Wall clock time and date at job start Tue Mar 31 2020 15:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46904 * 2 1 4 4 H 1.08997 * 109.46916 * 56.15719 * 3 2 1 5 5 C 1.50700 * 109.46646 * 176.15575 * 3 2 1 6 6 H 1.08003 * 119.99864 * 120.00030 * 5 3 2 7 7 C 1.37877 * 120.00328 * 300.00186 * 5 3 2 8 8 N 1.31516 * 119.99854 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99873 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47129 * 90.00201 * 9 7 5 11 11 H 1.48498 * 109.46901 * 210.00293 * 9 7 5 12 12 H 1.48505 * 109.47345 * 330.00171 * 9 7 5 13 13 N 1.46898 * 109.47130 * 296.15708 * 3 2 1 14 14 C 1.46894 * 111.00035 * 156.42119 * 13 3 2 15 15 H 1.09004 * 109.47032 * 34.28118 * 14 13 3 16 16 C 1.50697 * 109.47432 * 154.28332 * 14 13 3 17 17 C 1.38225 * 120.41821 * 39.99896 * 16 14 13 18 18 N 1.31853 * 120.76853 * 179.97438 * 17 16 14 19 19 C 1.31888 * 121.72146 * 359.97438 * 18 17 16 20 20 C 1.38187 * 120.76592 * 0.02598 * 19 18 17 21 21 C 1.50703 * 120.41834 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.47071 * 0.02562 * 21 20 19 23 23 F 1.39899 * 109.46566 * 120.00133 * 21 20 19 24 24 F 1.39891 * 109.47207 * 240.00047 * 21 20 19 25 25 C 1.38624 * 120.42136 * 219.99619 * 16 14 13 26 26 C 1.53001 * 109.47043 * 274.28926 * 14 13 3 27 27 C 1.52999 * 117.49455 * 243.31162 * 26 14 13 28 28 C 1.52993 * 60.00070 * 252.50963 * 27 26 14 29 29 H 1.08994 * 109.47430 * 185.10016 * 1 2 3 30 30 H 1.09007 * 109.47449 * 305.09655 * 1 2 3 31 31 H 1.09000 * 109.47423 * 65.09552 * 1 2 3 32 32 H 1.08996 * 109.46669 * 240.00206 * 2 1 3 33 33 H 1.08997 * 109.47061 * 120.00420 * 2 1 3 34 34 H 0.97002 * 119.99946 * 179.97438 * 8 7 5 35 35 H 1.00905 * 110.99784 * 280.37518 * 13 3 2 36 36 H 1.08007 * 119.61767 * 0.26368 * 17 16 14 37 37 H 1.08000 * 119.61777 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.78819 * 0.04807 * 25 16 14 39 39 H 1.08990 * 115.55486 * 29.01681 * 26 14 13 40 40 H 1.09003 * 117.50130 * 359.97438 * 27 26 14 41 41 H 1.09002 * 117.49995 * 145.01578 * 27 26 14 42 42 H 1.09005 * 117.49919 * 252.50847 * 28 27 26 43 43 H 1.09000 * 117.49947 * 107.49026 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6215 1.9759 0.8535 5 6 3.5439 1.4436 0.0953 6 1 4.1344 1.8934 -0.6893 7 6 4.1662 0.8703 1.1839 8 7 5.4787 0.8716 1.2672 9 14 3.1450 0.0916 2.5404 10 1 2.9183 -1.3424 2.2282 11 1 3.8670 0.2088 3.8327 12 1 1.8378 0.7894 2.6386 13 7 1.6275 2.1077 -1.2431 14 6 1.5846 3.5659 -1.0707 15 1 2.3736 3.8740 -0.3847 16 6 1.7891 4.2358 -2.4051 17 6 1.1996 3.7209 -3.5443 18 7 1.3735 4.3017 -4.7152 19 6 2.1096 5.3880 -4.8479 20 6 2.7300 5.9596 -3.7534 21 6 3.5697 7.2006 -3.9141 22 9 3.5739 7.5900 -5.2578 23 9 3.0347 8.2300 -3.1323 24 9 4.8795 6.9341 -3.5012 25 6 2.5708 5.3762 -2.5055 26 6 0.2247 3.9720 -0.4992 27 6 -0.6673 4.8642 -1.3648 28 6 0.0247 5.4431 -0.1292 29 1 -0.3634 -1.0235 0.0913 30 1 -0.3634 0.5909 0.8409 31 1 -0.3634 0.4327 -0.9321 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9165 0.4686 2.0332 35 1 2.2334 1.8517 -2.0084 36 1 0.5855 2.8352 -3.4739 37 1 2.2295 5.8356 -5.8235 38 1 3.0444 5.8004 -1.6324 39 1 -0.2649 3.2250 0.1253 40 1 -0.2852 5.1622 -2.3412 41 1 -1.7441 4.7040 -1.3099 42 1 -0.5967 5.6638 0.7387 43 1 0.8620 6.1215 -0.2928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:37 Heat of formation + Delta-G solvation = -87.256323 kcal Electronic energy + Delta-G solvation = -28947.148921 eV Core-core repulsion = 24578.248170 eV Total energy + Delta-G solvation = -4368.900751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.29310 -47.82931 -47.73171 -40.77638 -37.96293 -35.88429 -33.26796 -33.03156 -32.03187 -30.68645 -27.38851 -26.56320 -25.11525 -23.73218 -22.52630 -22.44181 -22.11341 -20.26780 -19.48250 -18.61574 -18.59449 -17.99557 -17.07671 -16.98947 -16.34442 -15.94159 -15.25005 -14.80071 -14.65162 -14.46749 -14.19531 -14.04277 -13.96255 -13.93063 -13.90197 -13.55911 -13.29205 -13.22240 -12.95748 -12.80232 -12.58221 -12.12584 -11.92037 -11.69497 -11.44223 -11.40158 -10.97721 -10.69055 -10.46014 -10.23111 -10.08063 -9.98116 -9.83588 -9.61626 -9.51561 -9.32571 -9.12092 -8.65903 -7.59887 -6.20813 -4.23212 0.63550 1.02926 2.48753 3.19948 3.30592 3.32388 3.44912 3.52877 3.81900 3.96769 4.28112 4.28943 4.29557 4.59048 4.66915 4.71566 4.83678 5.06625 5.10855 5.15002 5.21314 5.38532 5.51288 5.67589 5.75648 5.80309 5.93488 5.95900 5.97812 6.03812 6.19847 6.21169 6.28702 6.35824 6.51316 6.61473 6.65488 6.86863 7.00469 7.15496 7.43514 7.68976 7.84440 8.17995 8.35000 8.80109 9.41837 10.91880 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003978 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.693988 B = 7037.707105 C = 7827.362174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.185 3.815 4 H 0.037 0.963 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.670 5.670 14 C 0.161 3.839 15 H 0.073 0.927 16 C -0.119 4.119 17 C 0.150 3.850 18 N -0.481 5.481 19 C 0.139 3.861 20 C -0.242 4.242 21 C 0.516 3.484 22 F -0.177 7.177 23 F -0.177 7.177 24 F -0.173 7.173 25 C -0.021 4.021 26 C -0.121 4.121 27 C -0.183 4.183 28 C -0.185 4.185 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.338 0.662 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 10.429 -8.350 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.055 0.945 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.300 5.300 14 C 0.050 3.950 15 H 0.091 0.909 16 C -0.122 4.122 17 C -0.007 4.007 18 N -0.188 5.188 19 C -0.018 4.018 20 C -0.245 4.245 21 C 0.461 3.539 22 F -0.159 7.159 23 F -0.158 7.158 24 F -0.154 7.154 25 C -0.047 4.047 26 C -0.140 4.140 27 C -0.220 4.220 28 C -0.223 4.223 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.192 0.808 37 H 0.183 0.817 38 H 0.162 0.838 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.248 9.945 -8.867 16.809 hybrid contribution 1.306 0.317 1.618 2.103 sum -8.942 10.261 -7.249 15.421 Atomic orbital electron populations 1.21724 0.97427 0.99209 1.01554 1.21815 0.93912 0.99143 1.00539 1.19639 0.94181 0.90569 0.88029 0.94541 1.21695 0.90283 1.39240 1.07700 0.91031 1.24993 0.94716 0.95203 0.97894 1.69914 1.08290 1.44535 1.30460 0.86827 0.80399 0.79951 0.80890 1.20446 1.22613 1.18890 1.60867 1.56866 1.03380 1.08837 1.19842 0.95417 0.89727 0.90037 0.90887 1.21118 0.97072 0.95635 0.98345 1.23117 0.93623 0.97567 0.86354 1.67975 1.15623 1.08598 1.26641 1.22659 0.90376 0.91049 0.97759 1.20962 1.06522 0.99097 0.97934 1.18094 0.78522 0.83558 0.73683 1.93160 1.96483 1.92087 1.34138 1.93220 1.86011 1.61673 1.74880 1.93250 1.38211 1.93849 1.90112 1.21307 0.93706 0.93510 0.96216 1.22310 0.96627 0.92762 1.02274 1.23040 0.98490 1.05158 0.95340 1.22944 1.03272 0.96989 0.99051 0.94911 0.94154 0.91924 0.92336 0.93677 0.92545 0.84410 0.80764 0.81747 0.83800 0.86791 0.89426 0.89201 0.88958 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.73 37.16 0.36 -1.99 16 2 C -0.12 -2.32 5.12 -26.73 -0.14 -2.46 16 3 C 0.18 3.86 1.40 -68.86 -0.10 3.76 16 4 H 0.04 0.80 6.68 -51.93 -0.35 0.46 16 5 C -0.55 -14.12 8.78 -34.44 -0.30 -14.43 16 6 H 0.07 2.02 8.01 -52.48 -0.42 1.60 16 7 C 0.08 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 9 Si 0.89 21.01 24.40 -169.99 -4.15 16.86 16 10 H -0.28 -6.45 6.84 56.52 0.39 -6.07 16 11 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 13 N -0.67 -11.46 4.96 -102.17 -0.51 -11.97 16 14 C 0.16 2.48 2.40 -68.87 -0.17 2.32 16 15 H 0.07 1.33 7.47 -51.93 -0.39 0.94 16 16 C -0.12 -1.64 3.05 -104.49 -0.32 -1.95 16 17 C 0.15 1.97 8.75 -17.55 -0.15 1.82 16 18 N -0.48 -6.33 10.36 -13.25 -0.14 -6.47 16 19 C 0.14 1.66 10.59 -17.55 -0.19 1.47 16 20 C -0.24 -2.97 5.38 -104.48 -0.56 -3.54 16 21 C 0.52 6.12 3.33 36.01 0.12 6.24 16 22 F -0.18 -1.96 16.00 2.25 0.04 -1.92 16 23 F -0.18 -2.12 17.25 2.25 0.04 -2.08 16 24 F -0.17 -2.28 17.25 2.25 0.04 -2.24 16 25 C -0.02 -0.28 9.39 -39.28 -0.37 -0.65 16 26 C -0.12 -1.67 5.72 -90.62 -0.52 -2.19 16 27 C -0.18 -2.20 9.46 -26.73 -0.25 -2.45 16 28 C -0.19 -2.25 10.12 -26.74 -0.27 -2.52 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.98 3.22 -51.93 -0.17 0.81 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.34 5.99 7.70 -39.29 -0.30 5.69 16 36 H 0.18 2.17 7.73 -52.48 -0.41 1.76 16 37 H 0.17 1.57 7.17 -52.49 -0.38 1.20 16 38 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.11 1.68 8.07 -51.93 -0.42 1.26 16 40 H 0.09 1.09 5.63 -51.93 -0.29 0.80 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -27.47 358.03 -7.12 -34.59 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.67 Total: 7.95 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.95 Total: -14.61 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.13 Total: -43.95 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.47 -7.12 -34.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.663 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds