Wall clock time and date at job start Tue Mar 31 2020 15:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47277 * 2 1 4 4 H 1.08999 * 109.47311 * 54.68167 * 3 2 1 5 5 C 1.50699 * 109.47353 * 174.67998 * 3 2 1 6 6 H 1.08003 * 120.00238 * 119.72257 * 5 3 2 7 7 C 1.37881 * 120.00144 * 300.00098 * 5 3 2 8 8 N 1.31523 * 119.99718 * 359.72572 * 7 5 3 9 9 Si 1.86793 * 120.00472 * 179.72428 * 7 5 3 10 10 H 1.48503 * 109.46928 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47225 * 119.99833 * 9 7 5 12 12 H 1.48503 * 109.47063 * 240.00130 * 9 7 5 13 13 N 1.46898 * 109.46982 * 294.67903 * 3 2 1 14 14 C 1.46901 * 110.99841 * 157.90278 * 13 3 2 15 15 H 1.08993 * 109.47633 * 37.67710 * 14 13 3 16 16 C 1.50699 * 109.46887 * 277.67264 * 14 13 3 17 17 C 1.38675 * 120.79279 * 332.17527 * 16 14 13 18 18 C 1.38186 * 119.16615 * 179.75119 * 17 16 14 19 19 N 1.31890 * 120.76185 * 0.53513 * 18 17 16 20 20 C 1.31855 * 121.72509 * 359.74282 * 19 18 17 21 21 C 1.38233 * 120.76356 * 359.97004 * 20 19 18 22 22 C 1.50707 * 120.41713 * 180.02562 * 21 20 19 23 23 F 1.39896 * 109.46979 * 0.03002 * 22 21 20 24 24 F 1.39899 * 109.46471 * 120.02405 * 22 21 20 25 25 F 1.39898 * 109.47139 * 240.02566 * 22 21 20 26 26 C 1.53003 * 109.46928 * 157.67780 * 14 13 3 27 27 C 1.52996 * 117.50034 * 7.93972 * 26 14 13 28 28 C 1.52998 * 117.49951 * 299.27881 * 26 14 13 29 29 H 1.09001 * 109.47409 * 186.12682 * 1 2 3 30 30 H 1.08994 * 109.47419 * 306.13378 * 1 2 3 31 31 H 1.09006 * 109.47290 * 66.13045 * 1 2 3 32 32 H 1.09000 * 109.47297 * 239.99775 * 2 1 3 33 33 H 1.09004 * 109.47179 * 120.00260 * 2 1 3 34 34 H 0.96995 * 120.00293 * 180.02562 * 8 7 5 35 35 H 1.00900 * 111.00386 * 33.94652 * 13 3 2 36 36 H 1.08003 * 120.41897 * 0.02562 * 17 16 14 37 37 H 1.07993 * 119.61971 * 180.29278 * 18 17 16 38 38 H 1.08003 * 119.61925 * 180.02562 * 20 19 18 39 39 H 1.09000 * 115.54808 * 153.61294 * 26 14 13 40 40 H 1.08994 * 117.50144 * 0.02562 * 27 26 14 41 41 H 1.09004 * 117.50055 * 145.02151 * 27 26 14 42 42 H 1.08994 * 117.50002 * 214.98152 * 28 26 14 43 43 H 1.09006 * 117.49610 * 0.02562 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 3.5412 1.4445 0.1317 6 1 4.1508 1.8837 -0.6442 7 6 4.1368 0.8807 1.2401 8 7 3.3944 0.3458 2.1849 9 14 5.9979 0.8763 1.3998 10 1 6.5982 1.5339 0.2113 11 1 6.3912 1.6152 2.6264 12 1 6.4838 -0.5242 1.4883 13 7 1.6580 2.0969 -1.2585 14 6 1.6452 3.5582 -1.1092 15 1 2.4697 3.8650 -0.4656 16 6 0.3394 3.9887 -0.4923 17 6 -0.8118 3.2362 -0.6698 18 6 -1.9899 3.6595 -0.0847 19 7 -2.0292 4.7697 0.6261 20 6 -0.9559 5.5129 0.8111 21 6 0.2591 5.1495 0.2612 22 6 1.4811 6.0045 0.4781 23 9 1.1428 7.1101 1.2656 24 9 2.4664 5.2532 1.1277 25 9 1.9683 6.4436 -0.7576 26 6 1.8003 4.2126 -2.4835 27 6 1.7461 3.3003 -3.7105 28 6 3.0782 3.9117 -3.2691 29 1 -0.3634 -1.0218 0.1097 30 1 -0.3634 0.6059 0.8299 31 1 -0.3634 0.4159 -0.9398 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8133 -0.0505 2.9648 35 1 0.7652 1.7590 -1.5853 36 1 -0.7869 2.3283 -1.2542 37 1 -2.8897 3.0765 -0.2142 38 1 -1.0267 6.4156 1.3998 39 1 1.3739 5.2111 -2.5795 40 1 1.5996 2.2340 -3.5388 41 1 1.2844 3.6988 -4.6140 42 1 3.4923 4.7120 -3.8822 43 1 3.8083 3.2471 -2.8070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:12 Heat of formation + Delta-G solvation = -97.760248 kcal Electronic energy + Delta-G solvation = -30409.142002 eV Core-core repulsion = 26039.785766 eV Total energy + Delta-G solvation = -4369.356236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.28118 -48.79721 -48.70046 -41.70617 -39.30397 -37.10332 -34.95503 -33.94188 -33.00490 -31.90439 -28.84731 -27.53288 -27.14072 -24.85676 -23.65653 -23.57715 -23.07226 -21.43814 -20.85107 -19.68008 -19.56566 -19.48100 -18.42090 -17.70863 -17.40419 -16.87025 -16.46476 -16.07732 -15.84334 -15.74215 -15.43155 -15.38390 -15.15694 -15.03133 -14.88177 -14.84695 -14.72470 -14.34246 -14.03093 -13.79334 -13.70982 -13.55253 -13.13730 -12.86920 -12.72608 -12.52583 -12.45267 -12.13957 -11.99715 -11.55071 -11.49665 -11.26406 -11.07404 -10.85046 -10.69190 -10.64782 -10.44287 -10.39870 -9.16886 -8.07856 -6.17284 -0.35010 0.01394 1.36462 1.39862 1.49924 1.55326 2.42193 2.46097 2.58452 2.91489 2.98547 3.18958 3.32027 3.35312 3.37324 3.46273 3.75536 3.92022 4.08340 4.14833 4.25121 4.34799 4.42858 4.55011 4.57597 4.62891 4.68334 4.73824 4.78975 4.93982 5.00975 5.11319 5.14465 5.27339 5.36464 5.41005 5.43779 5.55175 5.61788 5.76166 5.89629 6.33287 6.43451 6.68370 6.92406 6.96554 7.51011 8.95693 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.005843 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.110959 B = 4790.726301 C = 5169.362511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.234 3.766 4 H -0.035 1.035 5 C -0.504 4.504 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.660 5.660 14 C 0.144 3.856 15 H 0.074 0.926 16 C -0.010 4.010 17 C -0.176 4.176 18 C 0.138 3.862 19 N -0.498 5.498 20 C 0.150 3.850 21 C -0.253 4.253 22 C 0.514 3.486 23 F -0.172 7.172 24 F -0.184 7.184 25 F -0.171 7.171 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.170 4.170 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.258 0.742 35 H 0.333 0.667 36 H 0.158 0.842 37 H 0.202 0.798 38 H 0.186 0.814 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 8.508 -7.998 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.126 3.874 4 H -0.017 1.017 5 C -0.543 4.543 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.293 5.293 14 C 0.033 3.967 15 H 0.092 0.908 16 C -0.020 4.020 17 C -0.196 4.196 18 C -0.018 4.018 19 N -0.207 5.207 20 C -0.008 4.008 21 C -0.257 4.257 22 C 0.459 3.541 23 F -0.153 7.153 24 F -0.166 7.166 25 F -0.152 7.152 26 C -0.171 4.171 27 C -0.185 4.185 28 C -0.207 4.207 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.218 0.782 38 H 0.202 0.798 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.431 8.636 -7.724 15.590 hybrid contribution 1.705 -0.102 0.959 1.959 sum -8.726 8.534 -6.764 13.955 Atomic orbital electron populations 1.21805 0.96051 1.01259 1.00479 1.21580 0.94448 0.98721 1.01315 1.18841 0.93705 0.90560 0.84332 1.01734 1.21450 0.92878 1.36037 1.03903 0.93286 1.25564 1.01522 0.95639 0.95807 1.69993 1.35801 1.40138 1.09739 0.85723 0.81916 0.77649 0.77680 1.19532 1.21329 1.20505 1.60785 1.34585 1.01763 1.32131 1.20209 0.91452 0.89796 0.95249 0.90848 1.21252 0.98389 0.91376 0.90988 1.22252 0.92432 1.01915 1.02964 1.23560 0.98482 0.91224 0.88484 1.67958 1.29674 1.06737 1.16307 1.22961 0.85888 0.98572 0.93338 1.20982 0.95491 1.00050 1.09172 1.18156 0.83471 0.78291 0.74186 1.93147 1.92118 1.55072 1.74968 1.93255 1.65098 1.76302 1.81909 1.93203 1.89272 1.90134 1.42597 1.22175 1.04557 0.99564 0.90819 1.22935 0.99492 0.99806 0.96283 1.22804 0.91336 1.03348 1.03209 0.92448 0.94681 0.91736 0.94149 0.91703 0.93289 0.84455 0.82467 0.78164 0.79754 0.87377 0.88039 0.87424 0.87876 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.51 71.98 0.68 -3.94 16 2 C -0.12 -5.38 5.38 30.59 0.16 -5.21 16 3 C 0.23 10.99 1.87 44.17 0.08 11.07 16 4 H -0.03 -1.89 7.56 -2.39 -0.02 -1.91 16 5 C -0.50 -27.31 8.33 25.60 0.21 -27.09 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.72 5.29 84.65 0.45 1.16 16 8 N -0.92 -52.37 11.31 21.45 0.24 -52.12 16 9 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.66 -24.78 4.32 -477.17 -2.06 -26.84 16 14 C 0.14 5.11 1.76 44.17 0.08 5.19 16 15 H 0.07 3.21 5.23 -2.39 -0.01 3.19 16 16 C -0.01 -0.32 4.51 -19.67 -0.09 -0.41 16 17 C -0.18 -4.57 9.32 22.36 0.21 -4.36 16 18 C 0.14 3.11 11.18 84.67 0.95 4.06 16 19 N -0.50 -12.85 10.36 -195.83 -2.03 -14.88 16 20 C 0.15 3.97 10.60 84.69 0.90 4.87 16 21 C -0.25 -7.72 5.38 -19.77 -0.11 -7.82 16 22 C 0.51 16.34 2.83 71.24 0.20 16.54 16 23 F -0.17 -4.79 16.00 44.97 0.72 -4.07 16 24 F -0.18 -7.24 15.44 44.97 0.69 -6.55 16 25 F -0.17 -5.24 14.62 44.97 0.66 -4.58 16 26 C -0.15 -4.53 4.79 -10.79 -0.05 -4.58 16 27 C -0.15 -3.83 9.84 30.62 0.30 -3.53 16 28 C -0.17 -5.05 10.19 30.62 0.31 -4.74 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.73 5.49 -2.38 -0.01 1.72 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 3.36 5.96 -2.38 -0.01 3.34 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.33 10.67 4.00 -89.69 -0.36 10.31 16 36 H 0.16 3.59 4.76 -2.91 -0.01 3.57 16 37 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.19 3.97 7.17 -2.91 -0.02 3.95 16 39 H 0.11 3.01 6.91 -2.39 -0.02 3.00 16 40 H 0.10 2.83 6.75 -2.39 -0.02 2.82 16 41 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -62.34 350.51 5.25 -57.09 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.70 Total: 24.11 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.29 Total: -18.80 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -3.85 Total: -93.85 kcal Atomic # 9 Polarization: -17.27 SS G_CDS: 2.07 Total: -15.20 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.34 5.25 -57.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.667 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds