Wall clock time and date at job start Tue Mar 31 2020 14:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46972 * 2 1 4 4 C 1.53002 * 109.46969 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47079 * 179.97438 * 4 3 2 6 6 C 1.35847 * 116.99705 * 180.02562 * 5 4 3 7 7 C 1.38582 * 120.10601 * 359.72874 * 6 5 4 8 8 C 1.38206 * 120.11193 * 179.71996 * 7 6 5 9 9 C 1.38340 * 120.32778 * 0.55195 * 8 7 6 10 10 C 1.38252 * 120.21236 * 359.72949 * 9 8 7 11 11 F 1.35093 * 120.05716 * 179.97438 * 10 9 8 12 12 C 1.39511 * 119.87718 * 359.97438 * 10 9 8 13 13 C 1.48309 * 120.15887 * 179.97438 * 12 10 9 14 14 C 1.39379 * 120.12082 * 114.74679 * 13 12 10 15 15 C 1.38010 * 119.87262 * 179.74900 * 14 13 12 16 16 C 1.38329 * 120.12076 * 0.55343 * 15 14 13 17 17 C 1.50703 * 119.87068 * 179.71939 * 16 15 14 18 18 C 1.50695 * 109.47519 * 269.97924 * 17 16 15 19 19 H 1.08002 * 119.99748 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00020 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00278 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99852 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47267 * 60.00489 * 22 20 18 24 24 H 1.48503 * 109.46924 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47126 * 300.00100 * 22 20 18 26 26 C 1.38323 * 120.25725 * 359.70180 * 16 15 14 27 27 C 1.38012 * 120.12259 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.46986 * 60.00258 * 1 2 3 29 29 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00487 * 1 2 3 31 31 H 1.08996 * 109.47407 * 239.99513 * 2 1 3 32 32 H 1.09000 * 109.46986 * 119.99742 * 2 1 3 33 33 H 1.09004 * 109.47298 * 59.99824 * 3 2 1 34 34 H 1.09004 * 109.47552 * 299.99695 * 3 2 1 35 35 H 1.09004 * 109.46930 * 59.99996 * 4 3 2 36 36 H 1.09000 * 109.47312 * 299.99939 * 4 3 2 37 37 H 1.08003 * 119.94616 * 359.97331 * 7 6 5 38 38 H 1.07995 * 119.83284 * 180.25826 * 8 7 6 39 39 H 1.08001 * 119.89104 * 179.69595 * 9 8 7 40 40 H 1.08003 * 120.06382 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.93867 * 180.30158 * 15 14 13 42 42 H 1.09004 * 109.47033 * 29.98296 * 17 16 15 43 43 H 1.09005 * 109.46815 * 149.98010 * 17 16 15 44 44 H 0.97005 * 120.00224 * 179.97438 * 21 20 18 45 45 H 1.07998 * 119.94089 * 180.02562 * 26 16 15 46 46 H 1.07996 * 120.06672 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3931 2.9677 0.0000 7 6 6.2393 1.8703 0.0061 8 6 7.6094 2.0511 0.0002 9 6 8.1457 3.3263 -0.0004 10 6 7.3141 4.4308 -0.0007 11 9 7.8412 5.6746 -0.0008 12 6 5.9297 4.2583 -0.0010 13 6 5.0318 5.4387 -0.0007 14 6 4.2068 5.6901 -1.0956 15 6 3.3695 6.7872 -1.0878 16 6 3.3564 7.6427 -0.0009 17 6 2.4444 8.8424 -0.0010 18 6 3.1655 10.0216 -0.6014 19 1 4.1824 9.9130 -0.9486 20 6 2.5267 11.2388 -0.7084 21 7 1.2883 11.3709 -0.2860 22 14 3.4204 12.7003 -1.4533 23 1 3.8171 12.3796 -2.8479 24 1 2.5217 13.8825 -1.4532 25 1 4.6329 13.0008 -0.6503 26 6 4.1768 7.4010 1.0863 27 6 5.0141 6.3040 1.0918 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9288 0.8909 37 1 5.8273 0.8719 0.0114 38 1 8.2647 1.1926 0.0008 39 1 9.2175 3.4595 -0.0001 40 1 4.2196 5.0253 -1.9467 41 1 2.7263 6.9803 -1.9335 42 1 1.5543 8.6222 -0.5905 43 1 2.1531 9.0775 1.0228 44 1 0.8390 12.2273 -0.3610 45 1 4.1621 8.0721 1.9323 46 1 5.6540 6.1159 1.9412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243271243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:14 Heat of formation + Delta-G solvation = -74.752940 kcal Electronic energy + Delta-G solvation = -26818.136360 eV Core-core repulsion = 22971.714575 eV Total energy + Delta-G solvation = -3846.421785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.92609 -41.31568 -39.93289 -38.36671 -35.97168 -35.61890 -33.90329 -31.81077 -31.48000 -30.99526 -29.94808 -28.37115 -25.49152 -25.15616 -23.57194 -23.43402 -22.74100 -22.05066 -21.47272 -19.41127 -18.54227 -17.77561 -17.71594 -17.37200 -16.96812 -16.80102 -16.66088 -15.96633 -15.91344 -15.70197 -15.55962 -15.48874 -14.55644 -14.47593 -14.29566 -14.21582 -13.92824 -13.75817 -13.55155 -13.37354 -13.31635 -13.00194 -12.73717 -12.68154 -12.58138 -12.50771 -12.23098 -11.98554 -11.87254 -11.80362 -11.79922 -11.58166 -11.43406 -11.37059 -10.62570 -9.94127 -9.79254 -9.39877 -9.07106 -8.22174 -6.36077 -0.03007 0.25318 0.56337 0.61118 1.37420 1.40571 1.48981 2.07642 2.37673 2.55497 2.93438 3.07853 3.34776 3.56182 3.85021 3.93554 3.99635 4.05052 4.06324 4.10509 4.13980 4.22813 4.31124 4.36779 4.39604 4.44310 4.62543 4.66257 4.67195 4.85819 4.87197 4.93342 5.03423 5.05373 5.08377 5.13027 5.21789 5.25443 5.32089 5.32809 5.34012 5.35773 5.44535 5.55872 5.60900 5.71637 5.76669 6.03039 6.07328 6.21275 6.42706 6.75611 7.32264 8.86837 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.003192 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.770347 B = 8769.167322 C =11091.793678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.122 4.122 4 C 0.052 3.948 5 O -0.325 6.325 6 C 0.161 3.839 7 C -0.213 4.213 8 C -0.038 4.038 9 C -0.190 4.190 10 C 0.123 3.877 11 F -0.146 7.146 12 C -0.135 4.135 13 C -0.064 4.064 14 C -0.089 4.089 15 C -0.133 4.133 16 C -0.057 4.057 17 C 0.058 3.942 18 C -0.532 4.532 19 H 0.051 0.949 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.966 3.034 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.134 4.134 27 C -0.101 4.101 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.166 0.834 38 H 0.178 0.822 39 H 0.158 0.842 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.005 0.995 43 H 0.004 0.996 44 H 0.267 0.733 45 H 0.116 0.884 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.636 -29.056 0.724 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.159 4.159 4 C -0.022 4.022 5 O -0.238 6.238 6 C 0.114 3.886 7 C -0.232 4.232 8 C -0.056 4.056 9 C -0.209 4.209 10 C 0.104 3.896 11 F -0.124 7.124 12 C -0.137 4.137 13 C -0.064 4.064 14 C -0.107 4.107 15 C -0.151 4.151 16 C -0.057 4.057 17 C 0.021 3.979 18 C -0.569 4.569 19 H 0.070 0.930 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.152 4.152 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.183 0.817 38 H 0.195 0.805 39 H 0.176 0.824 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.023 0.977 43 H 0.022 0.978 44 H 0.076 0.924 45 H 0.134 0.866 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.331 -28.749 0.744 30.235 hybrid contribution -0.073 1.662 -0.227 1.679 sum 9.258 -27.087 0.517 28.631 Atomic orbital electron populations 1.21787 0.95497 1.02337 1.01736 1.21391 0.96176 0.94087 1.03365 1.21605 0.92566 0.98934 1.02836 1.23160 0.95541 0.80405 1.03064 1.86160 1.18460 1.31503 1.87695 1.18790 0.83384 0.92174 0.94213 1.21600 0.94345 0.98462 1.08762 1.21270 0.94461 0.96930 0.92935 1.21300 1.01112 0.91157 1.07340 1.17776 0.90172 0.80187 1.01477 1.91490 1.86493 1.40715 1.93708 1.18089 0.91414 0.91810 1.12349 1.18400 0.98123 0.94921 0.94944 1.21119 0.95226 0.96605 0.97766 1.21007 1.00582 0.95339 0.98202 1.20461 0.96312 0.95056 0.93835 1.18100 0.93252 0.90532 0.95994 1.21323 0.99581 0.95239 1.40789 0.93033 1.25921 0.95701 1.01829 0.95785 1.70070 1.12816 1.26097 1.47870 0.85496 0.78434 0.77950 0.79171 1.19279 1.20180 1.19372 1.20990 0.97465 0.97989 0.98719 1.21188 0.98521 0.94154 0.98060 0.93079 0.91339 0.93152 0.90486 0.90576 0.92210 0.91969 0.89951 0.90125 0.81666 0.80501 0.82403 0.85239 0.86498 0.97671 0.97750 0.92446 0.86555 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.11 -1.20 5.93 30.59 0.18 -1.02 16 3 C -0.12 -1.94 5.58 30.59 0.17 -1.77 16 4 C 0.05 0.80 4.74 71.98 0.34 1.14 16 5 O -0.32 -8.06 9.35 -91.83 -0.86 -8.92 16 6 C 0.16 3.84 6.66 22.72 0.15 4.00 16 7 C -0.21 -3.27 9.03 22.34 0.20 -3.07 16 8 C -0.04 -0.49 10.03 22.29 0.22 -0.27 16 9 C -0.19 -3.46 10.01 22.30 0.22 -3.23 16 10 C 0.12 3.33 7.24 22.58 0.16 3.49 16 11 F -0.15 -4.63 16.67 44.97 0.75 -3.88 16 12 C -0.14 -3.99 5.33 -19.92 -0.11 -4.10 16 13 C -0.06 -2.31 4.63 -20.05 -0.09 -2.41 16 14 C -0.09 -3.36 9.47 22.49 0.21 -3.15 16 15 C -0.13 -5.79 9.68 22.24 0.22 -5.58 16 16 C -0.06 -2.74 5.07 -19.82 -0.10 -2.84 16 17 C 0.06 3.30 5.10 29.10 0.15 3.44 16 18 C -0.53 -31.89 9.09 25.60 0.23 -31.66 16 19 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 22 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 C -0.13 -5.86 9.68 22.24 0.22 -5.64 16 27 C -0.10 -3.87 9.57 22.49 0.22 -3.65 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 0.91 7.67 -2.38 -0.02 0.89 16 36 H 0.08 0.91 7.65 -2.39 -0.02 0.90 16 37 H 0.17 1.42 6.29 -2.91 -0.02 1.40 16 38 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 41 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 42 H 0.00 0.30 8.08 -2.39 -0.02 0.28 16 43 H 0.00 0.25 8.08 -2.38 -0.02 0.23 16 44 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 45 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 46 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -72.79 391.57 6.93 -65.86 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.96 Total: 12.90 kcal Atomic # 6 Polarization: -60.41 SS G_CDS: 3.77 Total: -56.64 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.86 Total: -8.92 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.75 Total: -3.88 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.79 6.93 -65.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243271243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.894 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds