Wall clock time and date at job start Tue Mar 31 2020 14:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00215 * 2 1 4 4 H 1.07995 * 120.00438 * 162.65897 * 3 2 1 5 5 C 1.38814 * 119.99781 * 342.94146 * 3 2 1 6 6 N 1.31626 * 119.99829 * 347.45926 * 5 3 2 7 7 Si 1.86796 * 120.00160 * 167.46169 * 5 3 2 8 8 H 1.48500 * 109.47072 * 59.99428 * 7 5 3 9 9 H 1.48498 * 109.47075 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47197 * 299.99875 * 7 5 3 11 11 C 1.46498 * 120.00317 * 179.97438 * 2 1 3 12 12 H 1.08994 * 109.59371 * 178.84739 * 11 2 1 13 13 C 1.55258 * 109.58952 * 58.54630 * 11 2 1 14 14 S 1.84165 * 100.99561 * 199.07721 * 13 11 2 15 15 C 1.82609 * 95.58474 * 34.80158 * 14 13 11 16 16 C 1.52727 * 115.07302 * 210.33975 * 15 14 13 17 17 N 1.47822 * 85.70485 * 220.44692 * 16 15 14 18 18 C 1.34778 * 134.36954 * 203.72570 * 17 16 15 19 19 O 1.21511 * 120.00631 * 180.02562 * 18 17 16 20 20 O 1.34641 * 119.99547 * 359.97438 * 18 17 16 21 21 C 1.45201 * 116.99703 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47231 * 60.00428 * 21 20 18 23 23 C 1.53006 * 109.46992 * 179.97438 * 21 20 18 24 24 C 1.52997 * 109.47258 * 299.99934 * 21 20 18 25 25 C 1.47830 * 91.27066 * 23.72863 * 17 16 15 26 26 C 1.52586 * 105.88408 * 340.56188 * 15 14 13 27 27 H 1.09002 * 109.46809 * 84.87709 * 1 2 3 28 28 H 1.08994 * 109.46962 * 204.88116 * 1 2 3 29 29 H 1.09003 * 109.47025 * 324.87850 * 1 2 3 30 30 H 0.96994 * 119.99512 * 179.97438 * 6 5 3 31 31 H 1.09000 * 111.11925 * 317.01578 * 13 11 2 32 32 H 1.09001 * 111.11547 * 81.15095 * 13 11 2 33 33 H 1.08996 * 113.83338 * 334.64261 * 16 15 14 34 34 H 1.09004 * 113.83519 * 106.25206 * 16 15 14 35 35 H 1.09002 * 109.46942 * 59.99592 * 22 21 20 36 36 H 1.09002 * 109.47315 * 179.97438 * 22 21 20 37 37 H 1.09006 * 109.47084 * 299.99680 * 22 21 20 38 38 H 1.09004 * 109.46420 * 60.00010 * 23 21 20 39 39 H 1.08992 * 109.47241 * 179.97438 * 23 21 20 40 40 H 1.08997 * 109.46926 * 300.00450 * 23 21 20 41 41 H 1.09006 * 109.46931 * 60.00397 * 24 21 20 42 42 H 1.09002 * 109.47039 * 180.02562 * 24 21 20 43 43 H 1.08991 * 109.47393 * 300.00376 * 24 21 20 44 44 H 1.08999 * 113.83474 * 222.08076 * 25 17 16 45 45 H 1.08998 * 113.83589 * 90.46400 * 25 17 16 46 46 H 1.08996 * 108.96826 * 236.41023 * 26 15 14 47 47 H 1.09001 * 108.96150 * 117.79977 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1929 1.2072 0.2788 5 6 1.5015 2.3617 -0.3527 6 7 0.3146 2.3141 -0.9197 7 14 2.3135 4.0112 -0.0226 8 1 3.6056 4.0814 -0.7512 9 1 1.4220 5.1037 -0.4882 10 1 2.5583 4.1597 1.4346 11 6 2.1976 -1.2687 0.0006 12 1 3.2694 -1.0719 -0.0202 13 6 1.7969 -2.1017 -1.2468 14 16 2.3335 -3.7863 -0.7314 15 6 1.9268 -3.5695 1.0356 16 6 2.8030 -4.3622 2.0034 17 7 1.5530 -4.6203 2.7489 18 6 1.2661 -4.9348 4.0277 19 8 0.1111 -5.0939 4.3699 20 8 2.2595 -5.0735 4.9259 21 6 1.8768 -5.4124 6.2849 22 6 1.1315 -6.7486 6.2867 23 6 3.1307 -5.5274 7.1542 24 6 0.9653 -4.3191 6.8458 25 6 0.7427 -4.3963 1.5329 26 6 1.8492 -2.0629 1.2644 27 1 -0.3633 0.0918 -1.0236 28 1 -0.3633 -0.9322 0.4324 29 1 -0.3633 0.8406 0.5912 30 1 -0.1385 3.1357 -1.1657 31 1 0.7203 -2.0663 -1.4135 32 1 2.3404 -1.7701 -2.1316 33 1 3.2468 -5.2558 1.5647 34 1 3.5224 -3.7506 2.5480 35 1 1.7810 -7.5274 5.8871 36 1 0.8446 -7.0032 7.3070 37 1 0.2382 -6.6672 5.6673 38 1 3.6621 -4.5757 7.1529 39 1 2.8435 -5.7814 8.1745 40 1 3.7798 -6.3065 6.7544 41 1 0.0720 -4.2377 6.2264 42 1 0.6784 -4.5734 7.8662 43 1 1.4963 -3.3673 6.8445 44 1 -0.1606 -3.8117 1.7071 45 1 0.5616 -5.3003 0.9516 46 1 2.5444 -1.7888 2.0578 47 1 0.8379 -1.8039 1.5780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254704316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:25 Heat of formation + Delta-G solvation = -26.970522 kcal Electronic energy + Delta-G solvation = -26914.449986 eV Core-core repulsion = 23225.464115 eV Total energy + Delta-G solvation = -3688.985871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00431 -40.62792 -38.36694 -37.58164 -35.13200 -34.69905 -32.15493 -30.44790 -28.37132 -28.30109 -28.13105 -27.84013 -27.43544 -25.32544 -23.39499 -21.70667 -20.82444 -20.06604 -19.01236 -18.93668 -17.90772 -17.67403 -17.20930 -16.86301 -16.26524 -16.10901 -15.62398 -15.42037 -15.30568 -15.10026 -14.72179 -14.46824 -14.30229 -14.27300 -13.67758 -13.34782 -13.30553 -13.11712 -12.95679 -12.87099 -12.85795 -12.82775 -12.66131 -12.53864 -12.49260 -12.38395 -12.30852 -12.16537 -12.09274 -11.84255 -11.52198 -11.40424 -11.15795 -10.88443 -10.64687 -9.95709 -8.96549 -8.67836 -7.84423 -5.28775 0.53802 1.10861 1.29888 1.47945 1.50519 1.56181 1.75584 2.49700 2.66036 3.02905 3.25619 3.38123 3.66488 3.75598 3.79546 3.81648 3.94379 4.03672 4.12137 4.17417 4.34765 4.38489 4.41900 4.52603 4.60293 4.60806 4.61567 4.75725 4.76075 4.77912 4.81207 4.85014 4.87611 4.90316 5.12320 5.15632 5.18803 5.27623 5.32789 5.40064 5.45643 5.60320 5.73800 6.27525 6.49882 7.11871 7.18877 7.82355 8.23931 9.18743 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003188 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.641776 B = 8781.980744 C = 9866.426847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.603 5.603 3 C -0.265 4.265 4 H 0.078 0.922 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.274 1.274 9 H -0.297 1.297 10 H -0.280 1.280 11 C 0.177 3.823 12 H 0.077 0.923 13 C -0.073 4.073 14 S -0.253 6.253 15 C -0.044 4.044 16 C 0.145 3.855 17 N -0.633 5.633 18 C 0.671 3.329 19 O -0.594 6.594 20 O -0.365 6.365 21 C 0.122 3.878 22 C -0.177 4.177 23 C -0.134 4.134 24 C -0.181 4.181 25 C 0.155 3.845 26 C -0.111 4.111 27 H 0.005 0.995 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -18.240 11.769 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.325 5.325 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.200 1.200 9 H -0.223 1.223 10 H -0.207 1.207 11 C 0.067 3.933 12 H 0.095 0.905 13 C -0.223 4.223 14 S -0.023 6.023 15 C -0.155 4.155 16 C 0.022 3.978 17 N -0.377 5.377 18 C 0.427 3.573 19 O -0.486 6.486 20 O -0.280 6.280 21 C 0.086 3.914 22 C -0.234 4.234 23 C -0.191 4.191 24 C -0.238 4.238 25 C 0.032 3.968 26 C -0.151 4.151 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.767 -19.129 11.451 23.028 hybrid contribution -0.716 2.251 0.399 2.395 sum 5.051 -16.878 11.850 21.233 Atomic orbital electron populations 1.20510 0.82535 0.95686 0.97691 1.44191 1.02096 1.00888 1.85291 1.19600 0.95730 0.85496 1.38674 0.90467 1.25669 0.97959 1.01406 0.99597 1.70258 1.16328 1.26736 1.45169 0.85323 0.77592 0.79485 0.77927 1.19994 1.22336 1.20662 1.21450 0.96519 0.85243 0.90084 0.90495 1.25028 1.03745 0.91129 1.02427 1.87304 1.84859 1.23227 1.06937 1.24188 0.99897 0.97674 0.93761 1.23283 0.87791 0.98926 0.87770 1.48876 1.12649 1.71651 1.04481 1.17646 0.82912 0.75777 0.80985 1.90886 1.21059 1.57632 1.78977 1.86326 1.37119 1.83155 1.21413 1.22466 0.97331 0.95318 0.76258 1.22456 1.01161 0.95408 1.04424 1.21877 0.94669 1.03553 0.99004 1.22485 1.00278 0.98156 1.02915 1.23527 0.94882 0.98921 0.79453 1.22034 1.03380 0.89808 0.99922 0.97660 0.95668 0.95999 0.94294 0.90174 0.88526 0.86659 0.87806 0.91719 0.88874 0.92235 0.91505 0.87763 0.90934 0.92323 0.88787 0.92419 0.89803 0.86585 0.90282 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.60 7.61 127.77 0.97 9.57 16 2 N -0.60 -28.26 2.84 -697.93 -1.98 -30.24 16 3 C -0.27 -13.85 9.68 84.03 0.81 -13.04 16 4 H 0.08 3.87 7.77 -2.91 -0.02 3.85 16 5 C -0.05 -2.78 5.14 84.86 0.44 -2.34 16 6 N -0.94 -53.95 10.34 21.65 0.22 -53.72 16 7 Si 0.97 43.95 29.57 68.60 2.03 45.98 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 9 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 C 0.18 6.46 2.97 45.86 0.14 6.59 16 12 H 0.08 2.84 7.84 -2.39 -0.02 2.83 16 13 C -0.07 -2.40 6.99 72.76 0.51 -1.89 16 14 S -0.25 -6.63 22.59 -56.49 -1.28 -7.90 16 15 C -0.04 -1.08 1.37 -11.04 -0.02 -1.10 16 16 C 0.15 3.05 8.18 86.03 0.70 3.76 16 17 N -0.63 -16.24 3.61 -988.44 -3.57 -19.81 16 18 C 0.67 19.51 8.22 129.79 1.07 20.58 16 19 O -0.59 -20.01 12.61 19.81 0.25 -19.76 16 20 O -0.37 -9.31 9.87 -55.50 -0.55 -9.86 16 21 C 0.12 2.46 1.13 -10.79 -0.01 2.45 16 22 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 23 C -0.13 -1.76 8.85 71.98 0.64 -1.13 16 24 C -0.18 -3.82 8.37 71.98 0.60 -3.21 16 25 C 0.15 3.76 8.16 86.04 0.70 4.46 16 26 C -0.11 -3.44 5.56 30.55 0.17 -3.27 16 27 H 0.01 0.27 7.51 -2.39 -0.02 0.25 16 28 H 0.02 1.03 6.48 -2.39 -0.02 1.02 16 29 H 0.02 1.15 6.90 -2.39 -0.02 1.13 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.08 2.80 7.31 -2.39 -0.02 2.78 16 32 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.12 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.10 2.04 7.86 -2.38 -0.02 2.02 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.49 5.88 -2.38 -0.01 1.48 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 1.61 5.88 -2.38 -0.01 1.60 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 2.21 7.85 -2.39 -0.02 2.19 16 45 H 0.12 2.41 8.13 -2.39 -0.02 2.39 16 46 H 0.08 2.41 7.70 -2.39 -0.02 2.39 16 47 H 0.06 2.24 5.77 -2.39 -0.01 2.23 16 Total: -1.00 -63.86 377.85 3.40 -60.47 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.95 Total: 16.17 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.32 Total: 18.68 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -5.33 Total: -103.77 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.30 Total: -29.62 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -6.63 SS G_CDS: -1.28 Total: -7.90 kcal Total: -63.86 3.40 -60.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254704316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.497 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds