Wall clock time and date at job start Tue Mar 31 2020 15:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47277 * 2 1 4 4 H 1.08999 * 109.47311 * 54.68167 * 3 2 1 5 5 C 1.50699 * 109.47353 * 174.67998 * 3 2 1 6 6 H 1.08003 * 120.00238 * 119.72257 * 5 3 2 7 7 C 1.37881 * 120.00144 * 300.00098 * 5 3 2 8 8 N 1.31523 * 119.99718 * 359.72572 * 7 5 3 9 9 Si 1.86793 * 120.00472 * 179.72428 * 7 5 3 10 10 H 1.48503 * 109.46928 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47225 * 119.99833 * 9 7 5 12 12 H 1.48503 * 109.47063 * 240.00130 * 9 7 5 13 13 N 1.46898 * 109.46982 * 294.67903 * 3 2 1 14 14 C 1.46901 * 110.99841 * 157.90278 * 13 3 2 15 15 H 1.08993 * 109.47633 * 37.67710 * 14 13 3 16 16 C 1.50699 * 109.46887 * 277.67264 * 14 13 3 17 17 C 1.38675 * 120.79279 * 332.17527 * 16 14 13 18 18 C 1.38186 * 119.16615 * 179.75119 * 17 16 14 19 19 N 1.31890 * 120.76185 * 0.53513 * 18 17 16 20 20 C 1.31855 * 121.72509 * 359.74282 * 19 18 17 21 21 C 1.38233 * 120.76356 * 359.97004 * 20 19 18 22 22 C 1.50707 * 120.41713 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.46979 * 0.03002 * 22 21 20 24 24 F 1.39899 * 109.46471 * 120.02405 * 22 21 20 25 25 F 1.39898 * 109.47139 * 240.02566 * 22 21 20 26 26 C 1.53003 * 109.46928 * 157.67780 * 14 13 3 27 27 C 1.52996 * 117.50034 * 7.93972 * 26 14 13 28 28 C 1.52998 * 117.49951 * 299.27881 * 26 14 13 29 29 H 1.09001 * 109.47409 * 186.12682 * 1 2 3 30 30 H 1.08994 * 109.47419 * 306.13378 * 1 2 3 31 31 H 1.09006 * 109.47290 * 66.13045 * 1 2 3 32 32 H 1.09000 * 109.47297 * 239.99775 * 2 1 3 33 33 H 1.09004 * 109.47179 * 120.00260 * 2 1 3 34 34 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00386 * 33.94652 * 13 3 2 36 36 H 1.08003 * 120.41897 * 0.02562 * 17 16 14 37 37 H 1.07993 * 119.61971 * 180.29278 * 18 17 16 38 38 H 1.08003 * 119.61925 * 180.02562 * 20 19 18 39 39 H 1.09000 * 115.54808 * 153.61294 * 26 14 13 40 40 H 1.08994 * 117.50144 * 0.02562 * 27 26 14 41 41 H 1.09004 * 117.50055 * 145.02151 * 27 26 14 42 42 H 1.08994 * 117.50002 * 214.98152 * 28 26 14 43 43 H 1.09006 * 117.49610 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 3.5412 1.4445 0.1317 6 1 4.1508 1.8837 -0.6442 7 6 4.1368 0.8807 1.2401 8 7 3.3944 0.3458 2.1849 9 14 5.9979 0.8763 1.3998 10 1 6.5982 1.5339 0.2113 11 1 6.3912 1.6152 2.6264 12 1 6.4838 -0.5242 1.4883 13 7 1.6580 2.0969 -1.2585 14 6 1.6452 3.5582 -1.1092 15 1 2.4697 3.8650 -0.4656 16 6 0.3394 3.9887 -0.4923 17 6 -0.8118 3.2362 -0.6698 18 6 -1.9899 3.6595 -0.0847 19 7 -2.0292 4.7697 0.6261 20 6 -0.9559 5.5129 0.8111 21 6 0.2591 5.1495 0.2612 22 6 1.4811 6.0045 0.4781 23 9 1.1428 7.1101 1.2656 24 9 2.4664 5.2532 1.1277 25 9 1.9683 6.4436 -0.7576 26 6 1.8003 4.2126 -2.4835 27 6 1.7461 3.3003 -3.7105 28 6 3.0782 3.9117 -3.2691 29 1 -0.3634 -1.0218 0.1097 30 1 -0.3634 0.6059 0.8299 31 1 -0.3634 0.4159 -0.9398 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8133 -0.0505 2.9648 35 1 0.7652 1.7590 -1.5853 36 1 -0.7869 2.3283 -1.2542 37 1 -2.8897 3.0765 -0.2142 38 1 -1.0267 6.4156 1.3998 39 1 1.3739 5.2111 -2.5795 40 1 1.5996 2.2340 -3.5388 41 1 1.2844 3.6988 -4.6140 42 1 3.4923 4.7120 -3.8822 43 1 3.8083 3.2471 -2.8070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:13 Heat of formation + Delta-G solvation = -83.554544 kcal Electronic energy + Delta-G solvation = -30408.525996 eV Core-core repulsion = 26039.785766 eV Total energy + Delta-G solvation = -4368.740230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.01084 -47.56177 -47.37464 -40.54811 -37.96804 -35.55582 -33.59833 -32.33391 -31.56985 -30.50196 -27.22748 -26.08400 -25.79739 -23.21186 -22.45818 -22.30786 -21.87259 -19.67733 -19.55712 -18.43878 -18.29942 -18.21351 -16.84366 -16.23556 -16.08010 -15.42166 -14.92346 -14.73766 -14.61188 -14.32862 -14.10840 -13.92112 -13.88245 -13.80937 -13.55990 -13.54413 -13.23380 -12.91232 -12.75459 -12.40521 -12.26417 -11.98141 -11.47997 -11.41203 -11.11864 -10.98993 -10.86097 -10.63655 -10.16841 -9.99635 -9.86266 -9.82229 -9.67478 -9.49400 -9.44737 -9.31114 -9.13001 -8.40673 -7.52548 -6.01786 -4.05750 0.75484 1.15882 2.78216 3.29549 3.37989 3.42356 3.55877 3.80052 4.12952 4.19858 4.35997 4.41311 4.58158 4.61243 4.68560 4.97842 5.09112 5.26229 5.27834 5.32394 5.44974 5.50044 5.56018 5.81292 5.93386 5.96165 6.03023 6.06529 6.07755 6.23522 6.30655 6.41802 6.49135 6.65037 6.72924 6.74314 6.98162 7.05561 7.36671 7.66695 7.76030 7.84303 8.09914 8.28229 8.59077 9.01264 9.59541 11.03950 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.005843 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.110959 B = 4790.726301 C = 5169.362511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.666 5.666 14 C 0.140 3.860 15 H 0.113 0.887 16 C 0.008 3.992 17 C -0.173 4.173 18 C 0.128 3.872 19 N -0.491 5.491 20 C 0.148 3.852 21 C -0.239 4.239 22 C 0.513 3.487 23 F -0.181 7.181 24 F -0.160 7.160 25 F -0.172 7.172 26 C -0.149 4.149 27 C -0.169 4.169 28 C -0.161 4.161 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.259 0.741 35 H 0.319 0.681 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 8.238 -6.540 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.298 5.298 14 C 0.028 3.972 15 H 0.130 0.870 16 C -0.002 4.002 17 C -0.193 4.193 18 C -0.027 4.027 19 N -0.199 5.199 20 C -0.010 4.010 21 C -0.243 4.243 22 C 0.458 3.542 23 F -0.163 7.163 24 F -0.142 7.142 25 F -0.153 7.153 26 C -0.168 4.168 27 C -0.206 4.206 28 C -0.197 4.197 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.183 0.817 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.519 8.354 -6.250 13.469 hybrid contribution 1.129 -0.066 0.514 1.242 sum -7.390 8.288 -5.735 12.498 Atomic orbital electron populations 1.21948 0.99731 0.99952 0.99171 1.21758 0.91112 1.00212 1.03289 1.19209 0.95740 0.89961 0.83877 0.98031 1.21168 0.90888 1.36805 1.04405 0.91931 1.24930 0.98073 0.95515 0.95781 1.69872 1.34651 1.39338 1.09428 0.86527 0.85860 0.77582 0.77998 1.19699 1.21200 1.21149 1.60939 1.33562 1.00820 1.34464 1.20444 0.91566 0.90769 0.94382 0.86970 1.21340 0.98473 0.90367 0.90009 1.22090 0.92696 1.01830 1.02634 1.22949 0.97682 0.91779 0.90285 1.67849 1.29897 1.06190 1.15971 1.22633 0.86521 0.97988 0.93859 1.20951 0.95225 0.99843 1.08282 1.18078 0.83738 0.78101 0.74261 1.93137 1.92296 1.55652 1.75202 1.93302 1.63948 1.75527 1.81373 1.93213 1.89214 1.90176 1.42746 1.22234 1.04114 0.98880 0.91538 1.22895 1.00988 1.00529 0.96165 1.22828 0.91444 1.02852 1.02622 0.94190 0.93866 0.94814 0.93872 0.88115 0.93100 0.85996 0.83661 0.82014 0.81742 0.88391 0.87167 0.90350 0.89954 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.51 37.15 0.35 -2.30 16 2 C -0.13 -2.75 5.38 -26.74 -0.14 -2.89 16 3 C 0.22 5.03 1.87 -68.87 -0.13 4.90 16 4 H 0.00 0.05 7.56 -51.93 -0.39 -0.34 16 5 C -0.49 -12.93 8.33 -34.44 -0.29 -13.21 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.56 5.29 -17.81 -0.09 1.46 16 8 N -0.89 -24.77 11.31 55.43 0.63 -24.14 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.67 -12.51 4.32 -102.17 -0.44 -12.95 16 14 C 0.14 2.46 1.76 -68.86 -0.12 2.34 16 15 H 0.11 2.33 5.23 -51.93 -0.27 2.06 16 16 C 0.01 0.13 4.51 -104.32 -0.47 -0.34 16 17 C -0.17 -2.43 9.32 -39.44 -0.37 -2.80 16 18 C 0.13 1.66 11.18 -17.55 -0.20 1.46 16 19 N -0.49 -6.96 10.36 -13.25 -0.14 -7.09 16 20 C 0.15 2.08 10.60 -17.54 -0.19 1.89 16 21 C -0.24 -3.71 5.38 -104.48 -0.56 -4.27 16 22 C 0.51 8.07 2.83 36.01 0.10 8.17 16 23 F -0.18 -2.57 16.00 2.25 0.04 -2.53 16 24 F -0.16 -3.00 15.44 2.25 0.03 -2.97 16 25 F -0.17 -2.63 14.62 2.25 0.03 -2.60 16 26 C -0.15 -2.28 4.79 -90.62 -0.43 -2.71 16 27 C -0.17 -2.36 9.84 -26.70 -0.26 -2.62 16 28 C -0.16 -2.43 10.19 -26.69 -0.27 -2.70 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.50 5.49 -51.93 -0.28 0.22 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 2.55 5.96 -51.93 -0.31 2.24 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.32 5.35 4.00 -39.29 -0.16 5.19 16 36 H 0.15 1.88 4.76 -52.48 -0.25 1.63 16 37 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.17 1.92 7.17 -52.48 -0.38 1.54 16 39 H 0.10 1.44 6.91 -51.93 -0.36 1.08 16 40 H 0.11 1.65 6.75 -51.93 -0.35 1.30 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -27.73 350.51 -7.91 -35.64 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.25 Total: 8.79 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.07 Total: -13.62 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.05 Total: -44.19 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.10 Total: -8.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.73 -7.91 -35.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.916 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds