Wall clock time and date at job start Tue Mar 31 2020 14:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47323 * 135.87702 * 359.63116 * 8 6 5 10 10 C 1.52416 * 87.49471 * 154.12715 * 9 8 6 11 11 C 1.47332 * 135.88103 * 180.02562 * 8 6 5 12 12 C 1.52428 * 117.40020 * 267.39081 * 10 9 8 13 13 C 1.53329 * 112.04922 * 226.41056 * 12 10 9 14 14 H 1.09000 * 109.58964 * 269.84552 * 13 12 10 15 15 N 1.46906 * 109.58964 * 149.75353 * 13 12 10 16 16 C 1.46900 * 110.99832 * 154.99694 * 15 13 12 17 17 C 1.50698 * 109.47168 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99728 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00303 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00397 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46893 * 89.99814 * 21 19 17 23 23 H 1.48496 * 109.47145 * 210.00318 * 21 19 17 24 24 H 1.48503 * 109.46707 * 329.99919 * 21 19 17 25 25 C 1.55272 * 109.03115 * 29.80457 * 13 12 10 26 26 S 1.82508 * 115.42656 * 141.19320 * 10 9 8 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 33 33 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 34 34 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 36 36 H 1.09002 * 113.53113 * 268.75985 * 9 8 6 37 37 H 1.09001 * 113.53436 * 39.39472 * 9 8 6 38 38 H 1.08999 * 113.52972 * 320.59679 * 11 8 6 39 39 H 1.08997 * 113.53345 * 91.24087 * 11 8 6 40 40 H 1.09002 * 108.96743 * 347.08702 * 12 10 9 41 41 H 1.08990 * 108.97697 * 105.72436 * 12 10 9 42 42 H 1.00905 * 110.99905 * 278.94863 * 15 13 12 43 43 H 1.09000 * 109.47328 * 300.00075 * 16 15 13 44 44 H 1.09010 * 109.47297 * 60.00134 * 16 15 13 45 45 H 0.96993 * 119.99880 * 180.02562 * 20 19 17 46 46 H 1.08991 * 111.11572 * 77.02333 * 25 13 12 47 47 H 1.08997 * 111.11078 * 201.11801 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.9006 -1.9247 -3.8639 10 6 2.1314 -1.9990 -5.1776 11 6 1.8938 -0.5122 -4.9589 12 6 0.9042 -2.9020 -5.2218 13 6 0.8831 -3.7835 -6.4762 14 1 0.3572 -3.2654 -7.2782 15 7 0.1964 -5.0476 -6.1784 16 6 -0.3659 -5.6414 -7.3987 17 6 -1.0603 -6.9338 -7.0546 18 1 -1.0813 -7.2797 -6.0317 19 6 -1.6677 -7.6752 -8.0457 20 7 -2.2733 -8.8034 -7.7455 21 14 -1.6294 -7.0780 -9.8153 22 1 -0.4242 -7.6183 -10.4940 23 1 -2.8480 -7.5471 -10.5225 24 1 -1.5856 -5.5938 -9.8359 25 6 2.3438 -4.0752 -6.9147 26 16 3.1270 -2.4300 -6.6452 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2493 35 1 1.6767 -0.2075 2.1392 36 1 3.9559 -1.6831 -3.9905 37 1 2.7387 -2.7845 -3.2137 38 1 0.8880 -0.1883 -5.2263 39 1 2.6703 0.1205 -5.3888 40 1 0.9029 -3.5415 -4.3391 41 1 0.0076 -2.2824 -5.2089 42 1 0.8156 -5.6946 -5.7136 43 1 -1.0827 -4.9502 -7.8422 44 1 0.4364 -5.8386 -8.1099 45 1 -2.7003 -9.3251 -8.4428 46 1 2.7996 -4.8356 -6.2807 47 1 2.3881 -4.3646 -7.9646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254680706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:14 Heat of formation + Delta-G solvation = -55.092709 kcal Electronic energy + Delta-G solvation = -26195.568478 eV Core-core repulsion = 22505.363137 eV Total energy + Delta-G solvation = -3690.205341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.08669 -40.76168 -38.34531 -37.61144 -35.17526 -34.95701 -33.18564 -30.85631 -28.41083 -28.37325 -28.30861 -27.89849 -27.40994 -24.03249 -23.21700 -22.32910 -21.15428 -20.10600 -19.09178 -18.91200 -17.88706 -17.76614 -17.04085 -16.90053 -16.42392 -16.11264 -15.94669 -15.82552 -15.32653 -15.08859 -14.91617 -14.57921 -14.44424 -14.28308 -13.93140 -13.80503 -13.35662 -13.30806 -13.12473 -12.97583 -12.92481 -12.89676 -12.87907 -12.57652 -12.50203 -12.45654 -12.19485 -12.13312 -11.81170 -11.70047 -11.48440 -11.41712 -11.26195 -11.00123 -10.81056 -9.99729 -9.24869 -8.75062 -8.29944 -6.34610 0.43898 1.05204 1.22455 1.35430 1.38143 1.48290 1.72046 2.33986 2.69285 2.92440 3.04656 3.09063 3.55048 3.69469 3.74801 3.78702 3.87073 3.93528 4.02951 4.08683 4.22295 4.35376 4.41003 4.49859 4.53636 4.60292 4.60997 4.62872 4.72834 4.75763 4.79148 4.81763 4.86568 4.87107 4.95710 5.03412 5.11987 5.12568 5.27098 5.31605 5.44110 5.52441 5.91228 6.49433 6.50743 6.60882 6.75391 7.16272 7.30424 8.86695 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017024 B = 0.002614 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.382506 B =10708.000457 C =11691.843037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.177 4.177 4 C -0.135 4.135 5 O -0.366 6.366 6 C 0.678 3.322 7 O -0.591 6.591 8 N -0.637 5.637 9 C 0.133 3.867 10 C -0.049 4.049 11 C 0.157 3.843 12 C -0.086 4.086 13 C 0.088 3.912 14 H 0.083 0.917 15 N -0.676 5.676 16 C 0.176 3.824 17 C -0.527 4.527 18 H 0.038 0.962 19 C 0.008 3.992 20 N -0.948 5.948 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.248 1.248 25 C -0.097 4.097 26 S -0.241 6.241 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.343 0.657 43 H 0.024 0.976 44 H -0.006 1.006 45 H 0.267 0.733 46 H 0.102 0.898 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.263 19.849 12.377 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.234 4.234 4 C -0.192 4.192 5 O -0.281 6.281 6 C 0.434 3.566 7 O -0.483 6.483 8 N -0.380 5.380 9 C 0.008 3.992 10 C -0.160 4.160 11 C 0.035 3.965 12 C -0.125 4.125 13 C -0.024 4.024 14 H 0.101 0.899 15 N -0.307 5.307 16 C 0.048 3.952 17 C -0.566 4.566 18 H 0.056 0.944 19 C -0.190 4.190 20 N -0.588 5.588 21 Si 0.772 3.228 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.171 1.171 25 C -0.247 4.247 26 S -0.011 6.011 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.162 0.838 43 H 0.042 0.958 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.120 0.880 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.159 20.996 12.141 28.083 hybrid contribution -0.603 -1.224 -0.633 1.505 sum 13.556 19.771 11.507 26.591 Atomic orbital electron populations 1.22490 0.94214 1.02783 1.04340 1.22468 0.94473 0.92868 0.81463 1.22456 1.01688 0.94962 1.04342 1.21885 1.02509 1.01115 0.93717 1.86325 1.71351 1.56831 1.13589 1.17411 0.78499 0.80195 0.80465 1.90895 1.42785 1.27710 1.86877 1.48344 1.53428 1.32487 1.03751 1.23408 0.96178 0.88198 0.91386 1.23937 0.97813 0.98607 0.95661 1.22962 1.04395 0.93791 0.75371 1.21384 0.95671 0.96618 0.98861 1.22609 0.90974 0.91968 0.96869 0.89889 1.60405 1.38535 1.05863 1.25868 1.19780 0.93711 0.93202 0.88514 1.21334 1.34679 1.05444 0.95119 0.94373 1.25872 0.94384 0.94677 1.04043 1.70052 1.37738 1.15766 1.35270 0.85695 0.78120 0.80067 0.78929 1.18942 1.21074 1.17146 1.25293 0.97464 0.95918 1.06043 1.87531 1.53117 1.23310 1.37185 0.92108 0.92395 0.88834 0.88877 0.91768 0.92102 0.91546 0.91000 0.87754 0.86557 0.88635 0.89061 0.86955 0.90028 0.90248 0.83795 0.95758 0.98795 0.92405 0.87967 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.28 1.13 -10.79 -0.01 2.27 16 3 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 4 C -0.14 -1.65 8.85 71.98 0.64 -1.01 16 5 O -0.37 -8.62 9.91 -55.38 -0.55 -9.17 16 6 C 0.68 17.76 8.26 129.79 1.07 18.84 16 7 O -0.59 -18.10 12.65 19.80 0.25 -17.85 16 8 N -0.64 -13.96 3.69 -988.86 -3.65 -17.62 16 9 C 0.13 2.30 8.02 83.73 0.67 2.97 16 10 C -0.05 -0.94 1.45 -11.45 -0.02 -0.95 16 11 C 0.16 2.98 7.95 83.64 0.67 3.64 16 12 C -0.09 -2.04 5.71 30.52 0.17 -1.87 16 13 C 0.09 2.43 2.86 45.80 0.13 2.56 16 14 H 0.08 2.43 7.79 -2.39 -0.02 2.41 16 15 N -0.68 -24.56 6.18 -490.96 -3.03 -27.59 16 16 C 0.18 7.80 4.31 85.56 0.37 8.17 16 17 C -0.53 -29.40 9.87 25.60 0.25 -29.14 16 18 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 19 C 0.01 0.45 5.47 84.65 0.46 0.91 16 20 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 21 Si 0.95 42.67 27.47 68.60 1.88 44.55 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.25 -10.32 6.54 99.48 0.65 -9.67 16 25 C -0.10 -2.28 6.86 72.76 0.50 -1.78 16 26 S -0.24 -4.92 22.63 -56.49 -1.28 -6.20 16 27 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.40 5.88 -2.39 -0.01 1.38 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 38 H 0.09 1.81 7.92 -2.39 -0.02 1.79 16 39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 2.03 7.68 -2.39 -0.02 2.01 16 41 H 0.08 2.00 7.76 -2.39 -0.02 1.98 16 42 H 0.34 12.02 8.32 -89.69 -0.75 11.27 16 43 H 0.02 1.10 7.11 -2.39 -0.02 1.09 16 44 H -0.01 -0.24 7.47 -2.38 -0.02 -0.25 16 45 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.10 2.26 7.89 -2.39 -0.02 2.24 16 47 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -68.40 384.16 0.19 -68.22 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.16 Total: 24.38 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.11 Total: -0.71 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -6.39 Total: -103.22 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.30 Total: -27.02 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.28 Total: -6.20 kcal Total: -68.40 0.19 -68.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254680706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.123 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds