Wall clock time and date at job start Tue Mar 31 2020 14:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 C 1.52999 * 109.46872 * 180.02562 * 3 2 1 5 5 O 1.42909 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.35841 * 116.99471 * 179.97438 * 5 4 3 7 7 C 1.38586 * 120.11126 * 0.23048 * 6 5 4 8 8 C 1.38203 * 120.11435 * 180.28196 * 7 6 5 9 9 C 1.38339 * 120.32782 * 359.73718 * 8 7 6 10 10 C 1.38245 * 120.21623 * 0.02562 * 9 8 7 11 11 F 1.35102 * 120.06281 * 180.02562 * 10 9 8 12 12 C 1.39520 * 119.87768 * 359.97438 * 10 9 8 13 13 C 1.48311 * 120.16036 * 179.97438 * 12 10 9 14 14 C 1.39389 * 120.12097 * 244.97320 * 13 12 10 15 15 C 1.37993 * 119.87290 * 180.02562 * 14 13 12 16 16 C 1.38346 * 120.12343 * 359.74307 * 15 14 13 17 17 C 1.38307 * 120.25061 * 0.51652 * 16 15 14 18 18 C 1.50703 * 119.93864 * 179.76202 * 17 16 15 19 19 C 1.50701 * 109.47151 * 269.72594 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27762 * 19 18 17 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.38033 * 120.12471 * 359.48156 * 17 16 15 28 28 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47566 * 300.00030 * 1 2 3 30 30 H 1.09004 * 109.47348 * 60.00252 * 1 2 3 31 31 H 1.09002 * 109.46897 * 239.99832 * 2 1 3 32 32 H 1.08996 * 109.46530 * 119.99883 * 2 1 3 33 33 H 1.08997 * 109.47570 * 59.99725 * 3 2 1 34 34 H 1.09006 * 109.47254 * 299.99307 * 3 2 1 35 35 H 1.08996 * 109.47566 * 59.99970 * 4 3 2 36 36 H 1.09004 * 109.47348 * 299.99748 * 4 3 2 37 37 H 1.07991 * 119.94259 * 0.04083 * 7 6 5 38 38 H 1.08002 * 119.83374 * 179.72422 * 8 7 6 39 39 H 1.08001 * 119.89086 * 180.02562 * 9 8 7 40 40 H 1.08004 * 120.06754 * 0.04324 * 14 13 12 41 41 H 1.07995 * 119.93979 * 180.02562 * 15 14 13 42 42 H 1.08001 * 119.87595 * 180.25248 * 16 15 14 43 43 H 1.09000 * 109.47088 * 149.71733 * 18 17 16 44 44 H 1.09007 * 109.46560 * 29.72239 * 18 17 16 45 45 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.06093 * 180.27750 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7899 -0.0012 6 6 5.3930 2.9678 -0.0013 7 6 6.2392 1.8703 -0.0057 8 6 7.6094 2.0512 0.0001 9 6 8.1456 3.3264 0.0048 10 6 7.3141 4.4308 0.0043 11 9 7.8411 5.6748 0.0083 12 6 5.9296 4.2584 -0.0016 13 6 5.0317 5.4388 -0.0016 14 6 4.1980 5.6836 1.0883 15 6 3.3642 6.7831 1.0826 16 6 3.3586 7.6446 0.0002 17 6 4.1798 7.4037 -1.0864 18 6 4.1640 8.3438 -2.2641 19 6 3.1368 7.8792 -3.2641 20 1 2.5540 6.9916 -3.0667 21 6 2.9455 8.5836 -4.4337 22 7 2.0529 8.1750 -5.3089 23 14 3.9540 10.1184 -4.7753 24 1 5.1971 9.7437 -5.4962 25 1 3.1611 11.0561 -5.6104 26 1 4.3057 10.7757 -3.4909 27 6 5.0179 6.3070 -1.0916 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.8273 0.8720 -0.0096 38 1 8.2647 1.1927 0.0012 39 1 9.2174 3.4596 0.0089 40 1 4.2048 5.0142 1.9359 41 1 2.7182 6.9740 1.9267 42 1 2.7074 8.5062 0.0017 43 1 5.1481 8.3556 -2.7327 44 1 3.9116 9.3482 -1.9238 45 1 1.9180 8.6708 -6.1316 46 1 5.6620 6.1223 -1.9386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243272034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:23 Heat of formation + Delta-G solvation = -56.376312 kcal Electronic energy + Delta-G solvation = -27172.338093 eV Core-core repulsion = 23326.713178 eV Total energy + Delta-G solvation = -3845.624915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.79594 -40.32616 -38.52071 -37.42270 -35.26653 -33.60761 -32.35198 -31.22093 -30.21185 -29.45597 -28.52377 -27.40859 -24.40933 -23.47966 -22.87639 -22.01562 -21.50672 -20.98418 -19.82710 -18.37980 -16.76522 -16.70697 -16.55853 -16.34385 -15.97987 -15.60362 -15.50510 -14.84960 -14.63804 -14.45755 -14.40009 -14.05758 -13.77846 -13.13821 -13.00034 -12.93294 -12.81206 -12.53707 -12.29568 -12.03759 -11.91549 -11.75515 -11.68798 -11.59678 -11.35229 -11.17947 -11.10895 -11.02384 -10.71997 -10.64102 -10.26291 -10.02972 -9.92554 -9.33768 -8.88388 -8.54883 -8.42481 -8.02356 -7.74341 -6.04078 -4.02680 0.97807 1.19391 1.99342 2.14636 2.94715 3.31542 3.38853 3.42516 3.48322 4.27602 4.40701 4.44794 4.53055 4.62464 4.70333 4.80032 4.80350 4.93342 4.97072 5.02960 5.17560 5.25019 5.28298 5.30858 5.52355 5.53598 5.55002 5.61192 5.65707 5.78149 5.89055 5.90146 5.96717 5.97117 6.04153 6.08946 6.13123 6.18429 6.28355 6.53883 6.65523 6.71810 6.98965 7.06448 7.07413 7.14245 7.30979 7.63616 7.64541 7.75927 8.53718 9.01874 9.56476 11.08977 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.003879 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.162595 B = 7217.059377 C = 9062.418366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.122 4.122 4 C 0.058 3.942 5 O -0.295 6.295 6 C 0.172 3.828 7 C -0.224 4.224 8 C -0.055 4.055 9 C -0.195 4.195 10 C 0.148 3.852 11 F -0.126 7.126 12 C -0.102 4.102 13 C -0.050 4.050 14 C -0.114 4.114 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.030 4.030 18 C 0.014 3.986 19 C -0.511 4.511 20 H 0.074 0.926 21 C 0.069 3.931 22 N -0.901 5.901 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 C -0.097 4.097 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.023 0.977 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -16.880 14.454 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.160 4.160 4 C -0.017 4.017 5 O -0.207 6.207 6 C 0.126 3.874 7 C -0.243 4.243 8 C -0.073 4.073 9 C -0.214 4.214 10 C 0.129 3.871 11 F -0.105 7.105 12 C -0.104 4.104 13 C -0.050 4.050 14 C -0.133 4.133 15 C -0.142 4.142 16 C -0.133 4.133 17 C -0.030 4.030 18 C -0.023 4.023 19 C -0.549 4.549 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.540 5.540 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.115 4.115 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.141 -16.646 14.274 22.772 hybrid contribution 0.613 0.690 -0.439 1.023 sum 6.755 -15.956 13.835 22.172 Atomic orbital electron populations 1.21754 0.95132 1.01717 1.02413 1.21416 0.96547 0.95582 1.02133 1.21596 0.92258 0.97689 1.04426 1.22905 0.95806 0.81781 1.01230 1.86200 1.18032 1.28985 1.87483 1.18645 0.82985 0.92135 0.93677 1.21201 0.94229 0.98077 1.10759 1.20726 0.94263 0.96419 0.95930 1.20940 1.00237 0.91510 1.08704 1.17395 0.89991 0.79928 0.99816 1.91534 1.86319 1.39263 1.93335 1.18108 0.91318 0.91954 1.09018 1.18220 0.97509 0.93622 0.95675 1.20785 0.97147 0.97865 0.97461 1.20908 0.99350 0.95397 0.98539 1.21116 0.99001 0.99816 0.93346 1.20154 0.92657 0.95161 0.95013 1.18815 0.97819 0.93951 0.91697 1.20942 1.19676 1.12746 1.01505 0.90800 1.24988 0.95038 0.97379 0.95802 1.69905 1.34203 1.40088 1.09759 0.86821 0.80470 0.83599 0.78751 1.20170 1.21254 1.18879 1.21019 0.99579 0.94195 0.96677 0.92605 0.92512 0.92267 0.91716 0.91901 0.90648 0.90255 0.91905 0.92085 0.84916 0.84902 0.84626 0.87271 0.86789 0.86330 0.95885 0.95333 0.92662 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -1.19 5.58 -26.73 -0.15 -1.34 16 4 C 0.06 0.59 4.74 37.16 0.18 0.77 16 5 O -0.29 -4.27 9.33 -19.24 -0.18 -4.45 16 6 C 0.17 2.46 6.65 -38.88 -0.26 2.20 16 7 C -0.22 -2.47 9.03 -39.47 -0.36 -2.82 16 8 C -0.06 -0.55 10.03 -39.56 -0.40 -0.95 16 9 C -0.19 -2.26 10.01 -39.54 -0.40 -2.66 16 10 C 0.15 2.21 7.24 -39.10 -0.28 1.93 16 11 F -0.13 -2.06 16.67 2.25 0.04 -2.02 16 12 C -0.10 -1.67 5.33 -104.70 -0.56 -2.22 16 13 C -0.05 -0.94 4.64 -104.91 -0.49 -1.42 16 14 C -0.11 -1.98 9.44 -39.24 -0.37 -2.35 16 15 C -0.12 -2.15 10.03 -39.63 -0.40 -2.55 16 16 C -0.11 -2.29 9.69 -39.52 -0.38 -2.67 16 17 C -0.03 -0.67 5.06 -104.67 -0.53 -1.20 16 18 C 0.01 0.36 4.17 -29.03 -0.12 0.23 16 19 C -0.51 -14.89 9.65 -34.44 -0.33 -15.22 16 20 H 0.07 2.36 7.98 -52.49 -0.42 1.94 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 23 Si 0.88 21.83 27.46 -169.99 -4.67 17.17 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.26 -6.31 6.55 56.52 0.37 -5.94 16 27 C -0.10 -2.04 9.21 -39.24 -0.36 -2.40 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 36 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 37 H 0.13 1.11 6.29 -52.49 -0.33 0.78 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 44 H 0.03 0.70 7.15 -51.93 -0.37 0.33 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -32.75 387.93 -10.25 -43.00 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.97 Total: 0.25 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -5.09 Total: -32.55 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 0.77 Total: -27.24 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.18 Total: -4.45 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.75 -10.25 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243272034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.378 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds