Wall clock time and date at job start Tue Mar 31 2020 15:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46713 * 2 1 4 4 H 1.08996 * 109.47334 * 305.62646 * 3 2 1 5 5 C 1.50697 * 109.46670 * 185.62692 * 3 2 1 6 6 H 1.08004 * 120.00409 * 240.00084 * 5 3 2 7 7 C 1.37886 * 120.00116 * 60.00169 * 5 3 2 8 8 N 1.31515 * 119.99700 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 119.99831 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47251 * 269.99831 * 9 7 5 11 11 H 1.48501 * 109.47498 * 29.99586 * 9 7 5 12 12 H 1.48500 * 109.47066 * 149.99785 * 9 7 5 13 13 N 1.46893 * 109.47105 * 65.63333 * 3 2 1 14 14 C 1.46900 * 110.99747 * 208.24357 * 13 3 2 15 15 H 1.08999 * 109.47421 * 30.29388 * 14 13 3 16 16 C 1.50703 * 109.47005 * 270.28889 * 14 13 3 17 17 C 1.38672 * 120.78693 * 339.99913 * 16 14 13 18 18 C 1.38186 * 119.16011 * 179.97438 * 17 16 14 19 19 N 1.31895 * 120.76325 * 0.02562 * 18 17 16 20 20 C 1.31850 * 121.72750 * 359.97438 * 19 18 17 21 21 C 1.38233 * 120.76387 * 359.73951 * 20 19 18 22 22 C 1.50694 * 120.41704 * 180.26414 * 21 20 19 23 23 F 1.39903 * 109.47495 * 0.27194 * 22 21 20 24 24 F 1.39896 * 109.46910 * 120.27252 * 22 21 20 25 25 F 1.39903 * 109.47074 * 240.26855 * 22 21 20 26 26 C 1.53006 * 109.46999 * 150.29151 * 14 13 3 27 27 C 1.52992 * 117.50274 * 11.67613 * 26 14 13 28 28 C 1.53000 * 117.49987 * 303.01241 * 26 14 13 29 29 H 1.09004 * 109.47070 * 304.25943 * 1 2 3 30 30 H 1.08996 * 109.47539 * 64.25874 * 1 2 3 31 31 H 1.09001 * 109.46931 * 184.26157 * 1 2 3 32 32 H 1.09001 * 109.46888 * 240.00554 * 2 1 3 33 33 H 1.08993 * 109.47506 * 120.00123 * 2 1 3 34 34 H 0.97008 * 119.98992 * 180.02562 * 8 7 5 35 35 H 1.00904 * 111.00006 * 332.19147 * 13 3 2 36 36 H 1.07989 * 120.41752 * 359.95616 * 17 16 14 37 37 H 1.07995 * 119.61786 * 180.02562 * 18 17 16 38 38 H 1.07997 * 119.62050 * 179.97438 * 20 19 18 39 39 H 1.09008 * 115.54853 * 157.35188 * 26 14 13 40 40 H 1.09013 * 117.49871 * 0.02562 * 27 26 14 41 41 H 1.09000 * 117.50335 * 145.02111 * 27 26 14 42 42 H 1.08990 * 117.50156 * 214.98079 * 28 26 14 43 43 H 1.08997 * 117.49401 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 3.5405 1.4448 -0.1393 6 1 4.1538 1.8866 0.6321 7 6 4.1304 0.8830 -1.2517 8 7 5.4399 0.8854 -1.3735 9 14 3.0697 0.1196 -2.5864 10 1 2.8509 -1.3176 -2.2833 11 1 1.7608 0.8191 -2.6391 12 1 3.7540 0.2504 -3.8978 13 7 1.6644 2.0946 1.2616 14 6 1.5087 3.5439 1.0790 15 1 1.1760 3.7483 0.0614 16 6 2.8306 4.2257 1.3219 17 6 3.8331 3.5941 2.0424 18 6 5.0324 4.2502 2.2446 19 7 5.2282 5.4619 1.7620 20 6 4.2978 6.0925 1.0727 21 6 3.0752 5.4967 0.8254 22 6 2.0196 6.2221 0.0316 23 9 2.5054 7.4762 -0.3538 24 9 1.6982 5.4764 -1.1076 25 9 0.8751 6.3872 0.8191 26 6 0.4714 4.0743 2.0709 27 6 0.0222 3.1361 3.1927 28 6 -0.9256 3.4516 2.0328 29 1 -0.3633 0.5785 0.8494 30 1 -0.3634 0.4463 -0.9256 31 1 -0.3633 -1.0248 0.0764 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 5.8549 0.4904 -2.1563 35 1 0.8247 1.6861 1.6438 36 1 3.6784 2.6023 2.4406 37 1 5.8184 3.7651 2.8042 38 1 4.4945 7.0844 0.6936 39 1 0.5424 5.1373 2.3019 40 1 0.4660 2.1409 3.2245 41 1 -0.2027 3.5816 4.1618 42 1 -1.7735 4.1045 2.2393 43 1 -1.1057 2.6643 1.3009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:18 Heat of formation + Delta-G solvation = -85.530342 kcal Electronic energy + Delta-G solvation = -30523.710500 eV Core-core repulsion = 26154.884592 eV Total energy + Delta-G solvation = -4368.825907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.27319 -48.77104 -48.71181 -41.50368 -39.66163 -37.17624 -34.78822 -34.11747 -33.11545 -31.86474 -29.30553 -27.73670 -26.96937 -24.48393 -23.66465 -23.55648 -23.23336 -21.70838 -20.83732 -19.61758 -19.58272 -19.40992 -18.68868 -17.67978 -17.48432 -17.15396 -16.75235 -16.06750 -15.76891 -15.56259 -15.39990 -15.35018 -15.15482 -15.02792 -14.85508 -14.78025 -14.73671 -14.47105 -14.18223 -14.02523 -13.77027 -13.48027 -13.42419 -13.03531 -12.64949 -12.60989 -12.43018 -12.18394 -12.06096 -11.75159 -11.37423 -11.29169 -11.22256 -10.96937 -10.69690 -10.56073 -10.51131 -10.06045 -9.21950 -8.20475 -6.19477 -0.18374 0.29693 1.25086 1.32934 1.39031 1.58715 2.33190 2.60180 2.65929 2.83750 2.97356 3.11505 3.28582 3.36727 3.51195 3.53954 3.80852 3.98442 4.08012 4.13383 4.19364 4.24093 4.32543 4.36599 4.41673 4.53757 4.59268 4.77356 4.82863 4.85741 4.93017 5.00683 5.05708 5.08922 5.17185 5.24334 5.31997 5.33524 5.46940 5.65513 5.74035 6.06545 6.43203 6.83871 6.86582 6.92597 7.44077 8.93845 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.006529 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.396374 B = 4287.556328 C = 5180.430844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C 0.192 3.808 4 H -0.014 1.014 5 C -0.492 4.492 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.944 5.944 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.257 1.257 12 H -0.310 1.310 13 N -0.662 5.662 14 C 0.146 3.854 15 H 0.049 0.951 16 C 0.033 3.967 17 C -0.122 4.122 18 C 0.111 3.889 19 N -0.502 5.502 20 C 0.134 3.866 21 C -0.259 4.259 22 C 0.522 3.478 23 F -0.172 7.172 24 F -0.185 7.185 25 F -0.166 7.166 26 C -0.178 4.178 27 C -0.161 4.161 28 C -0.172 4.172 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.259 0.741 35 H 0.346 0.654 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 7.435 8.299 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.176 4.176 3 C 0.083 3.917 4 H 0.004 0.996 5 C -0.530 4.530 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.586 5.586 9 Si 0.756 3.244 10 H -0.194 1.194 11 H -0.182 1.182 12 H -0.238 1.238 13 N -0.297 5.297 14 C 0.036 3.964 15 H 0.067 0.933 16 C 0.024 3.976 17 C -0.142 4.142 18 C -0.044 4.044 19 N -0.211 5.211 20 C -0.025 4.025 21 C -0.263 4.263 22 C 0.467 3.533 23 F -0.153 7.153 24 F -0.166 7.166 25 F -0.147 7.147 26 C -0.197 4.197 27 C -0.199 4.199 28 C -0.209 4.209 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.196 0.804 38 H 0.200 0.800 39 H 0.137 0.863 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.783 7.818 8.564 15.834 hybrid contribution -1.412 -0.833 -2.119 2.679 sum -12.195 6.985 6.445 15.461 Atomic orbital electron populations 1.21887 0.94789 1.02688 1.01558 1.22044 0.96017 0.98290 1.01200 1.19561 0.94574 0.90934 0.86674 0.99648 1.21612 0.91224 1.35197 1.05013 0.90808 1.25610 0.95447 0.97199 0.99968 1.70012 1.10535 1.47971 1.30032 0.86206 0.79772 0.79763 0.78667 1.19356 1.18170 1.23846 1.60446 1.39882 1.00801 1.28605 1.19975 0.89752 0.89266 0.97436 0.93318 1.20100 0.96762 0.90449 0.90289 1.22111 0.92852 1.01144 0.98063 1.23341 0.96500 0.90009 0.94525 1.67814 1.31849 1.10590 1.10855 1.22829 0.86881 1.00131 0.92635 1.20942 0.98133 0.98730 1.08490 1.17994 0.81013 0.76762 0.77562 1.93150 1.87755 1.42735 1.91695 1.93196 1.93457 1.76707 1.53235 1.93151 1.52527 1.95439 1.73622 1.22657 0.95484 1.00040 1.01512 1.23114 1.01918 1.00874 0.93944 1.23108 0.92738 1.03400 1.01613 0.91224 0.93829 0.91042 0.94546 0.90972 0.93196 0.82938 0.82756 0.80450 0.80017 0.86254 0.87704 0.86986 0.86763 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 9.82 71.98 0.71 -3.62 16 2 C -0.14 -5.20 4.99 30.60 0.15 -5.05 16 3 C 0.19 8.13 1.62 44.17 0.07 8.20 16 4 H -0.01 -0.65 6.37 -2.39 -0.02 -0.66 16 5 C -0.49 -25.71 8.72 25.60 0.22 -25.49 16 6 H 0.07 4.09 4.96 -2.91 -0.01 4.07 16 7 C 0.01 0.82 5.45 84.66 0.46 1.28 16 8 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16 9 Si 0.93 44.63 24.41 68.60 1.67 46.30 16 10 H -0.27 -12.21 6.82 99.48 0.68 -11.53 16 11 H -0.26 -11.74 6.53 99.48 0.65 -11.09 16 12 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 13 N -0.66 -22.71 4.45 -477.16 -2.12 -24.83 16 14 C 0.15 4.84 2.06 44.17 0.09 4.93 16 15 H 0.05 1.84 5.27 -2.39 -0.01 1.83 16 16 C 0.03 1.16 4.61 -19.67 -0.09 1.07 16 17 C -0.12 -4.39 6.99 22.36 0.16 -4.23 16 18 C 0.11 3.79 11.18 84.67 0.95 4.73 16 19 N -0.50 -17.47 10.36 -195.84 -2.03 -19.50 16 20 C 0.13 4.32 10.60 84.69 0.90 5.22 16 21 C -0.26 -8.69 5.38 -19.77 -0.11 -8.79 16 22 C 0.52 16.03 2.88 71.23 0.21 16.24 16 23 F -0.17 -4.79 16.00 44.97 0.72 -4.07 16 24 F -0.18 -6.51 15.47 44.97 0.70 -5.81 16 25 F -0.17 -4.58 13.63 44.97 0.61 -3.96 16 26 C -0.18 -4.54 4.73 -10.79 -0.05 -4.60 16 27 C -0.16 -3.31 9.66 30.62 0.30 -3.02 16 28 C -0.17 -3.50 9.83 30.62 0.30 -3.20 16 29 H 0.07 1.67 5.84 -2.38 -0.01 1.65 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.53 3.22 -2.39 -0.01 1.52 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 35 H 0.35 9.97 3.05 -89.69 -0.27 9.69 16 36 H 0.15 5.68 6.74 -2.92 -0.02 5.66 16 37 H 0.18 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.18 4.80 7.17 -2.91 -0.02 4.78 16 39 H 0.12 3.03 5.83 -2.38 -0.01 3.01 16 40 H 0.10 2.27 6.19 -2.38 -0.01 2.25 16 41 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.09 1.90 7.26 -2.39 -0.02 1.88 16 Total: -1.00 -63.05 336.23 4.83 -58.22 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.72 Total: 27.25 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.26 Total: -16.33 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.85 Total: -101.60 kcal Atomic # 9 Polarization: -15.87 SS G_CDS: 2.03 Total: -13.84 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.67 Total: 46.30 kcal Total: -63.05 4.83 -58.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.312 kcal (2) G-P(sol) polarization free energy of solvation -63.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds