Wall clock time and date at job start Tue Mar 31 2020 15:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 H 1.08994 * 109.47634 * 302.94509 * 3 2 1 5 5 C 1.50699 * 109.47057 * 182.94476 * 3 2 1 6 6 H 1.07999 * 120.00033 * 240.00553 * 5 3 2 7 7 C 1.37874 * 119.99991 * 59.72602 * 5 3 2 8 8 N 1.31517 * 120.00022 * 0.27455 * 7 5 3 9 9 Si 1.86806 * 120.00016 * 180.27794 * 7 5 3 10 10 H 1.48494 * 109.47396 * 60.00136 * 9 7 5 11 11 H 1.48502 * 109.47274 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47130 * 299.99870 * 9 7 5 13 13 N 1.46905 * 109.47176 * 62.94820 * 3 2 1 14 14 C 1.46898 * 110.99836 * 258.42216 * 13 3 2 15 15 H 1.09001 * 109.47012 * 23.03806 * 14 13 3 16 16 C 1.50695 * 109.47129 * 143.03894 * 14 13 3 17 17 C 1.38233 * 119.61861 * 240.58587 * 16 14 13 18 18 C 1.38630 * 119.15961 * 179.97438 * 17 16 14 19 19 C 1.38674 * 118.42359 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.42088 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47412 * 89.99989 * 20 19 18 22 22 F 1.39901 * 109.47021 * 210.00096 * 20 19 18 23 23 F 1.39898 * 109.47120 * 329.99833 * 20 19 18 24 24 C 1.38183 * 119.16275 * 359.97438 * 19 18 17 25 25 N 1.31854 * 119.62026 * 60.31450 * 16 14 13 26 26 C 1.53000 * 109.47252 * 263.03999 * 14 13 3 27 27 C 1.52999 * 117.49551 * 13.82072 * 26 14 13 28 28 C 1.53001 * 117.49794 * 305.19782 * 26 14 13 29 29 H 1.08997 * 109.47574 * 56.81050 * 1 2 3 30 30 H 1.09000 * 109.47030 * 176.81033 * 1 2 3 31 31 H 1.09001 * 109.47305 * 296.80843 * 1 2 3 32 32 H 1.09003 * 109.47257 * 240.00515 * 2 1 3 33 33 H 1.08997 * 109.47378 * 120.00022 * 2 1 3 34 34 H 0.96996 * 119.99811 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99558 * 22.37269 * 13 3 2 36 36 H 1.07996 * 120.42281 * 359.95963 * 17 16 14 37 37 H 1.08001 * 120.79139 * 180.02562 * 18 17 16 38 38 H 1.07995 * 119.62242 * 179.97438 * 24 19 18 39 39 H 1.09003 * 115.54949 * 159.52465 * 26 14 13 40 40 H 1.08999 * 117.50287 * 359.97438 * 27 26 14 41 41 H 1.08994 * 117.50072 * 145.02472 * 27 26 14 42 42 H 1.08997 * 117.49710 * 214.97737 * 28 26 14 43 43 H 1.08994 * 117.49810 * 359.97433 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6342 1.9714 -0.8623 5 6 3.5451 1.4432 -0.0730 6 1 4.1239 1.8971 0.7178 7 6 4.1835 0.8593 -1.1465 8 7 3.4787 0.3065 -2.1095 9 14 6.0496 0.8533 -1.2332 10 1 6.5975 0.1339 -0.0554 11 1 6.4851 0.1702 -2.4777 12 1 6.5495 2.2516 -1.2357 13 7 1.6092 2.1142 1.2335 14 6 0.4526 2.9844 0.9828 15 1 -0.0702 2.6452 0.0885 16 6 -0.4828 2.9290 2.1629 17 6 -1.7784 2.4802 1.9872 18 6 -2.6307 2.4327 3.0795 19 6 -2.1462 2.8407 4.3131 20 6 -3.0336 2.8071 5.5306 21 9 -2.9143 1.5637 6.1605 22 9 -2.6473 3.8181 6.4172 23 9 -4.3630 3.0086 5.1443 24 6 -0.8389 3.2776 4.4121 25 7 -0.0545 3.3042 3.3521 26 6 0.9316 4.4231 0.7786 27 6 2.4272 4.6429 0.5424 28 6 1.7967 5.0423 1.8781 29 1 -0.3634 0.5625 -0.8600 30 1 -0.3633 -1.0261 -0.0572 31 1 -0.3634 0.4635 0.9172 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9279 -0.1046 -2.8645 35 1 1.4061 1.4427 1.9587 36 1 -2.1224 2.1706 1.0114 37 1 -3.6480 2.0861 2.9724 38 1 -0.4540 3.5975 5.3691 39 1 0.2371 5.0799 0.2547 40 1 3.0699 3.7627 0.5329 41 1 2.7169 5.4444 -0.1369 42 1 1.6717 6.1066 2.0774 43 1 2.0243 4.4250 2.7470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:55 Heat of formation + Delta-G solvation = -86.997519 kcal Electronic energy + Delta-G solvation = -28777.923183 eV Core-core repulsion = 24409.033654 eV Total energy + Delta-G solvation = -4368.889529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.38133 -47.90622 -47.83767 -40.64725 -37.81166 -35.24274 -33.36205 -32.62724 -31.80048 -30.37632 -27.95811 -26.07405 -24.82365 -23.74696 -22.76249 -22.34218 -21.40999 -19.82139 -19.29179 -18.71702 -18.63906 -18.61359 -16.83649 -16.48761 -16.13792 -15.04421 -14.89021 -14.71159 -14.67625 -14.52062 -14.30625 -14.27581 -14.05215 -14.00312 -13.74395 -13.63277 -13.41921 -13.20465 -12.90698 -12.34218 -12.24460 -11.94280 -11.57640 -11.30163 -10.99708 -10.86593 -10.71261 -10.48687 -10.25993 -10.00600 -9.92532 -9.79544 -9.76060 -9.50555 -9.35720 -9.12427 -8.99905 -8.34844 -7.29098 -5.99892 -4.02431 0.58177 1.02376 2.41549 3.34487 3.38643 3.41333 3.43888 3.46207 3.77169 4.15800 4.20236 4.37451 4.44861 4.51825 4.74679 4.85124 5.18050 5.21285 5.29459 5.45636 5.48354 5.63046 5.70047 5.77906 5.96112 6.00238 6.02871 6.09180 6.20753 6.28511 6.38238 6.43246 6.61373 6.70821 6.90296 7.03113 7.12344 7.31799 7.45361 7.70370 7.80650 7.89371 8.25157 8.47402 8.54138 9.04238 9.62416 11.06123 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.003224 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.984364 B = 8683.706461 C = 9207.253959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.219 3.781 4 H 0.033 0.967 5 C -0.490 4.490 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.277 1.277 13 N -0.659 5.659 14 C 0.164 3.836 15 H 0.066 0.934 16 C 0.173 3.827 17 C -0.172 4.172 18 C -0.026 4.026 19 C -0.255 4.255 20 C 0.517 3.483 21 F -0.176 7.176 22 F -0.176 7.176 23 F -0.179 7.179 24 C 0.154 3.846 25 N -0.448 5.448 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.161 4.161 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.036 0.964 34 H 0.260 0.740 35 H 0.327 0.673 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.086 0.914 40 H 0.140 0.860 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 5.069 10.631 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.112 3.888 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.290 5.290 14 C 0.053 3.947 15 H 0.083 0.917 16 C 0.036 3.964 17 C -0.192 4.192 18 C -0.051 4.051 19 C -0.259 4.259 20 C 0.462 3.538 21 F -0.157 7.157 22 F -0.157 7.157 23 F -0.160 7.160 24 C -0.005 4.005 25 N -0.155 5.155 26 C -0.177 4.177 27 C -0.196 4.196 28 C -0.198 4.198 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.144 0.856 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.104 0.896 40 H 0.157 0.843 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.295 5.764 10.485 17.156 hybrid contribution -1.023 -1.042 -0.135 1.466 sum -13.318 4.722 10.350 17.515 Atomic orbital electron populations 1.21952 0.99773 0.99674 0.99455 1.22255 0.91276 1.02149 1.03192 1.19347 0.95355 0.88367 0.85753 0.94874 1.21115 0.90693 1.35335 1.05698 0.91714 1.24931 0.98128 0.95551 0.95751 1.69848 1.35011 1.38602 1.10155 0.86617 0.85841 0.78216 0.77046 1.20441 1.21624 1.20253 1.60890 1.30821 1.25548 1.11721 1.20147 0.89359 0.94646 0.90573 0.91665 1.22099 0.92280 0.88381 0.93672 1.22118 0.94572 1.02354 1.00164 1.21315 1.00242 0.92833 0.90750 1.20998 0.97887 1.12963 0.94060 1.18108 0.78581 0.73791 0.83298 1.93236 1.95815 1.42767 1.83928 1.93195 1.90836 1.60784 1.70927 1.93184 1.37048 1.94798 1.90985 1.22743 0.87824 0.91396 0.98502 1.67849 1.35566 1.13799 0.98309 1.22105 0.95081 0.95096 1.05373 1.23221 0.94842 1.04082 0.97452 1.22750 1.04262 0.98568 0.94200 0.93719 0.94552 0.94935 0.88073 0.94544 0.93047 0.85567 0.83697 0.83855 0.81856 0.89621 0.84251 0.91164 0.91417 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.77 37.16 0.33 -2.34 16 2 C -0.15 -3.24 5.06 -26.73 -0.14 -3.38 16 3 C 0.22 4.92 1.64 -68.86 -0.11 4.81 16 4 H 0.03 0.83 7.35 -51.93 -0.38 0.45 16 5 C -0.49 -12.48 7.48 -34.44 -0.26 -12.74 16 6 H 0.06 1.69 7.44 -52.49 -0.39 1.30 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -24.28 11.29 55.43 0.63 -23.65 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.66 -12.59 4.52 -102.17 -0.46 -13.05 16 14 C 0.16 2.69 1.73 -68.87 -0.12 2.58 16 15 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 16 C 0.17 2.48 4.94 -82.59 -0.41 2.07 16 17 C -0.17 -2.04 8.88 -39.44 -0.35 -2.39 16 18 C -0.03 -0.27 9.52 -39.28 -0.37 -0.64 16 19 C -0.26 -2.82 5.46 -104.48 -0.57 -3.39 16 20 C 0.52 5.35 3.38 36.00 0.12 5.48 16 21 F -0.18 -1.94 17.30 2.25 0.04 -1.90 16 22 F -0.18 -1.83 16.49 2.25 0.04 -1.79 16 23 F -0.18 -1.83 16.53 2.25 0.04 -1.80 16 24 C 0.15 1.85 10.57 -17.55 -0.19 1.66 16 25 N -0.45 -6.41 8.42 -9.47 -0.08 -6.49 16 26 C -0.16 -2.61 5.78 -90.62 -0.52 -3.13 16 27 C -0.16 -2.90 9.75 -26.73 -0.26 -3.16 16 28 C -0.16 -2.62 9.24 -26.73 -0.25 -2.87 16 29 H 0.04 0.78 7.97 -51.93 -0.41 0.37 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.51 5.67 -51.93 -0.29 0.22 16 32 H 0.10 2.52 5.98 -51.93 -0.31 2.21 16 33 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.33 6.25 7.32 -39.29 -0.29 5.96 16 36 H 0.15 1.50 7.94 -52.49 -0.42 1.09 16 37 H 0.14 1.17 7.69 -52.49 -0.40 0.76 16 38 H 0.16 1.61 7.61 -52.49 -0.40 1.21 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.14 2.99 4.79 -51.93 -0.25 2.74 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.11 1.89 7.20 -51.93 -0.37 1.51 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -26.03 355.00 -8.15 -34.18 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.49 Total: 9.43 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -3.19 Total: -16.05 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.08 Total: -43.18 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.03 -8.15 -34.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.821 kcal (2) G-P(sol) polarization free energy of solvation -26.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds