Wall clock time and date at job start Tue Mar 31 2020 15:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 H 1.09000 * 109.47115 * 54.86952 * 3 2 1 5 5 C 1.50704 * 109.46870 * 174.86857 * 3 2 1 6 6 H 1.07994 * 119.99460 * 120.00200 * 5 3 2 7 7 C 1.37870 * 119.99930 * 300.00113 * 5 3 2 8 8 N 1.31520 * 120.00101 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00421 * 0.02562 * 7 5 3 10 10 H 1.48506 * 109.46935 * 89.99725 * 9 7 5 11 11 H 1.48502 * 109.47341 * 209.99700 * 9 7 5 12 12 H 1.48501 * 109.47036 * 330.00321 * 9 7 5 13 13 N 1.46893 * 109.47207 * 294.87052 * 3 2 1 14 14 C 1.46902 * 110.99827 * 156.80793 * 13 3 2 15 15 H 1.08997 * 109.47359 * 11.48705 * 14 13 3 16 16 C 1.50703 * 109.47107 * 131.48223 * 14 13 3 17 17 N 1.31888 * 119.61568 * 47.58257 * 16 14 13 18 18 C 1.31853 * 121.72432 * 179.71332 * 17 16 14 19 19 C 1.38228 * 120.76274 * 0.55847 * 18 17 16 20 20 C 1.38625 * 119.16361 * 359.73183 * 19 18 17 21 21 C 1.38185 * 119.62003 * 227.85491 * 16 14 13 22 22 C 1.50703 * 120.41434 * 0.02562 * 21 16 14 23 23 F 1.39903 * 109.46916 * 182.13249 * 22 21 16 24 24 F 1.39899 * 109.47002 * 302.12907 * 22 21 16 25 25 F 1.39894 * 109.47214 * 62.13241 * 22 21 16 26 26 C 1.52997 * 109.47489 * 251.48064 * 14 13 3 27 27 C 1.53001 * 117.50007 * 127.26459 * 26 14 13 28 28 C 1.53005 * 60.00221 * 252.51518 * 27 26 14 29 29 H 1.08999 * 109.47348 * 184.55111 * 1 2 3 30 30 H 1.09003 * 109.47175 * 304.56026 * 1 2 3 31 31 H 1.09000 * 109.46975 * 64.55188 * 1 2 3 32 32 H 1.09002 * 109.46836 * 240.00335 * 2 1 3 33 33 H 1.08997 * 109.46556 * 119.99942 * 2 1 3 34 34 H 0.96995 * 120.00423 * 179.97438 * 8 7 5 35 35 H 1.00896 * 111.00356 * 280.75908 * 13 3 2 36 36 H 1.08003 * 119.61773 * 180.31481 * 18 17 16 37 37 H 1.08002 * 120.41885 * 179.70425 * 19 18 17 38 38 H 1.08001 * 120.79219 * 179.97438 * 20 19 18 39 39 H 1.08998 * 115.55391 * 272.97870 * 26 14 13 40 40 H 1.09000 * 117.49476 * 359.97438 * 27 26 14 41 41 H 1.08994 * 117.50087 * 145.02357 * 27 26 14 42 42 H 1.08998 * 117.49983 * 252.51010 * 28 27 26 43 43 H 1.08997 * 117.52233 * 107.47559 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6036 1.9822 0.8405 5 6 3.5417 1.4444 0.1271 6 1 4.1486 1.8884 -0.6481 7 6 4.1406 0.8793 1.2329 8 7 5.4511 0.8804 1.3436 9 14 3.0909 0.1107 2.5733 10 1 2.8707 -1.3257 2.2671 11 1 3.7854 0.2375 3.8798 12 1 1.7820 0.8091 2.6386 13 7 1.6541 2.0983 -1.2565 14 6 1.6166 3.5583 -1.0983 15 1 2.0777 3.8330 -0.1497 16 6 2.3722 4.2058 -2.2302 17 7 2.1454 3.8192 -3.4706 18 6 2.7786 4.3609 -4.4924 19 6 3.7192 5.3544 -4.2951 20 6 3.9887 5.7829 -3.0046 21 6 3.2988 5.1936 -1.9559 22 6 3.5566 5.6245 -0.5350 23 9 4.4937 6.6632 -0.5255 24 9 2.3620 6.0690 0.0416 25 9 4.0535 4.5414 0.1979 26 6 0.1633 4.0362 -1.1163 27 6 -0.3059 4.9148 0.0451 28 6 -0.7815 3.4642 -0.0573 29 1 -0.3634 -1.0244 0.0815 30 1 -0.3634 0.5830 0.8463 31 1 -0.3633 0.4416 -0.9280 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8725 0.4832 2.1217 35 1 2.2721 1.8319 -2.0082 36 1 2.5626 4.0218 -5.4948 37 1 4.2380 5.7910 -5.1358 38 1 4.7188 6.5571 -2.8202 39 1 -0.2520 4.2416 -2.1029 40 1 0.4208 5.1521 0.8221 41 1 -1.0298 5.6987 -0.1774 42 1 -1.8183 3.2938 -0.3472 43 1 -0.3677 2.7472 0.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161983.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:10 Heat of formation + Delta-G solvation = -97.678239 kcal Electronic energy + Delta-G solvation = -30568.963222 eV Core-core repulsion = 26199.610542 eV Total energy + Delta-G solvation = -4369.352680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.25850 -48.78240 -48.63437 -41.59119 -39.13263 -37.08713 -34.53351 -34.12591 -33.88356 -32.00245 -29.14307 -27.48233 -26.79687 -24.31991 -23.97013 -23.40729 -23.08936 -21.69630 -21.07955 -19.63508 -19.49017 -19.42128 -18.98713 -17.76258 -17.27248 -17.00762 -16.25711 -15.94734 -15.76409 -15.53421 -15.42307 -15.33103 -15.07572 -15.03784 -15.02930 -14.79891 -14.66158 -14.53935 -14.10452 -13.94794 -13.67139 -13.44399 -13.23642 -13.01897 -12.71826 -12.55801 -12.40466 -12.30449 -12.01943 -11.52330 -11.33516 -11.22329 -11.14247 -11.08176 -10.95719 -10.68473 -10.52576 -10.16743 -9.07380 -8.28998 -6.31685 -0.29689 0.10490 1.27480 1.32969 1.42312 1.59726 2.30264 2.52119 2.64188 2.87191 2.93634 3.06259 3.14203 3.35853 3.42648 3.83373 3.83932 4.00787 4.05576 4.17235 4.27245 4.30602 4.36984 4.44311 4.48692 4.61283 4.70942 4.79848 4.85047 4.91068 4.96132 4.98241 5.08003 5.18972 5.33416 5.33485 5.39174 5.49521 5.52135 5.53873 5.67183 6.10851 6.40466 6.61275 6.79127 6.84717 7.35466 8.87219 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.006186 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.825771 B = 4525.424953 C = 5133.804075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C 0.192 3.808 4 H 0.022 0.978 5 C -0.527 4.527 6 H 0.031 0.969 7 C 0.020 3.980 8 N -0.943 5.943 9 Si 0.939 3.061 10 H -0.266 1.266 11 H -0.304 1.304 12 H -0.249 1.249 13 N -0.641 5.641 14 C 0.157 3.843 15 H 0.053 0.947 16 C 0.168 3.832 17 N -0.485 5.485 18 C 0.125 3.875 19 C -0.164 4.164 20 C -0.036 4.036 21 C -0.250 4.250 22 C 0.502 3.498 23 F -0.177 7.177 24 F -0.173 7.173 25 F -0.177 7.177 26 C -0.130 4.130 27 C -0.179 4.179 28 C -0.156 4.156 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.333 0.667 36 H 0.203 0.797 37 H 0.191 0.809 38 H 0.167 0.833 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 11.267 -10.665 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.040 0.960 5 C -0.566 4.566 6 H 0.049 0.951 7 C -0.178 4.178 8 N -0.583 5.583 9 Si 0.767 3.233 10 H -0.192 1.192 11 H -0.232 1.232 12 H -0.173 1.173 13 N -0.270 5.270 14 C 0.046 3.954 15 H 0.071 0.929 16 C 0.030 3.970 17 N -0.194 5.194 18 C -0.032 4.032 19 C -0.183 4.183 20 C -0.062 4.062 21 C -0.254 4.254 22 C 0.448 3.552 23 F -0.158 7.158 24 F -0.154 7.154 25 F -0.158 7.158 26 C -0.149 4.149 27 C -0.217 4.217 28 C -0.194 4.194 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.151 0.849 36 H 0.220 0.780 37 H 0.208 0.792 38 H 0.185 0.815 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.898 10.470 -10.567 17.867 hybrid contribution 2.168 0.399 1.544 2.692 sum -7.730 10.869 -9.023 16.103 Atomic orbital electron populations 1.21650 0.94303 1.00679 1.02227 1.21737 0.96734 0.97404 0.99521 1.19583 0.91345 0.92052 0.88816 0.96046 1.21903 0.92395 1.36855 1.05437 0.95112 1.25728 0.95623 0.96266 1.00218 1.70059 1.10721 1.47082 1.30484 0.85997 0.79707 0.79761 0.77810 1.19219 1.23193 1.17258 1.60790 1.55721 1.03687 1.06755 1.20172 0.93487 0.89038 0.92707 0.92932 1.21269 0.91279 0.90352 0.94079 1.67653 1.26280 1.27030 0.98412 1.23831 0.89719 0.90585 0.99038 1.22620 0.99524 0.98627 0.97528 1.21822 0.95453 0.96940 0.91952 1.20983 1.06137 1.05497 0.92828 1.18390 0.74260 0.74863 0.87733 1.93126 1.66261 1.59445 1.96958 1.93191 1.46072 1.89589 1.86560 1.93389 1.87696 1.54966 1.79726 1.21997 0.93257 1.04535 0.95149 1.23121 1.03688 0.94586 1.00265 1.22830 0.99492 0.95570 1.01462 0.92785 0.93832 0.91022 0.92786 0.95073 0.92920 0.84917 0.78034 0.79217 0.81528 0.87493 0.90351 0.86805 0.87027 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.66 71.98 0.70 -3.80 16 2 C -0.12 -4.94 5.11 30.60 0.16 -4.79 16 3 C 0.19 8.92 1.22 44.17 0.05 8.98 16 4 H 0.02 1.06 5.77 -2.39 -0.01 1.05 16 5 C -0.53 -29.69 8.82 25.60 0.23 -29.46 16 6 H 0.03 1.94 8.01 -2.91 -0.02 1.92 16 7 C 0.02 1.16 5.45 84.65 0.46 1.62 16 8 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 9 Si 0.94 46.19 24.41 68.60 1.67 47.87 16 10 H -0.27 -12.47 6.83 99.48 0.68 -11.79 16 11 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 12 H -0.25 -11.46 6.53 99.48 0.65 -10.81 16 13 N -0.64 -26.15 5.50 -477.16 -2.62 -28.78 16 14 C 0.16 5.91 1.72 44.17 0.08 5.99 16 15 H 0.05 2.30 3.86 -2.39 -0.01 2.29 16 16 C 0.17 5.79 5.33 42.54 0.23 6.02 16 17 N -0.48 -14.57 9.68 -183.88 -1.78 -16.35 16 18 C 0.13 2.60 11.18 84.69 0.95 3.55 16 19 C -0.16 -2.88 10.11 22.36 0.23 -2.65 16 20 C -0.04 -0.86 9.54 22.47 0.21 -0.64 16 21 C -0.25 -8.12 5.38 -19.77 -0.11 -8.23 16 22 C 0.50 18.03 2.78 71.24 0.20 18.23 16 23 F -0.18 -5.62 16.05 44.97 0.72 -4.89 16 24 F -0.17 -5.94 13.81 44.97 0.62 -5.32 16 25 F -0.18 -8.15 15.62 44.97 0.70 -7.44 16 26 C -0.13 -4.12 5.36 -10.79 -0.06 -4.18 16 27 C -0.18 -5.11 9.43 30.60 0.29 -4.82 16 28 C -0.16 -4.62 10.10 30.60 0.31 -4.31 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.46 7.31 -2.39 -0.02 1.44 16 31 H 0.07 2.35 7.88 -2.39 -0.02 2.33 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.03 1.41 3.21 -2.39 -0.01 1.40 16 34 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 35 H 0.33 14.48 7.44 -89.70 -0.67 13.82 16 36 H 0.20 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.17 3.13 7.26 -2.91 -0.02 3.11 16 39 H 0.11 3.23 8.10 -2.39 -0.02 3.21 16 40 H 0.08 2.49 6.73 -2.39 -0.02 2.48 16 41 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.08 2.66 6.07 -2.39 -0.01 2.65 16 Total: -1.00 -69.77 349.34 3.84 -65.93 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 0.31 Total: 26.77 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 3.91 Total: -18.51 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.11 Total: -104.40 kcal Atomic # 9 Polarization: -19.71 SS G_CDS: 2.05 Total: -17.66 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.87 kcal Total: -69.77 3.84 -65.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161983.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.751 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds