Wall clock time and date at job start Tue Mar 31 2020 14:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47323 * 135.87702 * 359.63116 * 8 6 5 10 10 C 1.52416 * 87.49471 * 154.12715 * 9 8 6 11 11 C 1.47332 * 135.88103 * 180.02562 * 8 6 5 12 12 C 1.52428 * 117.40020 * 267.39081 * 10 9 8 13 13 C 1.53329 * 112.04922 * 226.41056 * 12 10 9 14 14 H 1.09000 * 109.58964 * 269.84552 * 13 12 10 15 15 N 1.46906 * 109.58964 * 149.75353 * 13 12 10 16 16 C 1.46900 * 110.99832 * 154.99694 * 15 13 12 17 17 C 1.50698 * 109.47168 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00303 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00397 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46893 * 89.99814 * 21 19 17 23 23 H 1.48496 * 109.47145 * 210.00318 * 21 19 17 24 24 H 1.48503 * 109.46707 * 329.99919 * 21 19 17 25 25 C 1.55272 * 109.03115 * 29.80457 * 13 12 10 26 26 S 1.82508 * 115.42656 * 141.19320 * 10 9 8 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 36 36 H 1.09002 * 113.53113 * 268.75985 * 9 8 6 37 37 H 1.09001 * 113.53436 * 39.39472 * 9 8 6 38 38 H 1.08999 * 113.52972 * 320.59679 * 11 8 6 39 39 H 1.08997 * 113.53345 * 91.24087 * 11 8 6 40 40 H 1.09002 * 108.96743 * 347.08702 * 12 10 9 41 41 H 1.08990 * 108.97697 * 105.72436 * 12 10 9 42 42 H 1.00905 * 110.99905 * 278.94863 * 15 13 12 43 43 H 1.09000 * 109.47328 * 300.00075 * 16 15 13 44 44 H 1.09010 * 109.47297 * 60.00134 * 16 15 13 45 45 H 0.96993 * 119.99880 * 180.02562 * 20 19 17 46 46 H 1.08991 * 111.11572 * 77.02333 * 25 13 12 47 47 H 1.08997 * 111.11078 * 201.11801 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.9006 -1.9247 -3.8639 10 6 2.1314 -1.9990 -5.1776 11 6 1.8938 -0.5122 -4.9589 12 6 0.9042 -2.9020 -5.2218 13 6 0.8831 -3.7835 -6.4762 14 1 0.3572 -3.2654 -7.2782 15 7 0.1964 -5.0476 -6.1784 16 6 -0.3659 -5.6414 -7.3987 17 6 -1.0603 -6.9338 -7.0546 18 1 -1.0813 -7.2797 -6.0317 19 6 -1.6677 -7.6752 -8.0457 20 7 -2.2733 -8.8034 -7.7455 21 14 -1.6294 -7.0780 -9.8153 22 1 -0.4242 -7.6183 -10.4940 23 1 -2.8480 -7.5471 -10.5225 24 1 -1.5856 -5.5938 -9.8359 25 6 2.3438 -4.0752 -6.9147 26 16 3.1270 -2.4300 -6.6452 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 1.6767 -0.2075 2.1392 36 1 3.9559 -1.6831 -3.9905 37 1 2.7387 -2.7845 -3.2137 38 1 0.8880 -0.1883 -5.2263 39 1 2.6703 0.1205 -5.3888 40 1 0.9029 -3.5415 -4.3391 41 1 0.0076 -2.2824 -5.2089 42 1 0.8156 -5.6946 -5.7136 43 1 -1.0827 -4.9502 -7.8422 44 1 0.4364 -5.8386 -8.1099 45 1 -2.7003 -9.3251 -8.4428 46 1 2.7996 -4.8356 -6.2807 47 1 2.3881 -4.3646 -7.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254680706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:15 Heat of formation + Delta-G solvation = -34.935255 kcal Electronic energy + Delta-G solvation = -26194.694385 eV Core-core repulsion = 22505.363137 eV Total energy + Delta-G solvation = -3689.331248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18120 -39.87684 -37.13624 -36.55700 -34.28511 -33.16900 -31.64366 -29.68536 -27.68865 -27.62300 -26.92694 -26.65863 -26.56164 -22.89712 -21.66894 -21.10033 -20.20251 -19.20720 -18.15039 -17.18429 -16.89932 -16.69546 -15.96459 -15.75458 -15.35852 -15.04085 -14.76562 -14.54920 -14.19112 -14.14895 -13.65605 -13.51538 -13.42912 -12.81106 -12.71685 -12.66436 -12.42505 -12.30442 -12.18266 -12.14924 -12.10723 -11.82330 -11.68645 -11.63205 -11.52094 -11.32105 -10.83284 -10.66557 -10.60176 -10.53018 -10.30128 -10.05610 -9.86279 -9.40443 -9.09675 -8.68980 -7.96521 -7.63528 -6.13971 -4.13211 1.34695 1.97757 2.16499 2.69053 3.22187 3.30934 3.31917 3.51664 3.79344 4.15596 4.34286 4.44424 4.49122 4.55873 4.63132 4.78106 4.87269 4.93097 5.12055 5.16693 5.18152 5.19271 5.23791 5.27355 5.30867 5.33772 5.41030 5.47886 5.54948 5.58175 5.59723 5.61941 5.70808 5.72878 6.01403 6.08240 6.09486 6.12583 6.27112 6.61749 6.86208 7.41165 7.45837 7.71075 8.10262 8.11746 8.52180 8.93154 9.46925 10.99115 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002614 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.382506 B =10708.000457 C =11691.843037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.183 4.183 4 C -0.140 4.140 5 O -0.360 6.360 6 C 0.685 3.315 7 O -0.566 6.566 8 N -0.632 5.632 9 C 0.127 3.873 10 C -0.056 4.056 11 C 0.158 3.842 12 C -0.094 4.094 13 C 0.086 3.914 14 H 0.089 0.911 15 N -0.666 5.666 16 C 0.164 3.836 17 C -0.520 4.520 18 H 0.079 0.921 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.096 4.096 26 S -0.261 6.261 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.340 0.660 43 H 0.028 0.972 44 H -0.017 1.017 45 H 0.265 0.735 46 H 0.094 0.906 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 18.256 12.564 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.240 4.240 4 C -0.198 4.198 5 O -0.275 6.275 6 C 0.441 3.559 7 O -0.456 6.456 8 N -0.376 5.376 9 C 0.002 3.998 10 C -0.167 4.167 11 C 0.035 3.965 12 C -0.133 4.133 13 C -0.027 4.027 14 H 0.108 0.892 15 N -0.296 5.296 16 C 0.037 3.963 17 C -0.558 4.558 18 H 0.097 0.903 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.246 4.246 26 S -0.031 6.031 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.158 0.842 43 H 0.046 0.954 44 H 0.000 1.000 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.355 19.389 12.316 26.082 hybrid contribution -0.050 -0.741 -0.816 1.104 sum 12.305 18.648 11.500 25.128 Atomic orbital electron populations 1.22530 0.93825 1.03231 1.04586 1.22103 0.94546 0.92124 0.81336 1.22515 1.01468 0.95438 1.04592 1.21860 1.02181 1.01316 0.94408 1.86318 1.71302 1.56467 1.13374 1.17212 0.78579 0.80268 0.79869 1.90907 1.41664 1.26546 1.86434 1.48228 1.53471 1.32142 1.03717 1.23300 0.95606 0.88630 0.92266 1.24100 0.98616 0.98770 0.95222 1.22850 1.03864 0.93925 0.75857 1.21531 0.94830 0.96812 1.00097 1.22605 0.90136 0.93874 0.96088 0.89240 1.60562 1.37027 1.04655 1.27405 1.20073 0.93787 0.95620 0.86843 1.21012 1.34496 1.03435 0.96877 0.90255 1.24904 0.94813 0.94658 0.98857 1.69892 1.36151 1.14030 1.33537 0.86833 0.77827 0.79641 0.85258 1.20281 1.21068 1.19103 1.25434 0.98652 0.94586 1.05976 1.87554 1.53712 1.24722 1.37155 0.89385 0.91912 0.91118 0.91082 0.92249 0.89462 0.91285 0.91522 0.90093 0.88457 0.89050 0.88742 0.88663 0.89579 0.89631 0.84158 0.95364 0.99972 0.92528 0.88732 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 2 C 0.14 1.32 1.13 -90.62 -0.10 1.22 16 3 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 4 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 5 O -0.36 -4.36 9.91 -40.29 -0.40 -4.76 16 6 C 0.68 9.09 8.26 54.06 0.45 9.53 16 7 O -0.57 -8.55 12.65 -19.28 -0.24 -8.79 16 8 N -0.63 -7.30 3.69 -191.08 -0.71 -8.01 16 9 C 0.13 1.24 8.02 -7.44 -0.06 1.18 16 10 C -0.06 -0.59 1.45 -91.66 -0.13 -0.72 16 11 C 0.16 1.62 7.95 -7.57 -0.06 1.56 16 12 C -0.09 -1.16 5.71 -26.85 -0.15 -1.31 16 13 C 0.09 1.24 2.86 -66.34 -0.19 1.05 16 14 H 0.09 1.37 7.79 -51.93 -0.40 0.97 16 15 N -0.67 -12.23 6.18 -106.53 -0.66 -12.89 16 16 C 0.16 3.69 4.31 -4.98 -0.02 3.67 16 17 C -0.52 -14.22 9.87 -34.44 -0.34 -14.56 16 18 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 21 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 25 C -0.10 -1.23 6.86 38.36 0.26 -0.96 16 26 S -0.26 -3.00 22.63 -107.50 -2.43 -5.43 16 27 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 38 H 0.09 0.98 7.92 -51.93 -0.41 0.57 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 41 H 0.09 1.10 7.76 -51.93 -0.40 0.70 16 42 H 0.34 5.97 8.32 -39.29 -0.33 5.65 16 43 H 0.03 0.66 7.11 -51.93 -0.37 0.29 16 44 H -0.02 -0.38 7.47 -51.92 -0.39 -0.77 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 47 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 384.16 15.07 5.79 5.79 Total: -1.00 -30.97 384.16 -9.99 -40.96 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.95 Total: 4.10 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 0.50 Total: -1.01 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.59 Total: -47.06 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.64 Total: -13.55 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.43 Total: -5.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.97 -9.99 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254680706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.030 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds