Wall clock time and date at job start Tue Mar 31 2020 15:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47498 * 2 1 4 4 H 1.09006 * 109.46725 * 304.56953 * 3 2 1 5 5 C 1.50695 * 109.47458 * 184.56970 * 3 2 1 6 6 H 1.07998 * 119.99857 * 245.46734 * 5 3 2 7 7 C 1.37880 * 119.99933 * 65.46319 * 5 3 2 8 8 N 1.31508 * 120.00071 * 9.20320 * 7 5 3 9 9 Si 1.86803 * 119.99859 * 189.19918 * 7 5 3 10 10 H 1.48501 * 109.47162 * 270.00221 * 9 7 5 11 11 H 1.48501 * 109.47230 * 30.00316 * 9 7 5 12 12 H 1.48502 * 109.46756 * 150.00226 * 9 7 5 13 13 N 1.46897 * 109.47413 * 64.56487 * 3 2 1 14 14 C 1.46894 * 111.00548 * 206.44187 * 13 3 2 15 15 H 1.09002 * 109.46978 * 315.24395 * 14 13 3 16 16 C 1.50701 * 109.47453 * 195.24048 * 14 13 3 17 17 C 1.38227 * 119.61560 * 359.67027 * 16 14 13 18 18 C 1.38627 * 119.15727 * 179.97438 * 17 16 14 19 19 C 1.38674 * 118.42201 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.41539 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47096 * 90.00402 * 20 19 18 22 22 F 1.39904 * 109.46887 * 209.99813 * 20 19 18 23 23 F 1.39890 * 109.47214 * 329.99724 * 20 19 18 24 24 C 1.38185 * 119.16455 * 359.97438 * 19 18 17 25 25 N 1.31858 * 119.61614 * 179.38997 * 16 14 13 26 26 C 1.53006 * 109.47189 * 75.24088 * 14 13 3 27 27 C 1.52997 * 117.49870 * 253.51952 * 26 14 13 28 28 C 1.52997 * 117.50200 * 184.85604 * 26 14 13 29 29 H 1.08996 * 109.47354 * 184.63908 * 1 2 3 30 30 H 1.09006 * 109.46627 * 304.63820 * 1 2 3 31 31 H 1.08993 * 109.47292 * 64.63235 * 1 2 3 32 32 H 1.08999 * 109.46446 * 239.99353 * 2 1 3 33 33 H 1.09002 * 109.46788 * 120.00183 * 2 1 3 34 34 H 0.97001 * 120.00148 * 356.84217 * 8 7 5 35 35 H 1.00901 * 110.99771 * 82.48665 * 13 3 2 36 36 H 1.07996 * 120.41914 * 359.95954 * 17 16 14 37 37 H 1.07998 * 120.78599 * 180.02562 * 18 17 16 38 38 H 1.07996 * 119.61368 * 180.02562 * 24 19 18 39 39 H 1.09000 * 115.55025 * 39.18556 * 26 14 13 40 40 H 1.08993 * 117.50264 * 359.97438 * 27 26 14 41 41 H 1.08997 * 117.50018 * 145.02254 * 27 26 14 42 42 H 1.08993 * 117.49970 * 214.98167 * 28 26 14 43 43 H 1.09003 * 117.49567 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6114 1.9793 -0.8463 5 6 3.5428 1.4439 -0.1132 6 1 4.1455 1.8100 0.7047 7 6 4.1481 0.9777 -1.2609 8 7 3.4218 0.7023 -2.3221 9 14 6.0000 0.7375 -1.3086 10 1 6.6499 1.9898 -1.7718 11 1 6.4905 0.3990 0.0516 12 1 6.3318 -0.3675 -2.2436 13 7 1.6426 2.1024 1.2507 14 6 1.5319 3.5556 1.0671 15 1 2.3913 3.9170 0.5023 16 6 1.4958 4.2309 2.4138 17 6 1.5584 3.4659 3.5634 18 6 1.5250 4.0970 4.7973 19 6 1.4289 5.4801 4.8289 20 6 1.3897 6.2123 6.1455 21 9 2.6934 6.5306 6.5410 22 9 0.6454 7.3883 6.0031 23 9 0.7941 5.3979 7.1145 24 6 1.3706 6.1784 3.6379 25 7 1.4104 5.5450 2.4818 26 6 0.2468 3.8765 0.3011 27 6 0.3845 4.3073 -1.1605 28 6 0.0041 5.3351 -0.0919 29 1 -0.3634 -1.0242 0.0831 30 1 -0.3633 0.5842 0.8456 31 1 -0.3633 0.4402 -0.9285 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.4560 0.7833 -2.2831 35 1 2.2845 1.8801 1.9967 36 1 1.6321 2.3903 3.5012 37 1 1.5727 3.5251 5.7122 38 1 1.2961 7.2557 3.6540 39 1 -0.6226 3.2761 0.5690 40 1 1.3905 4.3625 -1.5763 41 1 -0.3945 3.9907 -1.8540 42 1 -1.0250 5.6942 -0.0827 43 1 0.7597 6.0662 0.1957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:49 Heat of formation + Delta-G solvation = -94.849788 kcal Electronic energy + Delta-G solvation = -28566.413896 eV Core-core repulsion = 24197.183867 eV Total energy + Delta-G solvation = -4369.230029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.36514 -47.88862 -47.82380 -40.61862 -37.82552 -35.65773 -33.51747 -32.93035 -31.66552 -30.67639 -27.65201 -25.80157 -24.40666 -23.83525 -22.83257 -22.23671 -21.85102 -20.09372 -19.60369 -18.70507 -18.66142 -18.59590 -17.18963 -16.57535 -16.13360 -15.35685 -14.89713 -14.79733 -14.61186 -14.57696 -14.28153 -14.05735 -14.03651 -13.98823 -13.82318 -13.60185 -13.42038 -13.29902 -12.99606 -12.47854 -12.08537 -12.00943 -11.77419 -11.49525 -11.14751 -11.04253 -10.77717 -10.47149 -10.21367 -10.19281 -10.04923 -9.96220 -9.79059 -9.67463 -9.41284 -9.21702 -8.98266 -8.33589 -7.50728 -6.41119 -4.18280 0.63104 1.07190 2.43660 3.36717 3.40132 3.44472 3.48249 3.55039 3.79517 4.05175 4.22009 4.25730 4.45066 4.54223 4.64299 4.86280 5.03165 5.14962 5.27043 5.35089 5.50041 5.53628 5.58243 5.77375 5.86235 5.96239 6.06545 6.11666 6.18305 6.23088 6.34283 6.38524 6.41117 6.59363 6.69257 6.82195 6.87610 7.09288 7.25125 7.46014 7.76263 7.79033 7.94170 8.30386 8.46548 8.75529 9.54607 10.93061 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003425 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.144196 B = 8172.314969 C = 8764.712664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.202 3.798 4 H 0.039 0.961 5 C -0.632 4.632 6 H 0.046 0.954 7 C 0.030 3.970 8 N -0.904 5.904 9 Si 1.062 2.938 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.283 1.283 13 N -0.677 5.677 14 C 0.166 3.834 15 H 0.073 0.927 16 C 0.183 3.817 17 C -0.163 4.163 18 C -0.025 4.025 19 C -0.258 4.258 20 C 0.518 3.482 21 F -0.177 7.177 22 F -0.177 7.177 23 F -0.178 7.178 24 C 0.154 3.846 25 N -0.472 5.472 26 C -0.124 4.124 27 C -0.174 4.174 28 C -0.172 4.172 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.274 0.726 35 H 0.331 0.669 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 9.026 13.256 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.094 3.906 4 H 0.057 0.943 5 C -0.671 4.671 6 H 0.064 0.936 7 C -0.176 4.176 8 N -0.539 5.539 9 Si 0.891 3.109 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.209 1.209 13 N -0.309 5.309 14 C 0.055 3.945 15 H 0.091 0.909 16 C 0.046 3.954 17 C -0.183 4.183 18 C -0.051 4.051 19 C -0.262 4.262 20 C 0.463 3.537 21 F -0.158 7.158 22 F -0.158 7.158 23 F -0.159 7.159 24 C -0.005 4.005 25 N -0.180 5.180 26 C -0.143 4.143 27 C -0.211 4.211 28 C -0.210 4.210 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.673 8.934 11.407 15.560 hybrid contribution -0.209 0.270 2.053 2.081 sum -5.882 9.204 13.460 17.334 Atomic orbital electron populations 1.21728 0.98218 0.98990 1.00874 1.21548 0.92937 0.99340 1.00768 1.19299 0.93764 0.90566 0.86927 0.94330 1.22573 0.92120 1.47709 1.04678 0.93557 1.25632 1.06539 0.93476 0.91950 1.70768 1.08383 1.45734 1.29001 0.83647 0.74818 0.76970 0.75497 1.21615 1.21558 1.20897 1.61002 1.54796 1.04628 1.10433 1.19774 0.96725 0.89474 0.88534 0.90920 1.21804 0.88187 0.89035 0.96368 1.22154 1.01518 1.03132 0.91474 1.21385 0.91901 0.92241 0.99556 1.20959 1.15395 0.96263 0.93563 1.18104 0.73749 0.77052 0.84826 1.93232 1.37408 1.93131 1.92045 1.93190 1.77079 1.49709 1.95862 1.93185 1.83964 1.72721 1.66056 1.22580 0.91247 1.00519 0.86106 1.67666 1.12923 1.10302 1.27111 1.21959 0.98212 0.97273 0.96885 1.22989 1.02882 1.03519 0.91665 1.22974 1.01951 0.92646 1.03432 0.95264 0.92531 0.94369 0.92010 0.93977 0.91464 0.85020 0.82391 0.83775 0.81952 0.87868 0.88637 0.89376 0.89842 0.87735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.85 37.16 0.37 -2.22 16 2 C -0.11 -2.31 5.31 -26.73 -0.14 -2.45 16 3 C 0.20 4.50 1.42 -68.87 -0.10 4.40 16 4 H 0.04 0.94 5.87 -51.93 -0.30 0.64 16 5 C -0.63 -16.09 8.26 -34.44 -0.28 -16.38 16 6 H 0.05 1.19 7.70 -52.49 -0.40 0.79 16 7 C 0.03 0.81 5.17 -17.82 -0.09 0.72 16 8 N -0.90 -25.44 13.04 55.43 0.72 -24.72 16 9 Si 1.06 24.14 29.91 -169.99 -5.08 19.05 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.68 -12.47 4.81 -102.18 -0.49 -12.96 16 14 C 0.17 2.89 2.56 -68.86 -0.18 2.71 16 15 H 0.07 1.50 7.61 -51.93 -0.40 1.10 16 16 C 0.18 2.79 6.10 -82.58 -0.50 2.29 16 17 C -0.16 -2.17 9.10 -39.44 -0.36 -2.52 16 18 C -0.03 -0.29 9.52 -39.28 -0.37 -0.66 16 19 C -0.26 -2.98 5.46 -104.48 -0.57 -3.56 16 20 C 0.52 5.53 3.38 36.01 0.12 5.66 16 21 F -0.18 -1.99 17.30 2.25 0.04 -1.95 16 22 F -0.18 -1.87 16.49 2.25 0.04 -1.83 16 23 F -0.18 -1.91 16.53 2.25 0.04 -1.87 16 24 C 0.15 1.88 10.56 -17.55 -0.19 1.70 16 25 N -0.47 -6.86 8.43 -9.47 -0.08 -6.94 16 26 C -0.12 -2.03 4.73 -90.62 -0.43 -2.46 16 27 C -0.17 -2.83 9.35 -26.69 -0.25 -3.08 16 28 C -0.17 -2.52 9.42 -26.69 -0.25 -2.78 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 1.00 7.61 -51.93 -0.40 0.60 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.49 6.37 -51.93 -0.33 1.16 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.27 7.64 6.05 -40.82 -0.25 7.40 16 35 H 0.33 5.98 6.15 -39.29 -0.24 5.73 16 36 H 0.16 2.01 6.06 -52.49 -0.32 1.69 16 37 H 0.14 1.31 7.69 -52.49 -0.40 0.90 16 38 H 0.16 1.58 7.61 -52.49 -0.40 1.18 16 39 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.10 1.74 8.08 -51.93 -0.42 1.32 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.10 1.57 7.18 -51.93 -0.37 1.20 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -26.87 360.87 -8.17 -35.05 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.56 Total: 9.35 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -3.23 Total: -18.63 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.15 Total: -44.62 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.11 Total: -5.65 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.08 Total: 19.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.87 -8.17 -35.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.803 kcal (2) G-P(sol) polarization free energy of solvation -26.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds