Wall clock time and date at job start Tue Mar 31 2020 15:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 H 1.09000 * 109.47115 * 54.86952 * 3 2 1 5 5 C 1.50704 * 109.46870 * 174.86857 * 3 2 1 6 6 H 1.07994 * 119.99460 * 120.00200 * 5 3 2 7 7 C 1.37870 * 119.99930 * 300.00113 * 5 3 2 8 8 N 1.31520 * 120.00101 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00421 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.46935 * 89.99725 * 9 7 5 11 11 H 1.48502 * 109.47341 * 209.99700 * 9 7 5 12 12 H 1.48501 * 109.47036 * 330.00321 * 9 7 5 13 13 N 1.46893 * 109.47207 * 294.87052 * 3 2 1 14 14 C 1.46902 * 110.99827 * 156.80793 * 13 3 2 15 15 H 1.08997 * 109.47359 * 11.48705 * 14 13 3 16 16 C 1.50703 * 109.47107 * 131.48223 * 14 13 3 17 17 N 1.31888 * 119.61568 * 47.58257 * 16 14 13 18 18 C 1.31853 * 121.72432 * 179.71332 * 17 16 14 19 19 C 1.38228 * 120.76274 * 0.55847 * 18 17 16 20 20 C 1.38625 * 119.16361 * 359.73183 * 19 18 17 21 21 C 1.38185 * 119.62003 * 227.85491 * 16 14 13 22 22 C 1.50703 * 120.41434 * 0.02562 * 21 16 14 23 23 F 1.39903 * 109.46916 * 182.13249 * 22 21 16 24 24 F 1.39899 * 109.47002 * 302.12907 * 22 21 16 25 25 F 1.39894 * 109.47214 * 62.13241 * 22 21 16 26 26 C 1.52997 * 109.47489 * 251.48064 * 14 13 3 27 27 C 1.53001 * 117.50007 * 127.26459 * 26 14 13 28 28 C 1.53005 * 60.00221 * 252.51518 * 27 26 14 29 29 H 1.08999 * 109.47348 * 184.55111 * 1 2 3 30 30 H 1.09003 * 109.47175 * 304.56026 * 1 2 3 31 31 H 1.09000 * 109.46975 * 64.55188 * 1 2 3 32 32 H 1.09002 * 109.46836 * 240.00335 * 2 1 3 33 33 H 1.08997 * 109.46556 * 119.99942 * 2 1 3 34 34 H 0.96995 * 120.00423 * 179.97438 * 8 7 5 35 35 H 1.00896 * 111.00356 * 280.75908 * 13 3 2 36 36 H 1.08003 * 119.61773 * 180.31481 * 18 17 16 37 37 H 1.08002 * 120.41885 * 179.70425 * 19 18 17 38 38 H 1.08001 * 120.79219 * 179.97438 * 20 19 18 39 39 H 1.08998 * 115.55391 * 272.97870 * 26 14 13 40 40 H 1.09000 * 117.49476 * 359.97438 * 27 26 14 41 41 H 1.08994 * 117.50087 * 145.02357 * 27 26 14 42 42 H 1.08998 * 117.49983 * 252.51010 * 28 27 26 43 43 H 1.08997 * 117.52233 * 107.47559 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8405 5 6 3.5417 1.4444 0.1271 6 1 4.1486 1.8884 -0.6481 7 6 4.1406 0.8793 1.2329 8 7 5.4511 0.8804 1.3436 9 14 3.0909 0.1107 2.5733 10 1 2.8707 -1.3257 2.2671 11 1 3.7854 0.2375 3.8798 12 1 1.7820 0.8091 2.6386 13 7 1.6541 2.0983 -1.2565 14 6 1.6166 3.5583 -1.0983 15 1 2.0777 3.8330 -0.1497 16 6 2.3722 4.2058 -2.2302 17 7 2.1454 3.8192 -3.4706 18 6 2.7786 4.3609 -4.4924 19 6 3.7192 5.3544 -4.2951 20 6 3.9887 5.7829 -3.0046 21 6 3.2988 5.1936 -1.9559 22 6 3.5566 5.6245 -0.5350 23 9 4.4937 6.6632 -0.5255 24 9 2.3620 6.0690 0.0416 25 9 4.0535 4.5414 0.1979 26 6 0.1633 4.0362 -1.1163 27 6 -0.3059 4.9148 0.0451 28 6 -0.7815 3.4642 -0.0573 29 1 -0.3634 -1.0244 0.0815 30 1 -0.3634 0.5830 0.8463 31 1 -0.3633 0.4416 -0.9280 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8725 0.4832 2.1217 35 1 2.2721 1.8319 -2.0082 36 1 2.5626 4.0218 -5.4948 37 1 4.2380 5.7910 -5.1358 38 1 4.7188 6.5571 -2.8202 39 1 -0.2520 4.2416 -2.1029 40 1 0.4208 5.1521 0.8221 41 1 -1.0298 5.6987 -0.1774 42 1 -1.8183 3.2938 -0.3472 43 1 -0.3677 2.7472 0.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:10 Heat of formation + Delta-G solvation = -78.643727 kcal Electronic energy + Delta-G solvation = -30568.137823 eV Core-core repulsion = 26199.610542 eV Total energy + Delta-G solvation = -4368.527281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.86613 -47.44406 -47.14140 -40.47912 -37.74719 -35.48899 -33.11479 -33.01240 -31.92163 -30.65583 -27.45820 -26.10937 -25.38152 -22.90534 -22.42458 -22.25859 -21.85446 -19.94645 -19.74109 -18.29976 -18.15755 -18.02340 -17.10999 -16.48877 -16.04953 -15.32610 -14.84315 -14.66789 -14.41150 -14.14206 -14.06370 -13.87358 -13.75357 -13.65013 -13.40454 -13.33071 -13.23540 -12.97054 -12.86594 -12.47097 -12.19312 -11.71841 -11.65380 -11.38574 -11.24145 -11.10439 -11.06850 -10.63018 -10.22330 -10.07897 -9.90842 -9.87205 -9.64468 -9.55145 -9.30745 -9.23506 -9.06047 -8.52564 -7.37221 -6.08299 -4.08802 0.77614 1.12700 2.89946 3.27905 3.38852 3.40428 3.57920 3.92568 4.11492 4.21054 4.33531 4.40064 4.58079 4.71902 4.75404 5.01546 5.11257 5.24543 5.26652 5.33615 5.33753 5.61226 5.65795 5.71553 5.89436 5.94875 6.00703 6.08321 6.10275 6.21491 6.28326 6.33575 6.47765 6.54418 6.65725 6.73306 6.79972 7.01072 7.12681 7.28273 7.58211 7.85085 8.04492 8.39137 8.49525 8.93838 9.55059 11.04575 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.006186 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.825771 B = 4525.424953 C = 5133.804075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.182 3.818 4 H 0.033 0.967 5 C -0.541 4.541 6 H 0.071 0.929 7 C 0.076 3.924 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.654 5.654 14 C 0.158 3.842 15 H 0.083 0.917 16 C 0.192 3.808 17 N -0.464 5.464 18 C 0.128 3.872 19 C -0.187 4.187 20 C -0.030 4.030 21 C -0.228 4.228 22 C 0.505 3.495 23 F -0.185 7.185 24 F -0.174 7.174 25 F -0.142 7.142 26 C -0.125 4.125 27 C -0.190 4.190 28 C -0.159 4.159 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.342 0.658 36 H 0.163 0.837 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 10.624 -8.713 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.073 3.927 4 H 0.051 0.949 5 C -0.579 4.579 6 H 0.089 0.911 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.284 5.284 14 C 0.047 3.953 15 H 0.101 0.899 16 C 0.054 3.946 17 N -0.172 5.172 18 C -0.029 4.029 19 C -0.207 4.207 20 C -0.055 4.055 21 C -0.232 4.232 22 C 0.450 3.550 23 F -0.166 7.166 24 F -0.155 7.155 25 F -0.123 7.123 26 C -0.144 4.144 27 C -0.228 4.228 28 C -0.196 4.196 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.874 9.813 -8.605 15.243 hybrid contribution 1.463 0.467 1.099 1.889 sum -6.411 10.279 -7.506 14.252 Atomic orbital electron populations 1.21759 0.97415 0.99054 1.01721 1.21797 0.93974 0.99116 1.00381 1.19779 0.94442 0.90757 0.87763 0.94948 1.21675 0.90270 1.38928 1.07055 0.91111 1.24956 0.94674 0.95275 0.97767 1.69913 1.08856 1.44970 1.29508 0.86899 0.80764 0.79896 0.80934 1.20544 1.22691 1.18913 1.60762 1.56831 1.02226 1.08581 1.20257 0.91831 0.90240 0.93010 0.89936 1.21541 0.90204 0.89203 0.93697 1.67695 1.24943 1.26140 0.98400 1.23074 0.90420 0.90970 0.98450 1.22102 1.01017 1.00291 0.97244 1.21426 0.95618 0.96676 0.91830 1.20956 1.04832 1.04266 0.93166 1.18161 0.74292 0.75490 0.87098 1.93127 1.66498 1.60039 1.96950 1.93204 1.46233 1.89720 1.86376 1.93465 1.87162 1.53028 1.78662 1.22084 0.94558 1.03375 0.94401 1.23101 1.03897 0.94105 1.01648 1.22815 0.98602 0.95745 1.02423 0.95052 0.94103 0.91700 0.92408 0.93739 0.92770 0.83952 0.81946 0.83949 0.83624 0.88237 0.88757 0.89440 0.89464 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.66 37.16 0.36 -2.23 16 2 C -0.11 -2.48 5.11 -26.73 -0.14 -2.62 16 3 C 0.18 4.15 1.22 -68.87 -0.08 4.07 16 4 H 0.03 0.79 5.77 -51.93 -0.30 0.49 16 5 C -0.54 -14.59 8.82 -34.44 -0.30 -14.90 16 6 H 0.07 2.10 8.01 -52.49 -0.42 1.68 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 8 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 9 Si 0.88 22.01 24.41 -169.99 -4.15 17.86 16 10 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 12 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 13 N -0.65 -13.14 5.50 -102.17 -0.56 -13.71 16 14 C 0.16 2.91 1.72 -68.86 -0.12 2.80 16 15 H 0.08 1.71 3.86 -51.93 -0.20 1.51 16 16 C 0.19 3.29 5.33 -82.59 -0.44 2.85 16 17 N -0.46 -7.24 9.68 -9.47 -0.09 -7.33 16 18 C 0.13 1.53 11.18 -17.55 -0.20 1.33 16 19 C -0.19 -1.99 10.11 -39.44 -0.40 -2.39 16 20 C -0.03 -0.38 9.54 -39.28 -0.37 -0.75 16 21 C -0.23 -3.68 5.38 -104.48 -0.56 -4.25 16 22 C 0.50 8.72 2.78 36.01 0.10 8.82 16 23 F -0.18 -2.89 16.05 2.25 0.04 -2.86 16 24 F -0.17 -2.89 13.81 2.25 0.03 -2.86 16 25 F -0.14 -3.06 15.62 2.25 0.04 -3.03 16 26 C -0.12 -2.02 5.36 -90.62 -0.49 -2.51 16 27 C -0.19 -2.80 9.43 -26.73 -0.25 -3.06 16 28 C -0.16 -2.45 10.10 -26.72 -0.27 -2.72 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 31 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.04 1.03 3.21 -51.93 -0.17 0.86 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.34 7.23 7.44 -39.29 -0.29 6.94 16 36 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.15 1.53 7.26 -52.49 -0.38 1.15 16 39 H 0.10 1.57 8.10 -51.93 -0.42 1.15 16 40 H 0.09 1.48 6.73 -51.93 -0.35 1.13 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.10 1.73 6.07 -51.93 -0.32 1.41 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -30.14 349.34 -7.28 -37.41 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.35 Total: 9.01 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.26 Total: -13.48 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.12 Total: -47.33 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.10 Total: -8.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.14 -7.28 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.229 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds