Wall clock time and date at job start Tue Mar 31 2020 15:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46904 * 2 1 4 4 H 1.08997 * 109.46916 * 56.15719 * 3 2 1 5 5 C 1.50700 * 109.46646 * 176.15575 * 3 2 1 6 6 H 1.08003 * 119.99864 * 120.00030 * 5 3 2 7 7 C 1.37877 * 120.00328 * 300.00186 * 5 3 2 8 8 N 1.31516 * 119.99854 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99873 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47129 * 90.00201 * 9 7 5 11 11 H 1.48498 * 109.46901 * 210.00293 * 9 7 5 12 12 H 1.48505 * 109.47345 * 330.00171 * 9 7 5 13 13 N 1.46898 * 109.47130 * 296.15708 * 3 2 1 14 14 C 1.46894 * 111.00035 * 156.42119 * 13 3 2 15 15 H 1.09004 * 109.47032 * 34.28118 * 14 13 3 16 16 C 1.50697 * 109.47432 * 154.28332 * 14 13 3 17 17 C 1.38225 * 120.41821 * 39.99896 * 16 14 13 18 18 N 1.31853 * 120.76853 * 179.97438 * 17 16 14 19 19 C 1.31888 * 121.72146 * 359.97438 * 18 17 16 20 20 C 1.38187 * 120.76592 * 0.02598 * 19 18 17 21 21 C 1.50703 * 120.41834 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.47071 * 0.02562 * 21 20 19 23 23 F 1.39899 * 109.46566 * 120.00133 * 21 20 19 24 24 F 1.39891 * 109.47207 * 240.00047 * 21 20 19 25 25 C 1.38624 * 120.42136 * 219.99619 * 16 14 13 26 26 C 1.53001 * 109.47043 * 274.28926 * 14 13 3 27 27 C 1.52999 * 117.49455 * 243.31162 * 26 14 13 28 28 C 1.52993 * 60.00070 * 252.50963 * 27 26 14 29 29 H 1.08994 * 109.47430 * 185.10016 * 1 2 3 30 30 H 1.09007 * 109.47449 * 305.09655 * 1 2 3 31 31 H 1.09000 * 109.47423 * 65.09552 * 1 2 3 32 32 H 1.08996 * 109.46669 * 240.00206 * 2 1 3 33 33 H 1.08997 * 109.47061 * 120.00420 * 2 1 3 34 34 H 0.97002 * 119.99946 * 179.97438 * 8 7 5 35 35 H 1.00905 * 110.99784 * 280.37518 * 13 3 2 36 36 H 1.08007 * 119.61767 * 0.26368 * 17 16 14 37 37 H 1.08000 * 119.61777 * 179.97438 * 19 18 17 38 38 H 1.08004 * 120.78819 * 0.04807 * 25 16 14 39 39 H 1.08990 * 115.55486 * 29.01681 * 26 14 13 40 40 H 1.09003 * 117.50130 * 359.97438 * 27 26 14 41 41 H 1.09002 * 117.49995 * 145.01578 * 27 26 14 42 42 H 1.09005 * 117.49919 * 252.50847 * 28 27 26 43 43 H 1.09000 * 117.49947 * 107.49026 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6215 1.9759 0.8535 5 6 3.5439 1.4436 0.0953 6 1 4.1344 1.8934 -0.6893 7 6 4.1662 0.8703 1.1839 8 7 5.4787 0.8716 1.2672 9 14 3.1450 0.0916 2.5404 10 1 2.9183 -1.3424 2.2282 11 1 3.8670 0.2088 3.8327 12 1 1.8378 0.7894 2.6386 13 7 1.6275 2.1077 -1.2431 14 6 1.5846 3.5659 -1.0707 15 1 2.3736 3.8740 -0.3847 16 6 1.7891 4.2358 -2.4051 17 6 1.1996 3.7209 -3.5443 18 7 1.3735 4.3017 -4.7152 19 6 2.1096 5.3880 -4.8479 20 6 2.7300 5.9596 -3.7534 21 6 3.5697 7.2006 -3.9141 22 9 3.5739 7.5900 -5.2578 23 9 3.0347 8.2300 -3.1323 24 9 4.8795 6.9341 -3.5012 25 6 2.5708 5.3762 -2.5055 26 6 0.2247 3.9720 -0.4992 27 6 -0.6673 4.8642 -1.3648 28 6 0.0247 5.4431 -0.1292 29 1 -0.3634 -1.0235 0.0913 30 1 -0.3634 0.5909 0.8409 31 1 -0.3634 0.4327 -0.9321 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.9165 0.4686 2.0332 35 1 2.2334 1.8517 -2.0084 36 1 0.5855 2.8352 -3.4739 37 1 2.2295 5.8356 -5.8235 38 1 3.0444 5.8004 -1.6324 39 1 -0.2649 3.2250 0.1253 40 1 -0.2852 5.1622 -2.3412 41 1 -1.7441 4.7040 -1.3099 42 1 -0.5967 5.6638 0.7387 43 1 0.8620 6.1215 -0.2928 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:35 Heat of formation + Delta-G solvation = -102.660339 kcal Electronic energy + Delta-G solvation = -28947.816889 eV Core-core repulsion = 24578.248170 eV Total energy + Delta-G solvation = -4369.568720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.26820 -48.77972 -48.73451 -41.84132 -39.16745 -37.33334 -34.56326 -34.21290 -33.81652 -31.95014 -29.03761 -27.57909 -26.53206 -24.77997 -24.15257 -23.50003 -23.08006 -21.76014 -20.74223 -19.59385 -19.58177 -19.16033 -18.89131 -17.99673 -17.49233 -17.15312 -16.82878 -16.10858 -15.64972 -15.58392 -15.41873 -15.19671 -15.16321 -14.94798 -14.89436 -14.87123 -14.60735 -14.46448 -14.30667 -13.98678 -13.85671 -13.52164 -13.50400 -13.08031 -12.99625 -12.48635 -12.37368 -12.17816 -12.10216 -11.56052 -11.37031 -11.26530 -11.17526 -11.06908 -10.97472 -10.69355 -10.61791 -10.20093 -9.15114 -8.32482 -6.37422 -0.38610 -0.02506 1.31370 1.36092 1.45990 1.50196 2.30285 2.41681 2.54209 2.81167 2.94377 3.04163 3.28777 3.29916 3.44021 3.60435 3.64063 3.78047 4.01491 4.07712 4.17965 4.26152 4.38658 4.46465 4.50333 4.66815 4.70607 4.74518 4.79032 4.81809 5.00802 5.06078 5.06720 5.21641 5.28010 5.29641 5.34916 5.43168 5.51543 5.51993 5.68345 6.07008 6.35393 6.60300 6.68038 6.76802 7.31796 8.83713 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003978 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.693988 B = 7037.707105 C = 7827.362174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C 0.193 3.807 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.032 0.968 7 C 0.017 3.983 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.305 1.305 12 H -0.243 1.243 13 N -0.652 5.652 14 C 0.166 3.834 15 H 0.038 0.962 16 C -0.127 4.127 17 C 0.154 3.846 18 N -0.489 5.489 19 C 0.145 3.855 20 C -0.242 4.242 21 C 0.523 3.477 22 F -0.169 7.169 23 F -0.176 7.176 24 F -0.182 7.182 25 C -0.028 4.028 26 C -0.136 4.136 27 C -0.164 4.164 28 C -0.181 4.181 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.334 0.666 36 H 0.182 0.818 37 H 0.191 0.809 38 H 0.143 0.857 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 10.752 -8.986 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C 0.084 3.916 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.050 0.950 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.234 1.234 12 H -0.166 1.166 13 N -0.281 5.281 14 C 0.055 3.945 15 H 0.056 0.944 16 C -0.130 4.130 17 C -0.003 4.003 18 N -0.196 5.196 19 C -0.013 4.013 20 C -0.245 4.245 21 C 0.468 3.532 22 F -0.150 7.150 23 F -0.158 7.158 24 F -0.164 7.164 25 C -0.055 4.055 26 C -0.155 4.155 27 C -0.201 4.201 28 C -0.219 4.219 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.199 0.801 37 H 0.208 0.792 38 H 0.161 0.839 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.988 10.280 -9.523 19.107 hybrid contribution 2.215 0.319 1.698 2.809 sum -10.773 10.599 -7.825 17.019 Atomic orbital electron populations 1.21631 0.94243 1.00675 1.02399 1.21749 0.96710 0.97469 0.99612 1.19454 0.90710 0.91991 0.89486 0.95015 1.22054 0.92882 1.37198 1.05996 0.94986 1.25823 0.95555 0.96168 1.00567 1.70070 1.10326 1.46792 1.31560 0.85866 0.79561 0.79627 0.77409 1.19478 1.23373 1.16614 1.60877 1.55735 1.04497 1.06967 1.19726 0.95670 0.88525 0.90545 0.94375 1.20918 0.98218 0.96119 0.97718 1.23177 0.93382 0.97612 0.86094 1.68039 1.16125 1.09084 1.26365 1.23085 0.89182 0.90380 0.98624 1.20989 1.06603 0.99282 0.97660 1.17959 0.77974 0.83362 0.73941 1.93175 1.96411 1.91988 1.33470 1.93222 1.85950 1.61630 1.74972 1.93235 1.38924 1.93926 1.90279 1.21379 0.93630 0.93620 0.96828 1.22151 0.95986 0.93654 1.03688 1.23034 0.98984 1.03205 0.94875 1.23026 1.03394 0.95520 0.99910 0.93043 0.93798 0.90709 0.92725 0.95210 0.92733 0.84903 0.80069 0.79195 0.83948 0.87382 0.89737 0.87531 0.87535 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.73 71.98 0.70 -3.27 16 2 C -0.12 -4.51 5.12 30.60 0.16 -4.35 16 3 C 0.19 8.03 1.40 44.17 0.06 8.09 16 4 H 0.03 1.38 6.68 -2.39 -0.02 1.36 16 5 C -0.54 -28.70 8.78 25.60 0.22 -28.48 16 6 H 0.03 1.90 8.01 -2.91 -0.02 1.88 16 7 C 0.02 0.95 5.45 84.65 0.46 1.41 16 8 N -0.95 -57.84 13.96 21.45 0.30 -57.54 16 9 Si 0.95 43.54 24.40 68.60 1.67 45.21 16 10 H -0.27 -11.87 6.84 99.48 0.68 -11.19 16 11 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.24 -10.18 6.53 99.48 0.65 -9.53 16 13 N -0.65 -22.16 4.96 -477.16 -2.37 -24.52 16 14 C 0.17 5.14 2.40 44.17 0.11 5.25 16 15 H 0.04 1.45 7.47 -2.39 -0.02 1.43 16 16 C -0.13 -3.44 3.05 -19.78 -0.06 -3.50 16 17 C 0.15 3.84 8.75 84.69 0.74 4.58 16 18 N -0.49 -11.97 10.36 -195.83 -2.03 -13.99 16 19 C 0.14 3.16 10.59 84.67 0.90 4.06 16 20 C -0.24 -5.68 5.38 -19.77 -0.11 -5.78 16 21 C 0.52 11.77 3.33 71.24 0.24 12.00 16 22 F -0.17 -3.41 16.00 44.97 0.72 -2.70 16 23 F -0.18 -4.03 17.25 44.97 0.78 -3.26 16 24 F -0.18 -4.72 17.25 44.97 0.78 -3.94 16 25 C -0.03 -0.74 9.39 22.47 0.21 -0.53 16 26 C -0.14 -3.57 5.72 -10.79 -0.06 -3.63 16 27 C -0.16 -3.54 9.46 30.59 0.29 -3.25 16 28 C -0.18 -4.10 10.12 30.59 0.31 -3.79 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 2.06 7.87 -2.39 -0.02 2.04 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.03 1.24 3.22 -2.39 -0.01 1.23 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.33 11.92 7.70 -89.69 -0.69 11.23 16 36 H 0.18 4.21 7.73 -2.91 -0.02 4.19 16 37 H 0.19 3.10 7.17 -2.91 -0.02 3.08 16 38 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.11 3.00 8.07 -2.39 -0.02 2.98 16 40 H 0.08 1.91 5.63 -2.39 -0.01 1.90 16 41 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.09 2.00 8.11 -2.39 -0.02 1.98 16 Total: -1.00 -60.32 358.03 4.29 -56.03 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.28 Total: 25.89 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.17 Total: -21.19 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -4.10 Total: -96.06 kcal Atomic # 9 Polarization: -12.16 SS G_CDS: 2.27 Total: -9.89 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.67 Total: 45.21 kcal Total: -60.32 4.29 -56.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.631 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds