Wall clock time and date at job start Tue Mar 31 2020 15:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 H 1.08994 * 109.47634 * 302.94509 * 3 2 1 5 5 C 1.50699 * 109.47057 * 182.94476 * 3 2 1 6 6 H 1.07999 * 120.00033 * 240.00553 * 5 3 2 7 7 C 1.37874 * 119.99991 * 59.72602 * 5 3 2 8 8 N 1.31517 * 120.00022 * 0.27455 * 7 5 3 9 9 Si 1.86806 * 120.00016 * 180.27794 * 7 5 3 10 10 H 1.48494 * 109.47396 * 60.00136 * 9 7 5 11 11 H 1.48502 * 109.47274 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47130 * 299.99870 * 9 7 5 13 13 N 1.46905 * 109.47176 * 62.94820 * 3 2 1 14 14 C 1.46898 * 110.99836 * 258.42216 * 13 3 2 15 15 H 1.09001 * 109.47012 * 23.03806 * 14 13 3 16 16 C 1.50695 * 109.47129 * 143.03894 * 14 13 3 17 17 C 1.38233 * 119.61861 * 240.58587 * 16 14 13 18 18 C 1.38630 * 119.15961 * 179.97438 * 17 16 14 19 19 C 1.38674 * 118.42359 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.42088 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47412 * 89.99989 * 20 19 18 22 22 F 1.39901 * 109.47021 * 210.00096 * 20 19 18 23 23 F 1.39898 * 109.47120 * 329.99833 * 20 19 18 24 24 C 1.38183 * 119.16275 * 359.97438 * 19 18 17 25 25 N 1.31854 * 119.62026 * 60.31450 * 16 14 13 26 26 C 1.53000 * 109.47252 * 263.03999 * 14 13 3 27 27 C 1.52999 * 117.49551 * 13.82072 * 26 14 13 28 28 C 1.53001 * 117.49794 * 305.19782 * 26 14 13 29 29 H 1.08997 * 109.47574 * 56.81050 * 1 2 3 30 30 H 1.09000 * 109.47030 * 176.81033 * 1 2 3 31 31 H 1.09001 * 109.47305 * 296.80843 * 1 2 3 32 32 H 1.09003 * 109.47257 * 240.00515 * 2 1 3 33 33 H 1.08997 * 109.47378 * 120.00022 * 2 1 3 34 34 H 0.96996 * 119.99811 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99558 * 22.37269 * 13 3 2 36 36 H 1.07996 * 120.42281 * 359.95963 * 17 16 14 37 37 H 1.08001 * 120.79139 * 180.02562 * 18 17 16 38 38 H 1.07995 * 119.62242 * 179.97438 * 24 19 18 39 39 H 1.09003 * 115.54949 * 159.52465 * 26 14 13 40 40 H 1.08999 * 117.50287 * 359.97438 * 27 26 14 41 41 H 1.08994 * 117.50072 * 145.02472 * 27 26 14 42 42 H 1.08997 * 117.49710 * 214.97737 * 28 26 14 43 43 H 1.08994 * 117.49810 * 359.97433 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6342 1.9714 -0.8623 5 6 3.5451 1.4432 -0.0730 6 1 4.1239 1.8971 0.7178 7 6 4.1835 0.8593 -1.1465 8 7 3.4787 0.3065 -2.1095 9 14 6.0496 0.8533 -1.2332 10 1 6.5975 0.1339 -0.0554 11 1 6.4851 0.1702 -2.4777 12 1 6.5495 2.2516 -1.2357 13 7 1.6092 2.1142 1.2335 14 6 0.4526 2.9844 0.9828 15 1 -0.0702 2.6452 0.0885 16 6 -0.4828 2.9290 2.1629 17 6 -1.7784 2.4802 1.9872 18 6 -2.6307 2.4327 3.0795 19 6 -2.1462 2.8407 4.3131 20 6 -3.0336 2.8071 5.5306 21 9 -2.9143 1.5637 6.1605 22 9 -2.6473 3.8181 6.4172 23 9 -4.3630 3.0086 5.1443 24 6 -0.8389 3.2776 4.4121 25 7 -0.0545 3.3042 3.3521 26 6 0.9316 4.4231 0.7786 27 6 2.4272 4.6429 0.5424 28 6 1.7967 5.0423 1.8781 29 1 -0.3634 0.5625 -0.8600 30 1 -0.3633 -1.0261 -0.0572 31 1 -0.3634 0.4635 0.9172 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9279 -0.1046 -2.8645 35 1 1.4061 1.4427 1.9587 36 1 -2.1224 2.1706 1.0114 37 1 -3.6480 2.0861 2.9724 38 1 -0.4540 3.5975 5.3691 39 1 0.2371 5.0799 0.2547 40 1 3.0699 3.7627 0.5329 41 1 2.7169 5.4444 -0.1369 42 1 1.6717 6.1066 2.0774 43 1 2.0243 4.4250 2.7470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:53 Heat of formation + Delta-G solvation = -99.322056 kcal Electronic energy + Delta-G solvation = -28778.457615 eV Core-core repulsion = 24409.033654 eV Total energy + Delta-G solvation = -4369.423961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.19821 -48.71094 -48.66528 -41.65832 -39.19543 -36.83891 -34.59607 -33.93866 -33.18119 -31.81079 -29.40133 -27.49530 -26.03019 -24.72065 -24.47276 -23.37517 -22.76127 -21.51821 -20.58510 -19.53824 -19.51956 -19.44718 -18.49680 -17.63377 -17.44820 -16.66433 -16.17315 -15.78219 -15.69910 -15.51907 -15.40617 -15.12134 -15.10895 -14.95816 -14.85556 -14.81857 -14.76157 -14.42555 -14.18239 -13.70570 -13.67786 -13.18203 -13.08480 -12.89778 -12.68925 -12.54380 -12.28073 -12.05584 -11.75501 -11.68346 -11.55528 -11.15530 -11.01933 -10.98453 -10.65086 -10.39933 -10.35282 -10.22041 -8.86745 -8.00540 -6.08229 -0.36238 0.14259 1.46370 1.46921 1.53899 1.57722 2.44500 2.51257 2.61543 2.94334 3.06150 3.26376 3.32536 3.37465 3.52302 3.69599 3.84489 4.02182 4.14699 4.18429 4.35107 4.47948 4.52600 4.55571 4.61280 4.70302 4.71741 4.82051 4.83084 4.96797 5.07919 5.10372 5.18454 5.28772 5.40301 5.42080 5.59996 5.68318 5.80382 5.89691 5.96653 6.40838 6.71626 6.84623 6.90350 7.03875 7.59719 9.02931 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.003224 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.984364 B = 8683.706461 C = 9207.253959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.144 4.144 3 C 0.233 3.767 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.659 5.659 14 C 0.166 3.834 15 H 0.062 0.938 16 C 0.156 3.844 17 C -0.169 4.169 18 C -0.017 4.017 19 C -0.250 4.250 20 C 0.524 3.476 21 F -0.179 7.179 22 F -0.176 7.176 23 F -0.176 7.176 24 C 0.148 3.852 25 N -0.471 5.471 26 C -0.154 4.154 27 C -0.181 4.181 28 C -0.141 4.141 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.257 0.743 35 H 0.326 0.674 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.557 5.511 11.850 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.125 3.875 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.289 5.289 14 C 0.055 3.945 15 H 0.080 0.920 16 C 0.019 3.981 17 C -0.189 4.189 18 C -0.043 4.043 19 C -0.253 4.253 20 C 0.469 3.531 21 F -0.160 7.160 22 F -0.157 7.157 23 F -0.157 7.157 24 C -0.011 4.011 25 N -0.179 5.179 26 C -0.173 4.173 27 C -0.218 4.218 28 C -0.178 4.178 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.197 0.803 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.208 6.214 11.718 19.437 hybrid contribution -0.476 -1.137 -0.433 1.306 sum -14.684 5.077 11.286 19.203 Atomic orbital electron populations 1.21793 0.96369 1.00904 1.00469 1.22073 0.94348 1.00889 1.01076 1.18988 0.93632 0.88786 0.86129 0.97676 1.21398 0.92613 1.34474 1.05114 0.92976 1.25540 1.01479 0.95669 0.95759 1.69970 1.36049 1.39447 1.10505 0.85799 0.81962 0.78036 0.76874 1.20270 1.21478 1.20137 1.60682 1.33017 1.25161 1.10060 1.20042 0.88837 0.93738 0.91870 0.91978 1.21723 0.92860 0.90586 0.92971 1.22238 0.93626 1.01641 1.01418 1.21629 1.01235 0.91559 0.89870 1.21099 0.97596 1.12033 0.94618 1.17938 0.78519 0.73645 0.82954 1.93236 1.95838 1.43007 1.83957 1.93201 1.90847 1.60756 1.70893 1.93195 1.36784 1.94768 1.90937 1.22995 0.88194 0.91416 0.98488 1.67741 1.36691 1.14614 0.98814 1.22234 0.94230 0.95645 1.05192 1.23052 0.95847 1.03331 0.99595 1.22668 1.02890 0.99401 0.92838 0.93669 0.93076 0.92978 0.91388 0.95333 0.93348 0.85596 0.82107 0.80998 0.80285 0.87971 0.87691 0.90475 0.89465 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 8.77 71.98 0.63 -4.08 16 2 C -0.14 -6.36 5.06 30.59 0.15 -6.20 16 3 C 0.23 10.74 1.64 44.17 0.07 10.81 16 4 H 0.01 0.28 7.35 -2.39 -0.02 0.26 16 5 C -0.50 -26.17 7.48 25.60 0.19 -25.98 16 6 H 0.05 2.82 7.44 -2.91 -0.02 2.80 16 7 C 0.01 0.72 5.29 84.65 0.45 1.17 16 8 N -0.92 -51.13 11.29 21.45 0.24 -50.89 16 9 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.66 -25.44 4.52 -477.17 -2.16 -27.59 16 14 C 0.17 5.35 1.73 44.17 0.08 5.43 16 15 H 0.06 2.05 6.17 -2.39 -0.01 2.03 16 16 C 0.16 4.19 4.94 42.55 0.21 4.40 16 17 C -0.17 -3.54 8.88 22.36 0.20 -3.34 16 18 C -0.02 -0.31 9.52 22.47 0.21 -0.09 16 19 C -0.25 -4.78 5.46 -19.77 -0.11 -4.89 16 20 C 0.52 9.35 3.38 71.23 0.24 9.59 16 21 F -0.18 -3.47 17.30 44.97 0.78 -2.70 16 22 F -0.18 -3.20 16.49 44.97 0.74 -2.46 16 23 F -0.18 -3.04 16.53 44.97 0.74 -2.30 16 24 C 0.15 3.22 10.57 84.67 0.89 4.11 16 25 N -0.47 -12.72 8.42 -183.89 -1.55 -14.27 16 26 C -0.15 -5.00 5.78 -10.79 -0.06 -5.06 16 27 C -0.18 -6.68 9.75 30.60 0.30 -6.38 16 28 C -0.14 -4.48 9.24 30.60 0.28 -4.20 16 29 H 0.04 1.53 7.97 -2.39 -0.02 1.51 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.56 5.67 -2.39 -0.01 1.54 16 32 H 0.07 3.48 5.98 -2.39 -0.01 3.47 16 33 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 34 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.33 12.49 7.32 -89.69 -0.66 11.84 16 36 H 0.16 2.80 7.94 -2.91 -0.02 2.78 16 37 H 0.17 2.02 7.69 -2.91 -0.02 2.00 16 38 H 0.18 3.16 7.61 -2.91 -0.02 3.14 16 39 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.10 4.68 4.79 -2.39 -0.01 4.67 16 41 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.10 3.33 7.20 -2.39 -0.02 3.32 16 Total: -1.00 -57.20 355.00 4.97 -52.23 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.40 Total: 27.12 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 3.74 Total: -24.69 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.46 Total: -92.76 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 2.26 Total: -7.46 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -57.20 4.97 -52.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.097 kcal (2) G-P(sol) polarization free energy of solvation -57.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds