Wall clock time and date at job start Tue Mar 31 2020 15:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 H 1.08999 * 109.47045 * 301.79946 * 3 2 1 5 5 C 1.50700 * 109.47175 * 181.80110 * 3 2 1 6 6 H 1.08004 * 120.00288 * 244.95301 * 5 3 2 7 7 C 1.37886 * 120.00063 * 64.96034 * 5 3 2 8 8 N 1.31511 * 119.99746 * 6.04232 * 7 5 3 9 9 Si 1.86795 * 119.99920 * 186.04376 * 7 5 3 10 10 H 1.48501 * 109.46812 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47327 * 299.99563 * 9 7 5 12 12 H 1.48496 * 109.47064 * 59.99978 * 9 7 5 13 13 N 1.46900 * 109.47289 * 61.80343 * 3 2 1 14 14 C 1.46905 * 111.00002 * 209.41258 * 13 3 2 15 15 H 1.09003 * 109.46735 * 329.43082 * 14 13 3 16 16 C 1.50698 * 109.47345 * 209.43092 * 14 13 3 17 17 N 1.31884 * 119.61182 * 319.44770 * 16 14 13 18 18 C 1.31855 * 121.72476 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.76437 * 359.97438 * 18 17 16 20 20 C 1.38628 * 119.15678 * 0.02562 * 19 18 17 21 21 C 1.38177 * 119.61849 * 139.16992 * 16 14 13 22 22 C 1.50696 * 120.42145 * 0.02562 * 21 16 14 23 23 F 1.39900 * 109.47183 * 183.55597 * 22 21 16 24 24 F 1.39900 * 109.47194 * 303.56160 * 22 21 16 25 25 F 1.39902 * 109.46632 * 63.55745 * 22 21 16 26 26 C 1.53003 * 109.47212 * 89.42582 * 14 13 3 27 27 C 1.53000 * 117.49609 * 129.29563 * 26 14 13 28 28 C 1.52999 * 117.49710 * 60.64087 * 26 14 13 29 29 H 1.09002 * 109.46821 * 64.94548 * 1 2 3 30 30 H 1.09000 * 109.46904 * 184.94692 * 1 2 3 31 31 H 1.08997 * 109.47359 * 304.94619 * 1 2 3 32 32 H 1.08997 * 109.47146 * 239.99301 * 2 1 3 33 33 H 1.09003 * 109.47039 * 119.99786 * 2 1 3 34 34 H 0.97001 * 120.00383 * 355.29890 * 8 7 5 35 35 H 1.00893 * 111.00311 * 85.45356 * 13 3 2 36 36 H 1.08004 * 119.62227 * 179.97438 * 18 17 16 37 37 H 1.07995 * 120.41869 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.78632 * 180.02562 * 20 19 18 39 39 H 1.08994 * 115.55392 * 274.96934 * 26 14 13 40 40 H 1.08999 * 117.49966 * 0.02562 * 27 26 14 41 41 H 1.09005 * 117.49544 * 145.02114 * 27 26 14 42 42 H 1.08994 * 117.49913 * 214.98006 * 28 26 14 43 43 H 1.09005 * 117.50193 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6505 1.9655 -0.8734 5 6 3.5463 1.4427 -0.0447 6 1 4.1113 1.8298 0.7904 7 6 4.2033 0.9487 -1.1517 8 7 3.5194 0.5879 -2.2155 9 14 6.0647 0.7921 -1.1405 10 1 6.5226 0.2387 -2.4402 11 1 6.6728 2.1304 -0.9300 12 1 6.4782 -0.1178 -0.0422 13 7 1.5863 2.1223 1.2206 14 6 1.4169 3.5630 0.9888 15 1 2.1257 3.8947 0.2301 16 6 1.6683 4.3114 2.2725 17 7 1.2125 3.8249 3.4104 18 6 1.4089 4.4446 4.5576 19 6 2.1066 5.6369 4.6067 20 6 2.6010 6.1791 3.4306 21 6 2.3787 5.4962 2.2443 22 6 2.9008 6.0420 0.9403 23 9 3.6491 7.1985 1.1851 24 9 3.7124 5.0830 0.3249 25 9 1.8256 6.3513 0.1004 26 6 -0.0097 3.8382 0.5090 27 6 -0.8010 4.9283 1.2345 28 6 -1.1565 3.4546 1.4463 29 1 -0.3633 0.4352 -0.9310 30 1 -0.3633 -1.0239 0.0886 31 1 -0.3634 0.5886 0.8423 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5498 0.6047 -2.1975 35 1 2.2202 1.9513 1.9867 36 1 1.0201 4.0157 5.4694 37 1 2.2645 6.1396 5.5495 38 1 3.1501 7.1091 3.4386 39 1 -0.1756 3.7242 -0.5622 40 1 -0.3052 5.4497 2.0533 41 1 -1.4879 5.5313 0.6405 42 1 -2.0771 3.0886 0.9917 43 1 -0.8948 3.0058 2.4046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:16 Heat of formation + Delta-G solvation = -101.567662 kcal Electronic energy + Delta-G solvation = -30400.175136 eV Core-core repulsion = 26030.653798 eV Total energy + Delta-G solvation = -4369.521338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.32942 -48.84771 -48.72962 -41.80805 -39.00909 -37.34782 -34.48252 -34.15892 -33.37254 -32.04209 -28.63617 -27.31889 -26.54011 -24.82574 -24.15373 -23.63663 -23.04981 -21.68036 -20.75904 -19.72660 -19.58046 -19.36395 -19.12635 -17.62703 -17.37476 -17.00269 -16.25746 -15.87362 -15.69759 -15.60293 -15.54498 -15.23558 -15.12451 -15.09972 -14.89941 -14.85782 -14.75093 -14.34934 -14.19800 -13.93904 -13.72588 -13.37672 -13.23425 -12.84615 -12.62384 -12.38368 -12.33635 -12.18358 -12.01119 -11.69889 -11.56389 -11.20853 -11.14700 -10.98063 -10.81049 -10.52435 -10.42032 -10.20378 -9.10371 -8.48098 -6.31836 -0.33205 0.10197 1.46762 1.53406 1.53603 1.72446 2.51076 2.53525 2.58607 2.84028 2.88842 3.10828 3.20236 3.27844 3.40519 3.74334 3.83743 3.94322 4.00651 4.05189 4.27974 4.35243 4.43805 4.45909 4.56055 4.62082 4.72487 4.79180 4.79828 4.89050 4.97517 4.98179 5.07060 5.17842 5.25034 5.42064 5.43944 5.49199 5.54146 5.71476 5.96356 5.99165 6.47705 6.60009 6.76351 6.87120 7.48691 8.78961 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.006027 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.957922 B = 4644.513874 C = 5745.547616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C 0.213 3.787 4 H -0.008 1.008 5 C -0.626 4.626 6 H 0.036 0.964 7 C -0.020 4.020 8 N -0.932 5.932 9 Si 1.099 2.901 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.270 1.270 13 N -0.640 5.640 14 C 0.153 3.847 15 H 0.042 0.958 16 C 0.180 3.820 17 N -0.478 5.478 18 C 0.125 3.875 19 C -0.161 4.161 20 C -0.030 4.030 21 C -0.253 4.253 22 C 0.506 3.494 23 F -0.172 7.172 24 F -0.184 7.184 25 F -0.176 7.176 26 C -0.150 4.150 27 C -0.165 4.165 28 C -0.138 4.138 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.328 0.672 36 H 0.200 0.800 37 H 0.191 0.809 38 H 0.171 0.829 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 13.214 15.359 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 C 0.104 3.896 4 H 0.010 0.990 5 C -0.665 4.665 6 H 0.054 0.946 7 C -0.220 4.220 8 N -0.570 5.570 9 Si 0.923 3.077 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.268 5.268 14 C 0.042 3.958 15 H 0.060 0.940 16 C 0.043 3.957 17 N -0.186 5.186 18 C -0.032 4.032 19 C -0.180 4.180 20 C -0.056 4.056 21 C -0.257 4.257 22 C 0.452 3.548 23 F -0.153 7.153 24 F -0.166 7.166 25 F -0.158 7.158 26 C -0.170 4.170 27 C -0.203 4.203 28 C -0.176 4.176 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.217 0.783 37 H 0.208 0.792 38 H 0.188 0.812 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.571 11.863 14.264 19.371 hybrid contribution 0.483 1.400 -0.158 1.489 sum -5.088 13.263 14.107 20.020 Atomic orbital electron populations 1.21568 0.95252 1.00385 1.01090 1.21387 0.95561 0.97879 0.99009 1.19061 0.91641 0.91266 0.87673 0.99029 1.22872 0.93783 1.44673 1.05194 0.94571 1.26876 1.10144 0.93126 0.91859 1.70889 1.09110 1.47471 1.29501 0.83161 0.70884 0.77184 0.76504 1.20771 1.20611 1.19561 1.60708 1.52606 1.06341 1.07149 1.20077 0.95686 0.89308 0.90695 0.94035 1.20882 0.90015 0.89975 0.94860 1.67739 1.19604 1.33329 0.97949 1.23860 0.91650 0.91429 0.96220 1.22625 0.98384 0.97209 0.99823 1.21805 0.94393 0.99262 0.90133 1.20918 1.09403 1.01270 0.94142 1.18355 0.75561 0.75438 0.85493 1.93141 1.77429 1.50507 1.94246 1.93261 1.74307 1.64026 1.84990 1.93218 1.55502 1.93090 1.73946 1.21949 0.91812 1.06090 0.97123 1.22968 1.02932 0.92089 1.02263 1.22785 0.97388 0.96159 1.01221 0.95072 0.93274 0.91189 0.94892 0.94320 0.92612 0.85527 0.78293 0.79180 0.81157 0.89927 0.90000 0.87849 0.88561 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.84 71.98 0.71 -4.28 16 2 C -0.10 -4.77 5.30 30.59 0.16 -4.61 16 3 C 0.21 10.82 1.45 44.17 0.06 10.88 16 4 H -0.01 -0.47 7.25 -2.39 -0.02 -0.49 16 5 C -0.63 -35.43 8.45 25.60 0.22 -35.21 16 6 H 0.04 2.07 7.64 -2.91 -0.02 2.05 16 7 C -0.02 -1.16 5.24 84.66 0.44 -0.71 16 8 N -0.93 -57.31 13.10 21.45 0.28 -57.03 16 9 Si 1.10 52.00 29.91 68.60 2.05 54.05 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 N -0.64 -27.44 5.02 -477.15 -2.40 -29.84 16 14 C 0.15 6.01 1.82 44.17 0.08 6.09 16 15 H 0.04 1.94 4.55 -2.39 -0.01 1.93 16 16 C 0.18 5.82 3.24 42.54 0.14 5.96 16 17 N -0.48 -13.26 8.46 -183.88 -1.56 -14.82 16 18 C 0.13 2.26 11.18 84.69 0.95 3.21 16 19 C -0.16 -2.26 10.11 22.36 0.23 -2.03 16 20 C -0.03 -0.59 9.54 22.47 0.21 -0.38 16 21 C -0.25 -7.31 5.16 -19.78 -0.10 -7.41 16 22 C 0.51 16.55 2.79 71.23 0.20 16.75 16 23 F -0.17 -4.79 16.06 44.97 0.72 -4.07 16 24 F -0.18 -7.62 15.16 44.97 0.68 -6.94 16 25 F -0.18 -5.94 16.42 44.97 0.74 -5.20 16 26 C -0.15 -5.30 5.83 -10.79 -0.06 -5.37 16 27 C -0.17 -4.66 9.70 30.62 0.30 -4.36 16 28 C -0.14 -4.11 9.80 30.62 0.30 -3.81 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 2.68 7.51 -2.39 -0.02 2.66 16 32 H 0.03 1.75 6.08 -2.39 -0.01 1.73 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.26 16.28 5.73 -92.71 -0.53 15.74 16 35 H 0.33 14.61 7.63 -89.70 -0.68 13.93 16 36 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.17 2.41 7.27 -2.91 -0.02 2.39 16 39 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.08 2.29 6.27 -2.39 -0.01 2.28 16 41 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.10 3.22 7.10 -2.38 -0.02 3.20 16 Total: -1.00 -68.57 356.90 4.96 -63.62 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.61 Total: 25.52 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.83 Total: -25.30 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.67 Total: -101.68 kcal Atomic # 9 Polarization: -18.35 SS G_CDS: 2.14 Total: -16.21 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 2.05 Total: 54.05 kcal Total: -68.57 4.96 -63.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.952 kcal (2) G-P(sol) polarization free energy of solvation -68.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds