Wall clock time and date at job start Tue Mar 31 2020 15:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 H 1.08999 * 109.47045 * 301.79946 * 3 2 1 5 5 C 1.50700 * 109.47175 * 181.80110 * 3 2 1 6 6 H 1.08004 * 120.00288 * 244.95301 * 5 3 2 7 7 C 1.37886 * 120.00063 * 64.96034 * 5 3 2 8 8 N 1.31511 * 119.99746 * 6.04232 * 7 5 3 9 9 Si 1.86795 * 119.99920 * 186.04376 * 7 5 3 10 10 H 1.48501 * 109.46812 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47327 * 299.99563 * 9 7 5 12 12 H 1.48496 * 109.47064 * 59.99978 * 9 7 5 13 13 N 1.46900 * 109.47289 * 61.80343 * 3 2 1 14 14 C 1.46905 * 111.00002 * 209.41258 * 13 3 2 15 15 H 1.09003 * 109.46735 * 329.43082 * 14 13 3 16 16 C 1.50698 * 109.47345 * 209.43092 * 14 13 3 17 17 N 1.31884 * 119.61182 * 319.44770 * 16 14 13 18 18 C 1.31855 * 121.72476 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.76437 * 359.97438 * 18 17 16 20 20 C 1.38628 * 119.15678 * 0.02562 * 19 18 17 21 21 C 1.38177 * 119.61849 * 139.16992 * 16 14 13 22 22 C 1.50696 * 120.42145 * 0.02562 * 21 16 14 23 23 F 1.39900 * 109.47183 * 183.55597 * 22 21 16 24 24 F 1.39900 * 109.47194 * 303.56160 * 22 21 16 25 25 F 1.39902 * 109.46632 * 63.55745 * 22 21 16 26 26 C 1.53003 * 109.47212 * 89.42582 * 14 13 3 27 27 C 1.53000 * 117.49609 * 129.29563 * 26 14 13 28 28 C 1.52999 * 117.49710 * 60.64087 * 26 14 13 29 29 H 1.09002 * 109.46821 * 64.94548 * 1 2 3 30 30 H 1.09000 * 109.46904 * 184.94692 * 1 2 3 31 31 H 1.08997 * 109.47359 * 304.94619 * 1 2 3 32 32 H 1.08997 * 109.47146 * 239.99301 * 2 1 3 33 33 H 1.09003 * 109.47039 * 119.99786 * 2 1 3 34 34 H 0.97001 * 120.00383 * 355.29890 * 8 7 5 35 35 H 1.00893 * 111.00311 * 85.45356 * 13 3 2 36 36 H 1.08004 * 119.62227 * 179.97438 * 18 17 16 37 37 H 1.07995 * 120.41869 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.78632 * 180.02562 * 20 19 18 39 39 H 1.08994 * 115.55392 * 274.96934 * 26 14 13 40 40 H 1.08999 * 117.49966 * 0.02562 * 27 26 14 41 41 H 1.09005 * 117.49544 * 145.02114 * 27 26 14 42 42 H 1.08994 * 117.49913 * 214.98006 * 28 26 14 43 43 H 1.09005 * 117.50193 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6505 1.9655 -0.8734 5 6 3.5463 1.4427 -0.0447 6 1 4.1113 1.8298 0.7904 7 6 4.2033 0.9487 -1.1517 8 7 3.5194 0.5879 -2.2155 9 14 6.0647 0.7921 -1.1405 10 1 6.5226 0.2387 -2.4402 11 1 6.6728 2.1304 -0.9300 12 1 6.4782 -0.1178 -0.0422 13 7 1.5863 2.1223 1.2206 14 6 1.4169 3.5630 0.9888 15 1 2.1257 3.8947 0.2301 16 6 1.6683 4.3114 2.2725 17 7 1.2125 3.8249 3.4104 18 6 1.4089 4.4446 4.5576 19 6 2.1066 5.6369 4.6067 20 6 2.6010 6.1791 3.4306 21 6 2.3787 5.4962 2.2443 22 6 2.9008 6.0420 0.9403 23 9 3.6491 7.1985 1.1851 24 9 3.7124 5.0830 0.3249 25 9 1.8256 6.3513 0.1004 26 6 -0.0097 3.8382 0.5090 27 6 -0.8010 4.9283 1.2345 28 6 -1.1565 3.4546 1.4463 29 1 -0.3633 0.4352 -0.9310 30 1 -0.3633 -1.0239 0.0886 31 1 -0.3634 0.5886 0.8423 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5498 0.6047 -2.1975 35 1 2.2202 1.9513 1.9867 36 1 1.0201 4.0157 5.4694 37 1 2.2645 6.1396 5.5495 38 1 3.1501 7.1091 3.4386 39 1 -0.1756 3.7242 -0.5622 40 1 -0.3052 5.4497 2.0533 41 1 -1.4879 5.5313 0.6405 42 1 -2.0771 3.0886 0.9917 43 1 -0.8948 3.0058 2.4046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:17 Heat of formation + Delta-G solvation = -85.033541 kcal Electronic energy + Delta-G solvation = -30399.458162 eV Core-core repulsion = 26030.653798 eV Total energy + Delta-G solvation = -4368.804364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.04718 -47.59432 -47.38726 -40.74909 -37.62723 -35.63220 -33.15283 -32.94597 -31.63914 -30.59708 -27.03749 -26.13842 -24.85265 -23.07970 -22.86758 -22.51303 -21.84381 -19.96632 -19.29998 -18.46096 -18.28031 -18.21115 -17.12094 -16.50587 -16.18641 -15.79723 -14.75636 -14.57381 -14.34533 -14.26431 -14.00598 -13.86612 -13.75153 -13.62408 -13.55429 -13.49177 -13.31976 -13.05683 -12.96052 -12.44959 -12.06326 -11.84136 -11.61497 -11.35554 -11.16191 -10.94604 -10.66840 -10.37847 -10.19590 -10.12803 -10.06656 -9.77393 -9.67407 -9.65512 -9.44534 -9.21309 -8.83219 -8.26870 -7.26388 -6.28584 -4.07297 0.64895 1.02152 2.73014 3.44055 3.44654 3.47813 3.63239 3.76327 4.05347 4.08059 4.29641 4.48448 4.54106 4.55079 4.62097 4.90102 5.05857 5.17214 5.24008 5.30615 5.38581 5.43913 5.61685 5.77323 5.85241 5.89400 6.02647 6.18928 6.25469 6.30727 6.35599 6.41165 6.46418 6.55822 6.73733 6.89896 7.02490 7.25258 7.36139 7.60160 7.79475 7.97990 8.06845 8.46151 8.63038 8.86656 9.65637 11.03834 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.006027 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.957922 B = 4644.513874 C = 5745.547616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.203 3.797 4 H 0.025 0.975 5 C -0.623 4.623 6 H 0.046 0.954 7 C 0.029 3.971 8 N -0.908 5.908 9 Si 1.058 2.942 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.654 5.654 14 C 0.150 3.850 15 H 0.080 0.920 16 C 0.201 3.799 17 N -0.455 5.455 18 C 0.129 3.871 19 C -0.188 4.188 20 C -0.030 4.030 21 C -0.238 4.238 22 C 0.510 3.490 23 F -0.183 7.183 24 F -0.156 7.156 25 F -0.170 7.170 26 C -0.124 4.124 27 C -0.190 4.190 28 C -0.151 4.151 29 H 0.034 0.966 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.273 0.727 35 H 0.334 0.666 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 11.925 12.017 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.043 0.957 5 C -0.662 4.662 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.544 5.544 9 Si 0.887 3.113 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.284 5.284 14 C 0.040 3.960 15 H 0.097 0.903 16 C 0.063 3.937 17 N -0.163 5.163 18 C -0.029 4.029 19 C -0.208 4.208 20 C -0.055 4.055 21 C -0.242 4.242 22 C 0.455 3.545 23 F -0.164 7.164 24 F -0.137 7.137 25 F -0.151 7.151 26 C -0.144 4.144 27 C -0.228 4.228 28 C -0.188 4.188 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.100 10.559 10.906 16.014 hybrid contribution 0.357 1.697 0.777 1.900 sum -4.742 12.256 11.683 17.584 Atomic orbital electron populations 1.21724 0.98131 0.98873 1.01034 1.21535 0.93048 0.99195 1.00700 1.19315 0.93278 0.90622 0.87314 0.95734 1.22575 0.92047 1.45789 1.05807 0.93621 1.25620 1.06515 0.93514 0.92055 1.70791 1.09594 1.45467 1.28581 0.83694 0.75076 0.76480 0.76022 1.20743 1.21581 1.21505 1.60755 1.53850 1.04596 1.09202 1.20286 0.95633 0.90692 0.89437 0.90283 1.21430 0.87662 0.89193 0.95425 1.67823 1.18806 1.32294 0.97387 1.23157 0.92193 0.91021 0.96496 1.22116 1.01438 0.98430 0.98833 1.21410 0.94545 0.98657 0.90936 1.20949 1.08502 1.00893 0.93838 1.18087 0.75923 0.75565 0.84934 1.93135 1.77659 1.51267 1.94361 1.93324 1.73413 1.62685 1.84260 1.93243 1.55309 1.93084 1.73469 1.22091 0.91781 1.02704 0.97795 1.22970 1.04290 0.92463 1.03071 1.22799 0.98150 0.95563 1.02297 0.94689 0.95507 0.91864 0.92097 0.93944 0.91469 0.84772 0.81918 0.83939 0.83627 0.87854 0.90300 0.89442 0.89824 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.84 37.16 0.37 -2.41 16 2 C -0.11 -2.46 5.30 -26.73 -0.14 -2.60 16 3 C 0.20 4.91 1.45 -68.87 -0.10 4.81 16 4 H 0.02 0.66 7.25 -51.93 -0.38 0.28 16 5 C -0.62 -16.93 8.45 -34.44 -0.29 -17.22 16 6 H 0.05 1.26 7.64 -52.48 -0.40 0.86 16 7 C 0.03 0.81 5.24 -17.82 -0.09 0.71 16 8 N -0.91 -26.80 13.10 55.43 0.73 -26.08 16 9 Si 1.06 25.34 29.91 -169.99 -5.08 20.25 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.65 -13.57 5.02 -102.17 -0.51 -14.08 16 14 C 0.15 2.84 1.82 -68.86 -0.13 2.71 16 15 H 0.08 1.71 4.55 -51.93 -0.24 1.48 16 16 C 0.20 3.28 3.24 -82.59 -0.27 3.01 16 17 N -0.46 -6.73 8.46 -9.47 -0.08 -6.81 16 18 C 0.13 1.42 11.18 -17.54 -0.20 1.22 16 19 C -0.19 -1.79 10.11 -39.44 -0.40 -2.19 16 20 C -0.03 -0.34 9.54 -39.28 -0.37 -0.71 16 21 C -0.24 -3.54 5.16 -104.48 -0.54 -4.08 16 22 C 0.51 8.19 2.79 36.00 0.10 8.29 16 23 F -0.18 -2.60 16.06 2.25 0.04 -2.56 16 24 F -0.16 -3.04 15.16 2.25 0.03 -3.00 16 25 F -0.17 -2.76 16.42 2.25 0.04 -2.73 16 26 C -0.12 -2.13 5.83 -90.62 -0.53 -2.66 16 27 C -0.19 -2.78 9.70 -26.70 -0.26 -3.04 16 28 C -0.15 -2.31 9.80 -26.70 -0.26 -2.57 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.22 7.51 -51.93 -0.39 0.83 16 32 H 0.06 1.55 6.08 -51.93 -0.32 1.24 16 33 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.27 8.00 5.73 -40.82 -0.23 7.77 16 35 H 0.33 7.25 7.63 -39.30 -0.30 6.95 16 36 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.32 7.27 -52.49 -0.38 0.94 16 39 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.08 1.17 6.27 -51.93 -0.33 0.85 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.11 1.76 7.10 -51.93 -0.37 1.39 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -29.55 356.90 -8.08 -37.64 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.51 Total: 8.72 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -3.11 Total: -16.72 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.13 Total: -46.97 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 0.11 Total: -8.29 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.55 -8.08 -37.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.398 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds