Wall clock time and date at job start Tue Mar 31 2020 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46872 * 2 1 4 4 C 1.52999 * 109.46872 * 180.02562 * 3 2 1 5 5 O 1.42909 * 109.46993 * 179.97438 * 4 3 2 6 6 C 1.35841 * 116.99471 * 179.97438 * 5 4 3 7 7 C 1.38586 * 120.11126 * 0.23048 * 6 5 4 8 8 C 1.38203 * 120.11435 * 180.28196 * 7 6 5 9 9 C 1.38339 * 120.32782 * 359.73718 * 8 7 6 10 10 C 1.38245 * 120.21623 * 0.02562 * 9 8 7 11 11 F 1.35102 * 120.06281 * 180.02562 * 10 9 8 12 12 C 1.39520 * 119.87768 * 359.97438 * 10 9 8 13 13 C 1.48311 * 120.16036 * 179.97438 * 12 10 9 14 14 C 1.39389 * 120.12097 * 244.97320 * 13 12 10 15 15 C 1.37993 * 119.87290 * 180.02562 * 14 13 12 16 16 C 1.38346 * 120.12343 * 359.74307 * 15 14 13 17 17 C 1.38307 * 120.25061 * 0.51652 * 16 15 14 18 18 C 1.50703 * 119.93864 * 179.76202 * 17 16 15 19 19 C 1.50701 * 109.47151 * 269.72594 * 18 17 16 20 20 H 1.08002 * 119.99761 * 359.97438 * 19 18 17 21 21 C 1.37871 * 119.99694 * 180.27762 * 19 18 17 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.38033 * 120.12471 * 359.48156 * 17 16 15 28 28 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47566 * 300.00030 * 1 2 3 30 30 H 1.09004 * 109.47348 * 60.00252 * 1 2 3 31 31 H 1.09002 * 109.46897 * 239.99832 * 2 1 3 32 32 H 1.08996 * 109.46530 * 119.99883 * 2 1 3 33 33 H 1.08997 * 109.47570 * 59.99725 * 3 2 1 34 34 H 1.09006 * 109.47254 * 299.99307 * 3 2 1 35 35 H 1.08996 * 109.47566 * 59.99970 * 4 3 2 36 36 H 1.09004 * 109.47348 * 299.99748 * 4 3 2 37 37 H 1.07991 * 119.94259 * 0.04083 * 7 6 5 38 38 H 1.08002 * 119.83374 * 179.72422 * 8 7 6 39 39 H 1.08001 * 119.89086 * 180.02562 * 9 8 7 40 40 H 1.08004 * 120.06754 * 0.04324 * 14 13 12 41 41 H 1.07995 * 119.93979 * 180.02562 * 15 14 13 42 42 H 1.08001 * 119.87595 * 180.25248 * 16 15 14 43 43 H 1.09000 * 109.47088 * 149.71733 * 18 17 16 44 44 H 1.09007 * 109.46560 * 29.72239 * 18 17 16 45 45 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.06093 * 180.27750 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 8 4.0463 2.7899 -0.0012 6 6 5.3930 2.9678 -0.0013 7 6 6.2392 1.8703 -0.0057 8 6 7.6094 2.0512 0.0001 9 6 8.1456 3.3264 0.0048 10 6 7.3141 4.4308 0.0043 11 9 7.8411 5.6748 0.0083 12 6 5.9296 4.2584 -0.0016 13 6 5.0317 5.4388 -0.0016 14 6 4.1980 5.6836 1.0883 15 6 3.3642 6.7831 1.0826 16 6 3.3586 7.6446 0.0002 17 6 4.1798 7.4037 -1.0864 18 6 4.1640 8.3438 -2.2641 19 6 3.1368 7.8792 -3.2641 20 1 2.5540 6.9916 -3.0667 21 6 2.9455 8.5836 -4.4337 22 7 2.0529 8.1750 -5.3089 23 14 3.9540 10.1184 -4.7753 24 1 5.1971 9.7437 -5.4962 25 1 3.1611 11.0561 -5.6104 26 1 4.3057 10.7757 -3.4909 27 6 5.0179 6.3070 -1.0916 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 5.8273 0.8720 -0.0096 38 1 8.2647 1.1927 0.0012 39 1 9.2174 3.4596 0.0089 40 1 4.2048 5.0142 1.9359 41 1 2.7182 6.9740 1.9267 42 1 2.7074 8.5062 0.0017 43 1 5.1481 8.3556 -2.7327 44 1 3.9116 9.3482 -1.9238 45 1 1.9180 8.6708 -6.1316 46 1 5.6620 6.1223 -1.9386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243272034.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:21 Heat of formation + Delta-G solvation = -72.345207 kcal Electronic energy + Delta-G solvation = -27173.030556 eV Core-core repulsion = 23326.713178 eV Total energy + Delta-G solvation = -3846.317378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.94794 -41.34096 -39.95027 -38.38274 -35.99069 -35.53343 -33.90355 -32.93262 -31.08153 -30.47781 -29.72262 -29.16197 -25.23538 -24.94245 -24.49688 -23.03216 -22.56850 -22.02565 -21.28223 -19.37337 -19.00792 -17.77977 -17.66213 -17.39189 -16.99778 -16.84378 -16.65898 -16.34106 -15.97363 -15.58997 -15.58113 -15.46083 -14.80775 -14.49450 -14.33912 -14.17222 -13.94699 -13.78481 -13.56302 -13.54187 -13.34468 -12.94792 -12.74797 -12.73600 -12.60431 -12.44847 -12.06182 -11.96931 -11.93361 -11.82329 -11.77494 -11.65575 -11.50309 -11.45645 -10.82292 -10.05136 -9.58071 -9.42264 -9.14066 -8.33334 -6.38640 -0.06155 0.23018 0.56779 0.61005 1.33238 1.34655 1.47328 2.05347 2.32302 2.53071 2.90709 3.00422 3.31964 3.53861 3.82485 3.91009 3.98954 4.02808 4.03940 4.11865 4.14131 4.20990 4.28613 4.34852 4.36467 4.41054 4.59023 4.62447 4.68930 4.78805 4.83848 4.91410 4.97071 5.00343 5.01772 5.09418 5.11556 5.21218 5.22291 5.27804 5.31046 5.31270 5.42908 5.52489 5.58121 5.61615 5.73726 5.93964 6.12101 6.25366 6.40001 6.66538 7.24568 8.83483 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.003879 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.162595 B = 7217.059377 C = 9062.418366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.052 3.948 5 O -0.326 6.326 6 C 0.159 3.841 7 C -0.214 4.214 8 C -0.038 4.038 9 C -0.190 4.190 10 C 0.123 3.877 11 F -0.144 7.144 12 C -0.142 4.142 13 C -0.044 4.044 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.132 4.132 17 C -0.061 4.061 18 C 0.022 3.978 19 C -0.521 4.521 20 H 0.025 0.975 21 C 0.010 3.990 22 N -0.948 5.948 23 Si 0.950 3.050 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.246 1.246 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.166 0.834 38 H 0.179 0.821 39 H 0.161 0.839 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.124 0.876 43 H 0.023 0.977 44 H 0.035 0.965 45 H 0.269 0.731 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.272 -18.881 16.387 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.159 4.159 4 C -0.022 4.022 5 O -0.240 6.240 6 C 0.113 3.887 7 C -0.233 4.233 8 C -0.056 4.056 9 C -0.209 4.209 10 C 0.104 3.896 11 F -0.123 7.123 12 C -0.143 4.143 13 C -0.044 4.044 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.150 4.150 17 C -0.061 4.061 18 C -0.015 4.015 19 C -0.558 4.558 20 H 0.043 0.957 21 C -0.187 4.187 22 N -0.588 5.588 23 Si 0.773 3.227 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.170 1.170 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.183 0.817 38 H 0.197 0.803 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.170 0.830 42 H 0.142 0.858 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.035 -18.659 16.223 25.998 hybrid contribution -0.011 1.091 -0.985 1.470 sum 8.024 -17.568 15.238 24.601 Atomic orbital electron populations 1.21784 0.95395 1.02404 1.01721 1.21394 0.96279 0.93944 1.03380 1.21607 0.92521 0.99067 1.02736 1.23166 0.95617 0.80378 1.03010 1.86157 1.18520 1.31582 1.87692 1.18816 0.83408 0.92272 0.94222 1.21608 0.94440 0.98426 1.08823 1.21286 0.94385 0.97021 0.92882 1.21311 1.01169 0.91105 1.07304 1.17767 0.90114 0.80277 1.01426 1.91481 1.86455 1.40625 1.93707 1.18196 0.91712 0.92029 1.12382 1.18499 0.97463 0.93729 0.94734 1.21167 0.96275 0.97965 0.97708 1.21290 0.99022 0.94246 0.98522 1.21254 0.99039 1.00969 0.93734 1.20072 0.94887 0.95840 0.95313 1.18648 0.96175 0.94830 0.91854 1.21114 1.20266 1.11332 1.03133 0.95683 1.25965 0.96239 1.01221 0.95266 1.70056 1.36144 1.42040 1.10544 0.85659 0.78750 0.78891 0.79426 1.19157 1.20259 1.16974 1.20983 1.00142 0.95230 0.97536 0.91194 0.92615 0.93637 0.91051 0.89940 0.91271 0.93079 0.90844 0.89266 0.81667 0.80326 0.82176 0.84677 0.83015 0.85821 0.95887 0.94678 0.92246 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.11 -1.49 5.93 30.59 0.18 -1.31 16 3 C -0.12 -2.32 5.58 30.59 0.17 -2.15 16 4 C 0.05 0.97 4.74 71.98 0.34 1.31 16 5 O -0.33 -9.29 9.33 -91.77 -0.86 -10.15 16 6 C 0.16 4.36 6.65 22.72 0.15 4.51 16 7 C -0.21 -3.96 9.03 22.34 0.20 -3.76 16 8 C -0.04 -0.59 10.03 22.29 0.22 -0.37 16 9 C -0.19 -3.91 10.01 22.30 0.22 -3.69 16 10 C 0.12 3.66 7.24 22.58 0.16 3.82 16 11 F -0.14 -4.84 16.67 44.97 0.75 -4.09 16 12 C -0.14 -4.63 5.33 -19.92 -0.11 -4.74 16 13 C -0.04 -1.70 4.64 -20.05 -0.09 -1.79 16 14 C -0.11 -3.89 9.44 22.49 0.21 -3.68 16 15 C -0.11 -3.86 10.03 22.24 0.22 -3.64 16 16 C -0.13 -5.41 9.69 22.31 0.22 -5.20 16 17 C -0.06 -2.88 5.06 -19.90 -0.10 -2.98 16 18 C 0.02 1.15 4.17 29.10 0.12 1.27 16 19 C -0.52 -32.07 9.65 25.60 0.25 -31.82 16 20 H 0.02 1.72 7.98 -2.91 -0.02 1.70 16 21 C 0.01 0.62 5.47 84.65 0.46 1.08 16 22 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 23 Si 0.95 45.80 27.46 68.60 1.88 47.68 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.25 -11.08 6.55 99.48 0.65 -10.42 16 27 C -0.12 -5.42 9.21 22.49 0.21 -5.22 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.07 1.19 7.65 -2.39 -0.02 1.17 16 36 H 0.09 1.14 7.67 -2.39 -0.02 1.13 16 37 H 0.17 1.92 6.29 -2.92 -0.02 1.90 16 38 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 42 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.02 1.17 7.50 -2.39 -0.02 1.15 16 44 H 0.03 1.74 7.15 -2.38 -0.02 1.73 16 45 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 46 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -77.12 387.93 6.74 -70.38 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.90 Total: 16.94 kcal Atomic # 6 Polarization: -63.58 SS G_CDS: 3.76 Total: -59.82 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.30 Total: -60.95 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.86 Total: -10.15 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.75 Total: -4.09 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -77.12 6.74 -70.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243272034.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.967 kcal (2) G-P(sol) polarization free energy of solvation -77.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds