 2 36 36 H 1.09000 * 109.47312 * 299.99939 * 4 3 2 37 37 H 1.08003 * 119.94616 * 359.97331 * 7 6 5 38 38 H 1.07995 * 119.83284 * 180.25826 * 8 7 6 39 39 H 1.08001 * 119.89104 * 179.69595 * 9 8 7 40 40 H 1.08003 * 120.06382 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.93867 * 180.30158 * 15 14 13 42 42 H 1.09004 * 109.47033 * 29.98296 * 17 16 15 43 43 H 1.09005 * 109.46815 * 149.98010 * 17 16 15 44 44 H 0.97005 * 120.00224 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.94089 * 180.02562 * 26 16 15 46 46 H 1.07996 * 120.06672 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3931 2.9677 0.0000 7 6 6.2393 1.8703 0.0061 8 6 7.6094 2.0511 0.0002 9 6 8.1457 3.3263 -0.0004 10 6 7.3141 4.4308 -0.0007 11 9 7.8412 5.6746 -0.0008 12 6 5.9297 4.2583 -0.0010 13 6 5.0318 5.4387 -0.0007 14 6 4.2068 5.6901 -1.0956 15 6 3.3695 6.7872 -1.0878 16 6 3.3564 7.6427 -0.0009 17 6 2.4444 8.8424 -0.0010 18 6 3.1655 10.0216 -0.6014 19 1 4.1824 9.9130 -0.9486 20 6 2.5267 11.2388 -0.7084 21 7 1.2883 11.3709 -0.2860 22 14 3.4204 12.7003 -1.4533 23 1 3.8171 12.3796 -2.8479 24 1 2.5217 13.8825 -1.4532 25 1 4.6329 13.0008 -0.6503 26 6 4.1768 7.4010 1.0863 27 6 5.0141 6.3040 1.0918 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9288 0.8909 37 1 5.8273 0.8719 0.0114 38 1 8.2647 1.1926 0.0008 39 1 9.2175 3.4595 -0.0001 40 1 4.2196 5.0253 -1.9467 41 1 2.7263 6.9803 -1.9335 42 1 1.5543 8.6222 -0.5905 43 1 2.1531 9.0775 1.0228 44 1 0.8390 12.2273 -0.3610 45 1 4.1621 8.0721 1.9323 46 1 5.6540 6.1159 1.9412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243271243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:16 Heat of formation + Delta-G solvation = -60.771100 kcal Electronic energy + Delta-G solvation = -26817.530062 eV Core-core repulsion = 22971.714575 eV Total energy + Delta-G solvation = -3845.815487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.82017 -40.37545 -38.46204 -37.47106 -35.34755 -33.73131 -32.24814 -30.36841 -30.17987 -29.95858 -29.10654 -26.64713 -24.47937 -23.74933 -22.28136 -22.12974 -21.67500 -21.26159 -20.01009 -18.49926 -16.78706 -16.63559 -16.61173 -16.25481 -16.02130 -15.59668 -15.07669 -14.91662 -14.69952 -14.54815 -14.30716 -14.12721 -13.86201 -13.14117 -12.99626 -12.80461 -12.73503 -12.57708 -12.44959 -12.10803 -11.96849 -11.82342 -11.54055 -11.38467 -11.26303 -11.20998 -11.18495 -10.88104 -10.80244 -10.70097 -10.47192 -10.19071 -9.52777 -9.41287 -8.85560 -8.42895 -8.39109 -8.21103 -7.58436 -6.01141 -4.04835 0.94238 1.13808 2.10309 2.15419 2.87737 3.35039 3.38423 3.42200 3.43698 4.23486 4.39286 4.46717 4.53591 4.55453 4.65137 4.72310 4.74671 4.88994 4.90427 4.97379 5.12681 5.18225 5.24328 5.33158 5.45341 5.46256 5.57588 5.60279 5.61503 5.75707 5.81886 5.88127 5.92279 5.98233 6.00552 6.05554 6.13227 6.28555 6.30200 6.60123 6.71025 6.75526 7.13141 7.21011 7.23519 7.28000 7.53932 7.77756 7.89769 7.94912 8.35474 9.00331 9.58791 11.08662 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.003192 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.770347 B = 8769.167322 C =11091.793678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.122 4.122 4 C 0.058 3.942 5 O -0.295 6.295 6 C 0.168 3.832 7 C -0.224 4.224 8 C -0.057 4.057 9 C -0.195 4.195 10 C 0.146 3.854 11 F -0.125 7.125 12 C -0.097 4.097 13 C -0.081 4.081 14 C -0.089 4.089 15 C -0.126 4.126 16 C -0.024 4.024 17 C 0.047 3.953 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.126 4.126 27 C -0.098 4.098 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.029 0.971 43 H 0.029 0.971 44 H 0.262 0.738 45 H 0.119 0.881 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.988 -25.757 1.230 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.159 4.159 4 C -0.018 4.018 5 O -0.208 6.208 6 C 0.122 3.878 7 C -0.243 4.243 8 C -0.075 4.075 9 C -0.214 4.214 10 C 0.127 3.873 11 F -0.104 7.104 12 C -0.098 4.098 13 C -0.081 4.081 14 C -0.107 4.107 15 C -0.144 4.144 16 C -0.024 4.024 17 C 0.010 3.990 18 C -0.549 4.549 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.144 4.144 27 C -0.116 4.116 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.137 0.863 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.685 -25.432 1.248 26.326 hybrid contribution 0.725 0.850 -0.411 1.190 sum 7.410 -24.582 0.837 25.688 Atomic orbital electron populations 1.21755 0.95103 1.01759 1.02408 1.21419 0.96559 0.95573 1.02158 1.21594 0.92267 0.97685 1.04378 1.22900 0.95760 0.81860 1.01235 1.86193 1.18107 1.28874 1.87608 1.18664 0.82906 0.92186 0.94045 1.21199 0.94232 0.98050 1.10811 1.20718 0.94267 0.96405 0.96139 1.20959 1.00258 0.91536 1.08618 1.17435 0.90086 0.79940 0.99862 1.91543 1.86297 1.39227 1.93302 1.18113 0.91273 0.91958 1.08490 1.18054 0.99195 0.94590 0.96231 1.20928 0.95772 0.97299 0.96750 1.20979 0.99887 0.94752 0.98823 1.20756 0.94891 0.95052 0.91703 1.18377 0.93361 0.89008 0.98259 1.21029 0.99610 0.93942 1.40351 0.92485 1.25004 0.94921 0.98812 0.95561 1.69949 1.11330 1.25117 1.47008 0.86598 0.79521 0.81732 0.79856 1.20152 1.21243 1.20145 1.20970 0.97088 0.97004 0.99300 1.20980 0.98914 0.94793 0.96941 0.92384 0.92577 0.92401 0.91800 0.91812 0.90504 0.90470 0.92023 0.92037 0.84991 0.84954 0.84666 0.87314 0.86319 0.95294 0.95301 0.92811 0.86280 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -1.03 5.58 -26.73 -0.15 -1.18 16 4 C 0.06 0.51 4.74 37.16 0.18 0.69 16 5 O -0.30 -3.88 9.35 -19.26 -0.18 -4.06 16 6 C 0.17 2.22 6.66 -38.88 -0.26 1.96 16 7 C -0.22 -2.25 9.03 -39.47 -0.36 -2.61 16 8 C -0.06 -0.52 10.03 -39.56 -0.40 -0.92 16 9 C -0.19 -2.13 10.01 -39.54 -0.40 -2.53 16 10 C 0.15 2.09 7.24 -39.10 -0.28 1.81 16 11 F -0.13 -2.02 16.67 2.25 0.04 -1.98 16 12 C -0.10 -1.49 5.33 -104.71 -0.56 -2.04 16 13 C -0.08 -1.45 4.63 -104.91 -0.49 -1.94 16 14 C -0.09 -1.65 9.47 -39.24 -0.37 -2.02 16 15 C -0.13 -2.61 9.68 -39.63 -0.38 -2.99 16 16 C -0.02 -0.54 5.07 -104.56 -0.53 -1.08 16 17 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 18 C -0.51 -14.65 9.09 -34.44 -0.31 -14.97 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C -0.13 -2.61 9.68 -39.63 -0.38 -2.99 16 27 C -0.10 -1.83 9.57 -39.24 -0.38 -2.21 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 36 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16 37 H 0.13 0.97 6.29 -52.48 -0.33 0.64 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 41 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 46 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 391.57 15.07 5.90 5.90 Total: -1.00 -31.69 391.57 -10.63 -42.32 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.00 Total: -1.20 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -5.10 Total: -31.88 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.18 Total: -4.06 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.69 -10.63 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243271243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.452 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds