Wall clock time and date at job start Tue Mar 31 2020 15:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47007 * 2 1 4 4 H 1.09003 * 109.47078 * 306.19560 * 3 2 1 5 5 C 1.50700 * 109.46725 * 186.20174 * 3 2 1 6 6 H 1.08008 * 119.99639 * 239.99828 * 5 3 2 7 7 C 1.37877 * 120.00422 * 59.99649 * 5 3 2 8 8 N 1.31516 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46876 * 90.00175 * 9 7 5 11 11 H 1.48499 * 109.47363 * 210.00057 * 9 7 5 12 12 H 1.48500 * 109.46972 * 330.00319 * 9 7 5 13 13 N 1.46899 * 109.47254 * 66.20267 * 3 2 1 14 14 C 1.46899 * 110.99901 * 200.11172 * 13 3 2 15 15 H 1.09008 * 109.47045 * 327.79049 * 14 13 3 16 16 C 1.50698 * 109.47581 * 87.78854 * 14 13 3 17 17 C 1.38674 * 120.78544 * 30.93966 * 16 14 13 18 18 C 1.38178 * 119.16088 * 180.02562 * 17 16 14 19 19 N 1.31888 * 120.76698 * 359.97438 * 18 17 16 20 20 C 1.31857 * 121.72698 * 359.97438 * 19 18 17 21 21 C 1.38224 * 120.75765 * 0.02562 * 20 19 18 22 22 C 1.50707 * 120.41574 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47102 * 359.97438 * 22 21 20 24 24 F 1.39897 * 109.47169 * 119.99555 * 22 21 20 25 25 F 1.39901 * 109.47254 * 239.99806 * 22 21 20 26 26 C 1.52999 * 109.47080 * 207.79529 * 14 13 3 27 27 C 1.53008 * 117.50038 * 122.95542 * 26 14 13 28 28 C 1.52999 * 117.50193 * 54.29360 * 26 14 13 29 29 H 1.09001 * 109.47276 * 304.28042 * 1 2 3 30 30 H 1.08995 * 109.47002 * 64.27681 * 1 2 3 31 31 H 1.08991 * 109.47349 * 184.28410 * 1 2 3 32 32 H 1.09000 * 109.46973 * 240.00033 * 2 1 3 33 33 H 1.09005 * 109.47011 * 119.99835 * 2 1 3 34 34 H 0.96996 * 119.99794 * 179.97438 * 8 7 5 35 35 H 1.00900 * 110.99867 * 324.05671 * 13 3 2 36 36 H 1.08001 * 120.42020 * 359.97438 * 17 16 14 37 37 H 1.08002 * 119.61672 * 180.27109 * 18 17 16 38 38 H 1.07994 * 119.61709 * 180.02562 * 20 19 18 39 39 H 1.09000 * 115.54616 * 268.61813 * 26 14 13 40 40 H 1.09004 * 117.49451 * 359.97438 * 27 26 14 41 41 H 1.08996 * 117.49562 * 145.01770 * 27 26 14 42 42 H 1.09000 * 117.49674 * 214.98206 * 28 26 14 43 43 H 1.09002 * 117.49818 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5889 1.9874 -0.8294 5 6 3.5392 1.4452 -0.1535 6 1 4.1597 1.8845 0.6137 7 6 4.1186 0.8870 -1.2732 8 7 3.3629 0.3526 -2.2075 9 14 5.9769 0.8910 -1.4637 10 1 6.5388 -0.3447 -0.8616 11 1 6.3265 0.9421 -2.9060 12 1 6.5425 2.0788 -0.7748 13 7 1.6763 2.0905 1.2672 14 6 1.7072 3.5535 1.1382 15 1 2.4793 3.8390 0.4237 16 6 0.3674 4.0435 0.6526 17 6 -0.7976 3.3674 0.9823 18 6 -2.0080 3.8460 0.5183 19 7 -2.0627 4.9317 -0.2286 20 6 -0.9758 5.6002 -0.5607 21 6 0.2701 5.1812 -0.1334 22 6 1.5073 5.9515 -0.5171 23 9 1.1471 7.0491 -1.3064 24 9 2.1545 6.4004 0.6390 25 9 2.3687 5.1200 -1.2408 26 6 2.0162 4.1791 2.4999 27 6 3.2366 5.0971 2.5951 28 6 3.2757 3.7032 3.2266 29 1 -0.3634 0.5788 0.8492 30 1 -0.3633 0.4460 -0.9258 31 1 -0.3633 -1.0247 0.0768 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7705 -0.0397 -2.9954 35 1 0.7735 1.7749 1.5886 36 1 -0.7594 2.4776 1.5932 37 1 -2.9204 3.3278 0.7743 38 1 -1.0601 6.4854 -1.1737 39 1 1.1482 4.4309 3.1093 40 1 3.8195 5.2550 1.6877 41 1 3.1716 5.9525 3.2674 42 1 3.2364 3.6422 4.3142 43 1 3.8840 2.9441 2.7348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:08 Heat of formation + Delta-G solvation = -84.004021 kcal Electronic energy + Delta-G solvation = -30468.833526 eV Core-core repulsion = 26100.073805 eV Total energy + Delta-G solvation = -4368.759721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.98477 -47.53594 -47.33964 -40.53682 -37.83001 -35.67188 -33.64886 -32.34832 -31.61033 -30.50700 -27.22627 -26.08328 -25.59928 -23.25847 -22.38556 -22.29137 -21.84986 -19.94629 -19.51657 -18.39564 -18.23024 -18.20050 -16.88435 -16.24406 -16.05576 -15.30238 -15.01743 -14.66444 -14.57700 -14.27734 -14.08995 -13.93387 -13.87156 -13.78713 -13.54350 -13.51080 -13.37389 -12.88453 -12.71004 -12.42154 -12.28884 -11.90057 -11.52237 -11.33797 -11.12003 -10.95134 -10.83223 -10.64447 -10.12013 -10.01451 -9.93102 -9.78268 -9.68136 -9.54487 -9.46981 -9.31910 -9.11508 -8.39335 -7.47754 -6.00946 -4.05299 0.74108 1.12889 2.80347 3.30652 3.37570 3.40929 3.54044 3.81665 4.13640 4.19139 4.34090 4.42417 4.53107 4.60825 4.71689 4.99600 5.10014 5.21502 5.27676 5.32623 5.47103 5.51986 5.62734 5.69843 5.91445 5.97737 6.05222 6.06576 6.09267 6.20372 6.33456 6.39118 6.45469 6.57785 6.75313 6.78367 7.00293 7.07454 7.39236 7.69569 7.73968 7.85083 8.12176 8.30128 8.61770 9.01264 9.59901 11.04648 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.005977 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.157522 B = 4683.158472 C = 5275.608872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.140 3.860 15 H 0.110 0.890 16 C 0.007 3.993 17 C -0.176 4.176 18 C 0.128 3.872 19 N -0.490 5.490 20 C 0.148 3.852 21 C -0.235 4.235 22 C 0.510 3.490 23 F -0.182 7.182 24 F -0.167 7.167 25 F -0.161 7.161 26 C -0.139 4.139 27 C -0.176 4.176 28 C -0.151 4.151 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.318 0.682 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.735 8.882 6.652 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.297 5.297 14 C 0.028 3.972 15 H 0.128 0.872 16 C -0.003 4.003 17 C -0.196 4.196 18 C -0.027 4.027 19 N -0.199 5.199 20 C -0.010 4.010 21 C -0.239 4.239 22 C 0.455 3.545 23 F -0.164 7.164 24 F -0.148 7.148 25 F -0.142 7.142 26 C -0.158 4.158 27 C -0.214 4.214 28 C -0.188 4.188 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.859 9.010 6.426 13.573 hybrid contribution 1.064 -0.133 -0.572 1.216 sum -6.795 8.877 5.853 12.618 Atomic orbital electron populations 1.21912 0.99715 0.99537 0.99550 1.21748 0.91142 1.00164 1.03236 1.19198 0.95761 0.90119 0.83691 0.98230 1.21124 0.90974 1.37109 1.04147 0.92009 1.24923 0.97981 0.95524 0.95811 1.69860 1.34633 1.39353 1.09400 0.86592 0.85872 0.78443 0.77098 1.20728 1.21400 1.19892 1.60906 1.33179 1.01306 1.34280 1.20534 0.90772 0.90431 0.95435 0.87238 1.21339 0.98980 0.90422 0.89551 1.22060 0.92424 1.02080 1.02992 1.22950 0.97747 0.91277 0.90751 1.67851 1.30908 1.07940 1.13196 1.22643 0.86326 0.97763 0.94279 1.20959 0.94613 1.00697 1.07634 1.18108 0.83940 0.77356 0.75074 1.93135 1.91757 1.56125 1.75371 1.93264 1.82893 1.89801 1.48824 1.93309 1.71799 1.71032 1.78028 1.22030 0.92585 1.03897 0.97251 1.23037 1.01398 0.93810 1.03151 1.22838 1.00253 0.97277 0.98430 0.94841 0.93928 0.94286 0.88097 0.93898 0.93034 0.86087 0.83624 0.81976 0.81713 0.89018 0.88742 0.89551 0.89794 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.81 37.16 0.36 -2.35 16 2 C -0.12 -2.78 5.39 -26.73 -0.14 -2.92 16 3 C 0.22 5.11 1.87 -68.86 -0.13 4.98 16 4 H 0.00 0.00 7.79 -51.93 -0.40 -0.40 16 5 C -0.49 -12.99 8.24 -34.44 -0.28 -13.27 16 6 H 0.06 1.64 7.77 -52.48 -0.41 1.23 16 7 C 0.06 1.58 5.29 -17.82 -0.09 1.48 16 8 N -0.89 -24.84 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.67 -12.80 5.77 -102.17 -0.59 -13.38 16 14 C 0.14 2.47 1.58 -68.87 -0.11 2.36 16 15 H 0.11 2.28 4.68 -51.92 -0.24 2.04 16 16 C 0.01 0.11 4.75 -104.32 -0.50 -0.38 16 17 C -0.18 -2.43 9.22 -39.44 -0.36 -2.79 16 18 C 0.13 1.61 11.18 -17.55 -0.20 1.42 16 19 N -0.49 -6.86 10.36 -13.25 -0.14 -7.00 16 20 C 0.15 2.07 10.60 -17.55 -0.19 1.88 16 21 C -0.23 -3.64 5.38 -104.48 -0.56 -4.21 16 22 C 0.51 8.07 2.82 36.01 0.10 8.18 16 23 F -0.18 -2.60 16.00 2.25 0.04 -2.56 16 24 F -0.17 -2.54 12.99 2.25 0.03 -2.51 16 25 F -0.16 -3.05 15.45 2.25 0.03 -3.01 16 26 C -0.14 -2.13 4.95 -90.62 -0.45 -2.58 16 27 C -0.18 -2.59 8.07 -26.69 -0.22 -2.81 16 28 C -0.15 -2.30 10.01 -26.69 -0.27 -2.57 16 29 H 0.03 0.52 5.41 -51.93 -0.28 0.24 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.10 2.58 5.93 -51.93 -0.31 2.27 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.32 5.48 4.04 -39.29 -0.16 5.32 16 36 H 0.15 1.82 5.27 -52.49 -0.28 1.54 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.17 1.92 7.17 -52.49 -0.38 1.54 16 39 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 40 H 0.09 1.51 7.27 -51.93 -0.38 1.14 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.11 1.95 8.09 -51.93 -0.42 1.53 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -27.96 350.45 -8.11 -36.07 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.34 Total: 8.74 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.03 Total: -13.58 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.10 Total: -44.61 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.10 Total: -8.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.96 -8.11 -36.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.936 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds