Wall clock time and date at job start Tue Mar 31 2020 15:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47498 * 2 1 4 4 H 1.09006 * 109.46725 * 304.56953 * 3 2 1 5 5 C 1.50695 * 109.47458 * 184.56970 * 3 2 1 6 6 H 1.07998 * 119.99857 * 245.46734 * 5 3 2 7 7 C 1.37880 * 119.99933 * 65.46319 * 5 3 2 8 8 N 1.31508 * 120.00071 * 9.20320 * 7 5 3 9 9 Si 1.86803 * 119.99859 * 189.19918 * 7 5 3 10 10 H 1.48501 * 109.47162 * 270.00221 * 9 7 5 11 11 H 1.48501 * 109.47230 * 30.00316 * 9 7 5 12 12 H 1.48502 * 109.46756 * 150.00226 * 9 7 5 13 13 N 1.46897 * 109.47413 * 64.56487 * 3 2 1 14 14 C 1.46894 * 111.00548 * 206.44187 * 13 3 2 15 15 H 1.09002 * 109.46978 * 315.24395 * 14 13 3 16 16 C 1.50701 * 109.47453 * 195.24048 * 14 13 3 17 17 C 1.38227 * 119.61560 * 359.67027 * 16 14 13 18 18 C 1.38627 * 119.15727 * 179.97438 * 17 16 14 19 19 C 1.38674 * 118.42201 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.41539 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47096 * 90.00402 * 20 19 18 22 22 F 1.39904 * 109.46887 * 209.99813 * 20 19 18 23 23 F 1.39890 * 109.47214 * 329.99724 * 20 19 18 24 24 C 1.38185 * 119.16455 * 359.97438 * 19 18 17 25 25 N 1.31858 * 119.61614 * 179.38997 * 16 14 13 26 26 C 1.53006 * 109.47189 * 75.24088 * 14 13 3 27 27 C 1.52997 * 117.49870 * 253.51952 * 26 14 13 28 28 C 1.52997 * 117.50200 * 184.85604 * 26 14 13 29 29 H 1.08996 * 109.47354 * 184.63908 * 1 2 3 30 30 H 1.09006 * 109.46627 * 304.63820 * 1 2 3 31 31 H 1.08993 * 109.47292 * 64.63235 * 1 2 3 32 32 H 1.08999 * 109.46446 * 239.99353 * 2 1 3 33 33 H 1.09002 * 109.46788 * 120.00183 * 2 1 3 34 34 H 0.97001 * 120.00148 * 356.84217 * 8 7 5 35 35 H 1.00901 * 110.99771 * 82.48665 * 13 3 2 36 36 H 1.07996 * 120.41914 * 359.95954 * 17 16 14 37 37 H 1.07998 * 120.78599 * 180.02562 * 18 17 16 38 38 H 1.07996 * 119.61368 * 180.02562 * 24 19 18 39 39 H 1.09000 * 115.55025 * 39.18556 * 26 14 13 40 40 H 1.08993 * 117.50264 * 359.97438 * 27 26 14 41 41 H 1.08997 * 117.50018 * 145.02254 * 27 26 14 42 42 H 1.08993 * 117.49970 * 214.98167 * 28 26 14 43 43 H 1.09003 * 117.49567 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6114 1.9793 -0.8463 5 6 3.5428 1.4439 -0.1132 6 1 4.1455 1.8100 0.7047 7 6 4.1481 0.9777 -1.2609 8 7 3.4218 0.7023 -2.3221 9 14 6.0000 0.7375 -1.3086 10 1 6.6499 1.9898 -1.7718 11 1 6.4905 0.3990 0.0516 12 1 6.3318 -0.3675 -2.2436 13 7 1.6426 2.1024 1.2507 14 6 1.5319 3.5556 1.0671 15 1 2.3913 3.9170 0.5023 16 6 1.4958 4.2309 2.4138 17 6 1.5584 3.4659 3.5634 18 6 1.5250 4.0970 4.7973 19 6 1.4289 5.4801 4.8289 20 6 1.3897 6.2123 6.1455 21 9 2.6934 6.5306 6.5410 22 9 0.6454 7.3883 6.0031 23 9 0.7941 5.3979 7.1145 24 6 1.3706 6.1784 3.6379 25 7 1.4104 5.5450 2.4818 26 6 0.2468 3.8765 0.3011 27 6 0.3845 4.3073 -1.1605 28 6 0.0041 5.3351 -0.0919 29 1 -0.3634 -1.0242 0.0831 30 1 -0.3633 0.5842 0.8456 31 1 -0.3633 0.4402 -0.9285 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.4560 0.7833 -2.2831 35 1 2.2845 1.8801 1.9967 36 1 1.6321 2.3903 3.5012 37 1 1.5727 3.5251 5.7122 38 1 1.2961 7.2557 3.6540 39 1 -0.6226 3.2761 0.5690 40 1 1.3905 4.3625 -1.5763 41 1 -0.3945 3.9907 -1.8540 42 1 -1.0250 5.6942 -0.0827 43 1 0.7597 6.0662 0.1957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:47 Heat of formation + Delta-G solvation = -107.536105 kcal Electronic energy + Delta-G solvation = -28566.964016 eV Core-core repulsion = 24197.183867 eV Total energy + Delta-G solvation = -4369.780149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.21611 -48.72657 -48.68283 -41.69911 -39.21352 -37.25977 -34.88084 -34.10399 -33.35000 -31.99518 -29.02482 -27.26235 -25.76271 -25.03455 -24.43129 -23.37058 -23.07911 -21.66526 -21.07457 -19.61267 -19.54772 -19.47781 -19.04992 -17.70302 -17.32421 -16.69520 -16.07179 -16.03978 -15.67721 -15.58729 -15.50261 -15.45865 -15.12584 -14.92976 -14.89615 -14.83153 -14.63802 -14.52739 -14.25769 -14.07178 -13.60897 -13.41967 -13.25704 -12.80153 -12.63462 -12.46616 -12.36473 -12.25697 -11.98732 -11.64846 -11.57220 -11.23728 -11.19362 -11.00198 -10.89132 -10.50791 -10.34534 -10.26667 -9.22099 -8.49183 -6.29208 -0.39172 0.09908 1.50975 1.55194 1.57422 1.74388 2.40582 2.55285 2.57664 2.86778 2.93050 3.00364 3.22732 3.35450 3.54831 3.63448 3.69044 3.89100 4.00916 4.10182 4.22548 4.31523 4.43496 4.49962 4.59147 4.62128 4.76285 4.77857 4.80722 4.84528 4.88812 5.03843 5.07744 5.23741 5.27119 5.31781 5.41091 5.46701 5.53302 5.71744 5.97335 5.99663 6.47356 6.60078 6.69918 6.81211 7.50725 8.81600 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003425 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.144196 B = 8172.314969 C = 8764.712664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C 0.210 3.790 4 H 0.015 0.985 5 C -0.635 4.635 6 H 0.039 0.961 7 C -0.017 4.017 8 N -0.930 5.930 9 Si 1.102 2.898 10 H -0.283 1.283 11 H -0.273 1.273 12 H -0.285 1.285 13 N -0.660 5.660 14 C 0.173 3.827 15 H 0.032 0.968 16 C 0.163 3.837 17 C -0.167 4.167 18 C -0.016 4.016 19 C -0.253 4.253 20 C 0.526 3.474 21 F -0.179 7.179 22 F -0.174 7.174 23 F -0.175 7.175 24 C 0.151 3.849 25 N -0.489 5.489 26 C -0.131 4.131 27 C -0.186 4.186 28 C -0.145 4.145 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.334 0.666 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.187 0.813 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.880 9.708 15.591 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C 0.101 3.899 4 H 0.033 0.967 5 C -0.674 4.674 6 H 0.058 0.942 7 C -0.218 4.218 8 N -0.566 5.566 9 Si 0.926 3.074 10 H -0.209 1.209 11 H -0.199 1.199 12 H -0.210 1.210 13 N -0.292 5.292 14 C 0.062 3.938 15 H 0.049 0.951 16 C 0.027 3.973 17 C -0.187 4.187 18 C -0.041 4.041 19 C -0.256 4.256 20 C 0.471 3.529 21 F -0.160 7.160 22 F -0.155 7.155 23 F -0.157 7.157 24 C -0.007 4.007 25 N -0.197 5.197 26 C -0.150 4.150 27 C -0.223 4.223 28 C -0.182 4.182 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.204 0.796 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.337 9.626 13.764 17.951 hybrid contribution -0.015 0.141 1.415 1.422 sum -6.352 9.766 15.179 19.135 Atomic orbital electron populations 1.21591 0.95496 1.00432 1.01016 1.21405 0.95312 0.98122 0.99207 1.19070 0.91871 0.91220 0.87787 0.96681 1.22923 0.94024 1.46389 1.04051 0.94250 1.26787 1.09769 0.93269 0.91929 1.70863 1.07969 1.47895 1.29923 0.83114 0.71059 0.77004 0.76215 1.20932 1.19857 1.21037 1.60939 1.54112 1.05426 1.08673 1.19561 0.95706 0.88549 0.89981 0.95064 1.21450 0.90541 0.89713 0.95605 1.22159 1.01742 1.03204 0.91582 1.21665 0.90237 0.92417 0.99791 1.21088 1.14222 0.96445 0.93874 1.17874 0.73672 0.76995 0.84313 1.93236 1.37616 1.93136 1.92007 1.93202 1.76989 1.49527 1.95826 1.93197 1.83903 1.72671 1.65881 1.22965 0.90527 1.01602 0.85628 1.67582 1.13591 1.10008 1.28522 1.21952 0.97781 0.98818 0.96481 1.22918 1.01712 1.05517 0.92186 1.22968 1.03019 0.91449 1.00778 0.93284 0.91471 0.94915 0.95110 0.93867 0.92545 0.84685 0.82108 0.81000 0.79628 0.87616 0.91506 0.88402 0.87469 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.85 71.98 0.71 -3.89 16 2 C -0.10 -4.43 5.31 30.59 0.16 -4.27 16 3 C 0.21 9.58 1.42 44.17 0.06 9.64 16 4 H 0.02 0.78 5.87 -2.38 -0.01 0.76 16 5 C -0.63 -33.17 8.26 25.60 0.21 -32.96 16 6 H 0.04 2.07 7.70 -2.91 -0.02 2.04 16 7 C -0.02 -0.91 5.17 84.66 0.44 -0.47 16 8 N -0.93 -54.09 13.04 21.45 0.28 -53.81 16 9 Si 1.10 49.18 29.91 68.60 2.05 51.24 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.66 -24.56 4.81 -477.18 -2.30 -26.86 16 14 C 0.17 6.15 2.56 44.17 0.11 6.27 16 15 H 0.03 1.37 7.61 -2.39 -0.02 1.35 16 16 C 0.16 4.89 6.10 42.55 0.26 5.15 16 17 C -0.17 -4.18 9.10 22.36 0.20 -3.97 16 18 C -0.02 -0.31 9.52 22.47 0.21 -0.10 16 19 C -0.25 -5.15 5.46 -19.77 -0.11 -5.26 16 20 C 0.53 9.69 3.38 71.24 0.24 9.94 16 21 F -0.18 -3.53 17.30 44.97 0.78 -2.75 16 22 F -0.17 -3.17 16.49 44.97 0.74 -2.42 16 23 F -0.18 -3.20 16.53 44.97 0.74 -2.46 16 24 C 0.15 3.37 10.56 84.67 0.89 4.26 16 25 N -0.49 -13.66 8.43 -183.88 -1.55 -15.22 16 26 C -0.13 -4.32 4.73 -10.79 -0.05 -4.37 16 27 C -0.19 -6.26 9.35 30.62 0.29 -5.97 16 28 C -0.14 -4.14 9.42 30.62 0.29 -3.85 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 2.26 7.61 -2.38 -0.02 2.25 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.03 1.52 6.37 -2.39 -0.02 1.50 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.26 15.42 6.05 -92.71 -0.56 14.86 16 35 H 0.33 12.06 6.15 -89.69 -0.55 11.51 16 36 H 0.16 3.86 6.06 -2.91 -0.02 3.84 16 37 H 0.17 2.47 7.69 -2.91 -0.02 2.45 16 38 H 0.19 3.12 7.61 -2.91 -0.02 3.10 16 39 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.07 2.61 8.08 -2.39 -0.02 2.59 16 41 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.10 2.98 7.18 -2.39 -0.02 2.97 16 Total: -1.00 -59.02 360.87 5.38 -53.64 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.71 Total: 28.51 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.92 Total: -29.87 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -3.57 Total: -95.88 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 2.26 Total: -7.63 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.05 Total: 51.24 kcal Total: -59.02 5.38 -53.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.896 kcal (2) G-P(sol) polarization free energy of solvation -59.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds