Wall clock time and date at job start Tue Mar 31 2020 15:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47007 * 2 1 4 4 H 1.09003 * 109.47078 * 306.19560 * 3 2 1 5 5 C 1.50700 * 109.46725 * 186.20174 * 3 2 1 6 6 H 1.08008 * 119.99639 * 239.99828 * 5 3 2 7 7 C 1.37877 * 120.00422 * 59.99649 * 5 3 2 8 8 N 1.31516 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46876 * 90.00175 * 9 7 5 11 11 H 1.48499 * 109.47363 * 210.00057 * 9 7 5 12 12 H 1.48500 * 109.46972 * 330.00319 * 9 7 5 13 13 N 1.46899 * 109.47254 * 66.20267 * 3 2 1 14 14 C 1.46899 * 110.99901 * 200.11172 * 13 3 2 15 15 H 1.09008 * 109.47045 * 327.79049 * 14 13 3 16 16 C 1.50698 * 109.47581 * 87.78854 * 14 13 3 17 17 C 1.38674 * 120.78544 * 30.93966 * 16 14 13 18 18 C 1.38178 * 119.16088 * 180.02562 * 17 16 14 19 19 N 1.31888 * 120.76698 * 359.97438 * 18 17 16 20 20 C 1.31857 * 121.72698 * 359.97438 * 19 18 17 21 21 C 1.38224 * 120.75765 * 0.02562 * 20 19 18 22 22 C 1.50707 * 120.41574 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47102 * 359.97438 * 22 21 20 24 24 F 1.39897 * 109.47169 * 119.99555 * 22 21 20 25 25 F 1.39901 * 109.47254 * 239.99806 * 22 21 20 26 26 C 1.52999 * 109.47080 * 207.79529 * 14 13 3 27 27 C 1.53008 * 117.50038 * 122.95542 * 26 14 13 28 28 C 1.52999 * 117.50193 * 54.29360 * 26 14 13 29 29 H 1.09001 * 109.47276 * 304.28042 * 1 2 3 30 30 H 1.08995 * 109.47002 * 64.27681 * 1 2 3 31 31 H 1.08991 * 109.47349 * 184.28410 * 1 2 3 32 32 H 1.09000 * 109.46973 * 240.00033 * 2 1 3 33 33 H 1.09005 * 109.47011 * 119.99835 * 2 1 3 34 34 H 0.96996 * 119.99794 * 179.97438 * 8 7 5 35 35 H 1.00900 * 110.99867 * 324.05671 * 13 3 2 36 36 H 1.08001 * 120.42020 * 359.97438 * 17 16 14 37 37 H 1.08002 * 119.61672 * 180.27109 * 18 17 16 38 38 H 1.07994 * 119.61709 * 180.02562 * 20 19 18 39 39 H 1.09000 * 115.54616 * 268.61813 * 26 14 13 40 40 H 1.09004 * 117.49451 * 359.97438 * 27 26 14 41 41 H 1.08996 * 117.49562 * 145.01770 * 27 26 14 42 42 H 1.09000 * 117.49674 * 214.98206 * 28 26 14 43 43 H 1.09002 * 117.49818 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5889 1.9874 -0.8294 5 6 3.5392 1.4452 -0.1535 6 1 4.1597 1.8845 0.6137 7 6 4.1186 0.8870 -1.2732 8 7 3.3629 0.3526 -2.2075 9 14 5.9769 0.8910 -1.4637 10 1 6.5388 -0.3447 -0.8616 11 1 6.3265 0.9421 -2.9060 12 1 6.5425 2.0788 -0.7748 13 7 1.6763 2.0905 1.2672 14 6 1.7072 3.5535 1.1382 15 1 2.4793 3.8390 0.4237 16 6 0.3674 4.0435 0.6526 17 6 -0.7976 3.3674 0.9823 18 6 -2.0080 3.8460 0.5183 19 7 -2.0627 4.9317 -0.2286 20 6 -0.9758 5.6002 -0.5607 21 6 0.2701 5.1812 -0.1334 22 6 1.5073 5.9515 -0.5171 23 9 1.1471 7.0491 -1.3064 24 9 2.1545 6.4004 0.6390 25 9 2.3687 5.1200 -1.2408 26 6 2.0162 4.1791 2.4999 27 6 3.2366 5.0971 2.5951 28 6 3.2757 3.7032 3.2266 29 1 -0.3634 0.5788 0.8492 30 1 -0.3633 0.4460 -0.9258 31 1 -0.3633 -1.0247 0.0768 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7705 -0.0397 -2.9954 35 1 0.7735 1.7749 1.5886 36 1 -0.7594 2.4776 1.5932 37 1 -2.9204 3.3278 0.7743 38 1 -1.0601 6.4854 -1.1737 39 1 1.1482 4.4309 3.1093 40 1 3.8195 5.2550 1.6877 41 1 3.1716 5.9525 3.2674 42 1 3.2364 3.6422 4.3142 43 1 3.8840 2.9441 2.7348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:07 Heat of formation + Delta-G solvation = -99.099313 kcal Electronic energy + Delta-G solvation = -30469.488107 eV Core-core repulsion = 26100.073805 eV Total energy + Delta-G solvation = -4369.414302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.25980 -48.78469 -48.66130 -41.67741 -39.18375 -37.22127 -35.04576 -33.91864 -33.06785 -31.91904 -28.87930 -27.44172 -27.02840 -24.86243 -23.73745 -23.46912 -23.06421 -21.51237 -21.05011 -19.63877 -19.49966 -19.47055 -18.40072 -17.79483 -17.33053 -16.73885 -16.61752 -16.02463 -15.80006 -15.61393 -15.47127 -15.36406 -15.19307 -15.05495 -14.85691 -14.82262 -14.75447 -14.42025 -14.02494 -13.83900 -13.76633 -13.37504 -13.14904 -12.87748 -12.72650 -12.54503 -12.40295 -12.19482 -11.98785 -11.59439 -11.52853 -11.19322 -11.11306 -10.90601 -10.74626 -10.64403 -10.43355 -10.40955 -9.13946 -8.07555 -6.17459 -0.34823 -0.00358 1.37840 1.39566 1.48302 1.57576 2.41857 2.45976 2.60280 2.90180 2.94905 3.18806 3.30556 3.33674 3.35871 3.59651 3.76790 3.92127 4.04424 4.10876 4.30309 4.33239 4.45317 4.46165 4.56249 4.59430 4.68240 4.73058 4.77425 4.88617 4.97475 5.10156 5.15543 5.23664 5.32264 5.38453 5.41775 5.49243 5.61524 5.76008 5.90385 6.33732 6.42983 6.68040 6.93508 6.97152 7.50845 8.95878 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010947 B = 0.005977 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.157522 B = 4683.158472 C = 5275.608872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.234 3.766 4 H -0.038 1.038 5 C -0.504 4.504 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.661 5.661 14 C 0.143 3.857 15 H 0.072 0.928 16 C -0.012 4.012 17 C -0.178 4.178 18 C 0.139 3.861 19 N -0.498 5.498 20 C 0.150 3.850 21 C -0.249 4.249 22 C 0.510 3.490 23 F -0.173 7.173 24 F -0.165 7.165 25 F -0.186 7.186 26 C -0.138 4.138 27 C -0.169 4.169 28 C -0.151 4.151 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.258 0.742 35 H 0.332 0.668 36 H 0.161 0.839 37 H 0.203 0.797 38 H 0.185 0.815 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 9.317 8.319 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.126 3.874 4 H -0.021 1.021 5 C -0.543 4.543 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.294 5.294 14 C 0.032 3.968 15 H 0.090 0.910 16 C -0.022 4.022 17 C -0.198 4.198 18 C -0.017 4.017 19 N -0.206 5.206 20 C -0.008 4.008 21 C -0.253 4.253 22 C 0.455 3.545 23 F -0.155 7.155 24 F -0.146 7.146 25 F -0.167 7.167 26 C -0.157 4.157 27 C -0.207 4.207 28 C -0.188 4.188 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.154 0.846 36 H 0.178 0.822 37 H 0.220 0.780 38 H 0.202 0.798 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.676 9.458 8.107 15.773 hybrid contribution 1.604 -0.218 -1.085 1.949 sum -8.071 9.241 7.022 14.137 Atomic orbital electron populations 1.21774 0.96167 1.01386 1.00214 1.21577 0.94371 0.98771 1.01308 1.18837 0.93836 0.90628 0.84143 1.02093 1.21410 0.92828 1.36331 1.03729 0.93149 1.25570 1.01499 0.95619 0.95825 1.69988 1.35834 1.40190 1.09698 0.85779 0.81839 0.78494 0.76895 1.19964 1.21315 1.19880 1.60767 1.34200 1.02501 1.31908 1.20328 0.91083 0.89355 0.96027 0.90969 1.21235 0.98778 0.91402 0.90749 1.22250 0.92061 1.02281 1.03165 1.23582 0.98683 0.90428 0.88968 1.67961 1.30597 1.08528 1.13564 1.22952 0.85692 0.98243 0.93892 1.20981 0.94814 1.01072 1.08472 1.18212 0.83886 0.77427 0.74955 1.93144 1.91589 1.55559 1.75177 1.93255 1.82979 1.89735 1.48607 1.93259 1.72777 1.71980 1.78706 1.22041 0.93404 1.04003 0.96223 1.23033 1.00514 0.94459 1.02684 1.22783 0.99719 0.96682 0.99647 0.92003 0.95005 0.92191 0.91617 0.94134 0.93267 0.84596 0.82166 0.77993 0.79832 0.86866 0.90861 0.86946 0.87115 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.81 71.98 0.71 -4.07 16 2 C -0.12 -5.47 5.39 30.60 0.16 -5.31 16 3 C 0.23 11.16 1.87 44.17 0.08 11.25 16 4 H -0.04 -2.12 7.79 -2.39 -0.02 -2.14 16 5 C -0.50 -27.42 8.24 25.60 0.21 -27.21 16 6 H 0.05 2.79 7.77 -2.91 -0.02 2.77 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -52.70 11.29 21.45 0.24 -52.46 16 9 Si 0.94 44.62 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.66 -25.39 5.77 -477.15 -2.75 -28.14 16 14 C 0.14 5.08 1.58 44.17 0.07 5.15 16 15 H 0.07 3.14 4.68 -2.38 -0.01 3.13 16 16 C -0.01 -0.37 4.75 -19.67 -0.09 -0.46 16 17 C -0.18 -4.46 9.22 22.36 0.21 -4.25 16 18 C 0.14 3.01 11.18 84.67 0.95 3.96 16 19 N -0.50 -12.57 10.36 -195.85 -2.03 -14.60 16 20 C 0.15 3.93 10.60 84.69 0.90 4.83 16 21 C -0.25 -7.58 5.38 -19.77 -0.11 -7.69 16 22 C 0.51 16.35 2.82 71.24 0.20 16.55 16 23 F -0.17 -4.89 16.00 44.97 0.72 -4.17 16 24 F -0.16 -5.05 12.99 44.97 0.58 -4.46 16 25 F -0.19 -7.43 15.45 44.97 0.69 -6.73 16 26 C -0.14 -4.09 4.95 -10.79 -0.05 -4.14 16 27 C -0.17 -4.85 8.07 30.62 0.25 -4.60 16 28 C -0.15 -4.49 10.01 30.62 0.31 -4.18 16 29 H 0.06 1.76 5.41 -2.39 -0.01 1.74 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 3.45 5.93 -2.39 -0.01 3.44 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.52 16 35 H 0.33 10.89 4.04 -89.69 -0.36 10.53 16 36 H 0.16 3.45 5.27 -2.91 -0.02 3.43 16 37 H 0.20 2.68 8.06 -2.91 -0.02 2.65 16 38 H 0.18 3.94 7.17 -2.91 -0.02 3.92 16 39 H 0.11 2.90 8.06 -2.39 -0.02 2.88 16 40 H 0.07 2.41 7.27 -2.39 -0.02 2.40 16 41 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.08 2.80 8.09 -2.39 -0.02 2.78 16 Total: -1.00 -63.06 350.45 4.41 -58.64 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.70 Total: 24.30 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.23 Total: -19.01 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -4.54 Total: -95.20 kcal Atomic # 9 Polarization: -17.37 SS G_CDS: 2.00 Total: -15.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.06 4.41 -58.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.456 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds