Wall clock time and date at job start Tue Mar 31 2020 14:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00215 * 2 1 4 4 H 1.07995 * 120.00438 * 162.65897 * 3 2 1 5 5 C 1.38814 * 119.99781 * 342.94146 * 3 2 1 6 6 N 1.31626 * 119.99829 * 347.45926 * 5 3 2 7 7 Si 1.86796 * 120.00160 * 167.46169 * 5 3 2 8 8 H 1.48500 * 109.47072 * 59.99428 * 7 5 3 9 9 H 1.48498 * 109.47075 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47197 * 299.99875 * 7 5 3 11 11 C 1.46498 * 120.00317 * 179.97438 * 2 1 3 12 12 H 1.08994 * 109.59371 * 178.84739 * 11 2 1 13 13 C 1.55258 * 109.58952 * 58.54630 * 11 2 1 14 14 S 1.84165 * 100.99561 * 199.07721 * 13 11 2 15 15 C 1.82609 * 95.58474 * 34.80158 * 14 13 11 16 16 C 1.52727 * 115.07302 * 210.33975 * 15 14 13 17 17 N 1.47822 * 85.70485 * 220.44692 * 16 15 14 18 18 C 1.34778 * 134.36954 * 203.72570 * 17 16 15 19 19 O 1.21511 * 120.00631 * 180.02562 * 18 17 16 20 20 O 1.34641 * 119.99547 * 359.97438 * 18 17 16 21 21 C 1.45201 * 116.99703 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47231 * 60.00428 * 21 20 18 23 23 C 1.53006 * 109.46992 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47258 * 299.99934 * 21 20 18 25 25 C 1.47830 * 91.27066 * 23.72863 * 17 16 15 26 26 C 1.52586 * 105.88408 * 340.56188 * 15 14 13 27 27 H 1.09002 * 109.46809 * 84.87709 * 1 2 3 28 28 H 1.08994 * 109.46962 * 204.88116 * 1 2 3 29 29 H 1.09003 * 109.47025 * 324.87850 * 1 2 3 30 30 H 0.96994 * 119.99512 * 179.97438 * 6 5 3 31 31 H 1.09000 * 111.11925 * 317.01578 * 13 11 2 32 32 H 1.09001 * 111.11547 * 81.15095 * 13 11 2 33 33 H 1.08996 * 113.83338 * 334.64261 * 16 15 14 34 34 H 1.09004 * 113.83519 * 106.25206 * 16 15 14 35 35 H 1.09002 * 109.46942 * 59.99592 * 22 21 20 36 36 H 1.09002 * 109.47315 * 179.97438 * 22 21 20 37 37 H 1.09006 * 109.47084 * 299.99680 * 22 21 20 38 38 H 1.09004 * 109.46420 * 60.00010 * 23 21 20 39 39 H 1.08992 * 109.47241 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.46926 * 300.00450 * 23 21 20 41 41 H 1.09006 * 109.46931 * 60.00397 * 24 21 20 42 42 H 1.09002 * 109.47039 * 180.02562 * 24 21 20 43 43 H 1.08991 * 109.47393 * 300.00376 * 24 21 20 44 44 H 1.08999 * 113.83474 * 222.08076 * 25 17 16 45 45 H 1.08998 * 113.83589 * 90.46400 * 25 17 16 46 46 H 1.08996 * 108.96826 * 236.41023 * 26 15 14 47 47 H 1.09001 * 108.96150 * 117.79977 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1929 1.2072 0.2788 5 6 1.5015 2.3617 -0.3527 6 7 0.3146 2.3141 -0.9197 7 14 2.3135 4.0112 -0.0226 8 1 3.6056 4.0814 -0.7512 9 1 1.4220 5.1037 -0.4882 10 1 2.5583 4.1597 1.4346 11 6 2.1976 -1.2687 0.0006 12 1 3.2694 -1.0719 -0.0202 13 6 1.7969 -2.1017 -1.2468 14 16 2.3335 -3.7863 -0.7314 15 6 1.9268 -3.5695 1.0356 16 6 2.8030 -4.3622 2.0034 17 7 1.5530 -4.6203 2.7489 18 6 1.2661 -4.9348 4.0277 19 8 0.1111 -5.0939 4.3699 20 8 2.2595 -5.0735 4.9259 21 6 1.8768 -5.4124 6.2849 22 6 1.1315 -6.7486 6.2867 23 6 3.1307 -5.5274 7.1542 24 6 0.9653 -4.3191 6.8458 25 6 0.7427 -4.3963 1.5329 26 6 1.8492 -2.0629 1.2644 27 1 -0.3633 0.0918 -1.0236 28 1 -0.3633 -0.9322 0.4324 29 1 -0.3633 0.8406 0.5912 30 1 -0.1385 3.1357 -1.1657 31 1 0.7203 -2.0663 -1.4135 32 1 2.3404 -1.7701 -2.1316 33 1 3.2468 -5.2558 1.5647 34 1 3.5224 -3.7506 2.5480 35 1 1.7810 -7.5274 5.8871 36 1 0.8446 -7.0032 7.3070 37 1 0.2382 -6.6672 5.6673 38 1 3.6621 -4.5757 7.1529 39 1 2.8435 -5.7814 8.1745 40 1 3.7798 -6.3065 6.7544 41 1 0.0720 -4.2377 6.2264 42 1 0.6784 -4.5734 7.8662 43 1 1.4963 -3.3673 6.8445 44 1 -0.1606 -3.8117 1.7071 45 1 0.5616 -5.3003 0.9516 46 1 2.5444 -1.7888 2.0578 47 1 0.8379 -1.8039 1.5780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254704316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:26 Heat of formation + Delta-G solvation = -11.490689 kcal Electronic energy + Delta-G solvation = -26913.778730 eV Core-core repulsion = 23225.464115 eV Total energy + Delta-G solvation = -3688.314615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.94533 -39.55883 -36.90642 -36.32873 -34.16817 -33.03287 -30.55202 -29.01877 -27.60770 -27.53893 -26.71938 -26.31409 -26.13169 -23.61823 -22.24536 -20.47345 -19.50473 -18.92560 -17.96075 -17.06739 -16.84448 -16.61951 -15.79876 -15.42375 -15.24734 -14.65257 -14.47521 -14.21241 -14.18727 -13.73649 -13.48977 -13.25841 -12.83692 -12.73673 -12.65291 -12.39111 -12.14901 -12.10976 -12.06249 -11.92391 -11.66984 -11.51770 -11.41074 -11.18982 -11.07747 -10.89370 -10.71179 -10.51436 -10.48893 -10.32791 -10.14808 -10.03176 -9.88279 -9.59526 -8.89050 -8.64878 -7.56902 -6.97139 -5.83329 -3.26492 1.64375 2.24963 2.57137 2.87067 3.33556 3.39509 3.39981 3.63217 4.12910 4.36419 4.53417 4.57664 4.60999 4.71939 4.87339 5.06995 5.26202 5.27126 5.31862 5.34714 5.34935 5.38439 5.48473 5.51488 5.53489 5.57231 5.63965 5.68128 5.70089 5.79210 5.81120 5.93725 6.02037 6.10790 6.17598 6.19460 6.40659 6.50763 6.65484 6.72433 7.33230 7.57431 7.60539 7.72973 8.24399 8.28053 9.10708 9.72610 10.18274 11.21275 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003188 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.641776 B = 8781.980744 C = 9866.426847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.261 4.261 4 H 0.073 0.927 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.909 3.091 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.179 3.821 12 H 0.079 0.921 13 C -0.070 4.070 14 S -0.294 6.294 15 C -0.046 4.046 16 C 0.137 3.863 17 N -0.629 5.629 18 C 0.676 3.324 19 O -0.569 6.569 20 O -0.361 6.361 21 C 0.135 3.865 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.184 4.184 25 C 0.155 3.845 26 C -0.123 4.123 27 H 0.030 0.970 28 H -0.002 1.002 29 H 0.053 0.947 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.911 -16.378 10.524 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.308 5.308 3 C -0.390 4.390 4 H 0.090 0.910 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.068 3.932 12 H 0.098 0.902 13 C -0.220 4.220 14 S -0.065 6.065 15 C -0.157 4.157 16 C 0.013 3.987 17 N -0.372 5.372 18 C 0.432 3.568 19 O -0.459 6.459 20 O -0.276 6.276 21 C 0.098 3.902 22 C -0.240 4.240 23 C -0.197 4.197 24 C -0.241 4.241 25 C 0.032 3.968 26 C -0.164 4.164 27 H 0.048 0.952 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.095 0.905 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.866 -17.226 10.201 20.390 hybrid contribution -0.173 1.790 0.731 1.942 sum 3.693 -15.436 10.932 19.272 Atomic orbital electron populations 1.20868 0.82090 0.95764 0.99642 1.44065 1.02096 0.99834 1.84792 1.19245 0.95441 0.84286 1.40040 0.90962 1.24951 0.97221 0.98372 0.98946 1.70092 1.14959 1.26670 1.43490 0.86272 0.78449 0.83318 0.78128 1.20848 1.21566 1.21022 1.21279 0.97175 0.86407 0.88347 0.90245 1.25362 1.04301 0.88783 1.03556 1.87422 1.85239 1.26528 1.07274 1.24267 0.98485 0.99308 0.93685 1.23169 0.88401 0.98361 0.88787 1.48792 1.11792 1.72020 1.04613 1.17470 0.82939 0.75864 0.80533 1.90892 1.19980 1.56560 1.78454 1.86317 1.37501 1.83317 1.20494 1.22065 0.95743 0.95284 0.77073 1.22513 1.02408 0.95540 1.03515 1.21852 0.96101 1.03315 0.98440 1.22522 1.01542 0.97996 1.02075 1.23459 0.95504 0.98411 0.79414 1.22274 1.04428 0.88196 1.01476 0.95215 0.98370 0.92832 0.93523 0.89256 0.88074 0.88865 0.88754 0.92291 0.91209 0.89403 0.91390 0.90204 0.91548 0.89332 0.91235 0.92027 0.88903 0.88473 0.90521 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 7.61 59.85 0.46 4.18 16 2 N -0.59 -13.60 2.84 -171.95 -0.49 -14.09 16 3 C -0.26 -6.76 9.68 -15.06 -0.15 -6.91 16 4 H 0.07 1.82 7.77 -52.49 -0.41 1.41 16 5 C 0.00 0.10 5.14 -17.43 -0.09 0.01 16 6 N -0.91 -25.32 10.34 55.49 0.57 -24.74 16 7 Si 0.91 21.13 29.57 -169.99 -5.03 16.11 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.18 3.33 2.97 -66.59 -0.20 3.13 16 12 H 0.08 1.51 7.84 -51.93 -0.41 1.10 16 13 C -0.07 -1.17 6.99 38.35 0.27 -0.90 16 14 S -0.29 -4.21 22.59 -107.50 -2.43 -6.64 16 15 C -0.05 -0.62 1.37 -91.29 -0.13 -0.74 16 16 C 0.14 1.63 8.18 -3.46 -0.03 1.60 16 17 N -0.63 -8.59 3.61 -190.95 -0.69 -9.28 16 18 C 0.68 10.13 8.22 54.06 0.44 10.57 16 19 O -0.57 -9.56 12.61 -19.28 -0.24 -9.80 16 20 O -0.36 -4.86 9.87 -40.33 -0.40 -5.26 16 21 C 0.14 1.47 1.13 -90.62 -0.10 1.37 16 22 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 23 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 24 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 25 C 0.16 2.01 8.16 -3.44 -0.03 1.98 16 26 C -0.12 -1.97 5.56 -26.80 -0.15 -2.12 16 27 H 0.03 0.74 7.51 -51.93 -0.39 0.35 16 28 H 0.00 -0.04 6.48 -51.93 -0.34 -0.38 16 29 H 0.05 1.37 6.90 -51.93 -0.36 1.01 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.09 1.57 7.31 -51.93 -0.38 1.19 16 32 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.09 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.09 1.07 7.86 -51.93 -0.41 0.66 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 45 H 0.10 1.13 8.13 -51.93 -0.42 0.71 16 46 H 0.08 1.22 7.70 -51.93 -0.40 0.82 16 47 H 0.08 1.42 5.77 -51.93 -0.30 1.12 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -29.02 377.85 -9.52 -38.55 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.77 Total: 1.37 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 1.25 Total: 8.10 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.60 Total: -48.11 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.64 Total: -15.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.43 Total: -6.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.02 -9.52 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254704316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.056 kcal (2) G-P(sol) polarization free energy of solvation -29.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds