Wall clock time and date at job start Tue Mar 31 2020 15:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47219 * 2 1 4 4 H 1.08997 * 109.47365 * 306.04286 * 3 2 1 5 5 C 1.50701 * 109.47525 * 186.04366 * 3 2 1 6 6 H 1.08004 * 120.00421 * 244.70951 * 5 3 2 7 7 C 1.37876 * 119.99744 * 64.70133 * 5 3 2 8 8 N 1.31512 * 120.00075 * 192.45915 * 7 5 3 9 9 Si 1.86799 * 120.00007 * 12.46214 * 7 5 3 10 10 H 1.48502 * 109.47364 * 91.42611 * 9 7 5 11 11 H 1.48499 * 109.47120 * 211.42584 * 9 7 5 12 12 H 1.48501 * 109.47209 * 331.42391 * 9 7 5 13 13 N 1.46907 * 109.47146 * 66.04437 * 3 2 1 14 14 C 1.46902 * 111.00032 * 266.77024 * 13 3 2 15 15 H 1.08995 * 109.46977 * 38.57070 * 14 13 3 16 16 C 1.50694 * 109.47020 * 158.56983 * 14 13 3 17 17 C 1.38227 * 120.41921 * 40.00263 * 16 14 13 18 18 N 1.31858 * 120.76701 * 180.02562 * 17 16 14 19 19 C 1.31889 * 121.71932 * 0.02562 * 18 17 16 20 20 C 1.38177 * 120.76897 * 0.25227 * 19 18 17 21 21 C 1.50701 * 120.41756 * 179.75053 * 20 19 18 22 22 F 1.39891 * 109.47189 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47266 * 119.99891 * 21 20 19 24 24 F 1.39900 * 109.46670 * 239.99620 * 21 20 19 25 25 C 1.38627 * 120.41892 * 220.02072 * 16 14 13 26 26 C 1.53001 * 109.47019 * 278.56993 * 14 13 3 27 27 C 1.52992 * 117.49995 * 248.62159 * 26 14 13 28 28 C 1.52998 * 117.49589 * 179.97438 * 26 14 13 29 29 H 1.08997 * 109.47111 * 303.14145 * 1 2 3 30 30 H 1.09000 * 109.46763 * 63.13991 * 1 2 3 31 31 H 1.08992 * 109.47063 * 183.13536 * 1 2 3 32 32 H 1.08990 * 109.47755 * 239.99637 * 2 1 3 33 33 H 1.09004 * 109.46967 * 119.99646 * 2 1 3 34 34 H 0.96999 * 120.00118 * 180.02562 * 8 7 5 35 35 H 1.00907 * 110.99880 * 142.81704 * 13 3 2 36 36 H 1.08007 * 119.61927 * 0.04203 * 17 16 14 37 37 H 1.08001 * 119.61337 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.79414 * 359.95997 * 25 16 14 39 39 H 1.09006 * 115.54869 * 34.33492 * 26 14 13 40 40 H 1.09004 * 117.50218 * 0.02562 * 27 26 14 41 41 H 1.09001 * 117.50129 * 145.02393 * 27 26 14 42 42 H 1.09007 * 117.49845 * 214.97931 * 28 26 14 43 43 H 1.09000 * 117.50172 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8309 5 6 3.5396 1.4452 -0.1496 6 1 4.1616 1.8158 0.6518 7 6 4.1175 0.9743 -1.3095 8 7 5.4118 0.7456 -1.3534 9 14 3.0620 0.6614 -2.8186 10 1 3.0285 1.8835 -3.6615 11 1 3.6365 -0.4632 -3.5999 12 1 1.6818 0.3149 -2.3941 13 7 1.6731 2.0916 1.2657 14 6 0.3960 2.8066 1.1398 15 1 -0.2868 2.2244 0.5210 16 6 -0.2074 3.0015 2.5069 17 6 0.5928 3.3313 3.5846 18 7 0.0722 3.5030 4.7838 19 6 -1.2212 3.3683 5.0040 20 6 -2.0822 3.0343 3.9762 21 6 -3.5579 2.8769 4.2379 22 9 -3.8198 3.1164 5.5910 23 9 -4.2705 3.7919 3.4555 24 9 -3.9534 1.5756 3.9100 25 6 -1.5721 2.8520 2.6996 26 6 0.6369 4.1703 0.4895 27 6 0.4394 5.4129 1.3599 28 6 -0.5789 5.0726 0.2692 29 1 -0.3633 0.5618 0.8605 30 1 -0.3633 0.4643 -0.9168 31 1 -0.3633 -1.0261 0.0562 32 1 1.8934 -0.5138 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 5.8184 0.4148 -2.1695 35 1 2.4049 2.7112 1.5798 36 1 1.6569 3.4500 3.4427 37 1 -1.6112 3.5164 6.0002 38 1 -2.2219 2.5951 1.8761 39 1 1.4283 4.2007 -0.2596 40 1 0.1382 5.2589 2.3961 41 1 1.1009 6.2611 1.1839 42 1 -0.5870 5.6971 -0.6242 43 1 -1.5505 4.6945 0.5873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:43 Heat of formation + Delta-G solvation = -83.600704 kcal Electronic energy + Delta-G solvation = -29038.541472 eV Core-core repulsion = 24669.799241 eV Total energy + Delta-G solvation = -4368.742232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.38534 -47.91598 -47.83296 -40.85950 -38.21318 -35.85781 -33.28769 -32.95163 -31.98248 -30.73774 -27.86266 -26.62304 -24.96970 -23.81581 -22.59955 -22.40094 -22.19204 -20.16444 -19.71372 -18.71062 -18.67127 -18.20047 -17.12386 -17.01257 -16.42906 -15.93959 -15.36924 -14.88291 -14.73891 -14.58620 -14.28766 -14.07001 -14.00384 -13.98125 -13.88735 -13.63884 -13.37105 -13.19224 -12.98843 -12.70962 -12.60281 -12.30202 -12.10410 -11.74463 -11.53203 -11.32607 -10.91767 -10.89418 -10.53001 -10.31033 -10.16139 -10.04435 -9.94380 -9.60015 -9.42029 -9.17834 -9.12402 -8.58780 -7.70070 -6.20306 -4.18211 0.59643 0.99075 2.40286 3.19996 3.30446 3.32646 3.40803 3.44793 3.73262 3.83586 4.19373 4.25688 4.32081 4.52244 4.57989 4.72929 4.79863 4.93177 5.00270 5.11670 5.14242 5.26642 5.31481 5.59234 5.64487 5.67839 5.80185 5.90646 5.94135 5.97870 6.08619 6.12727 6.13777 6.27399 6.41886 6.55749 6.64002 6.88007 6.91644 7.32868 7.52809 7.66563 7.80049 8.15727 8.47636 8.86474 9.43846 10.92377 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.003584 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.693099 B = 7810.522740 C = 8076.503997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.194 3.806 4 H 0.006 0.994 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.860 3.140 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.247 1.247 13 N -0.667 5.667 14 C 0.146 3.854 15 H 0.100 0.900 16 C -0.100 4.100 17 C 0.155 3.845 18 N -0.479 5.479 19 C 0.138 3.862 20 C -0.242 4.242 21 C 0.517 3.483 22 F -0.177 7.177 23 F -0.177 7.177 24 F -0.175 7.175 25 C -0.029 4.029 26 C -0.175 4.175 27 C -0.181 4.181 28 C -0.179 4.179 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.265 0.735 35 H 0.344 0.656 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 6.742 8.323 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C 0.086 3.914 4 H 0.023 0.977 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.297 5.297 14 C 0.035 3.965 15 H 0.118 0.882 16 C -0.103 4.103 17 C -0.001 4.001 18 N -0.186 5.186 19 C -0.020 4.020 20 C -0.245 4.245 21 C 0.462 3.538 22 F -0.158 7.158 23 F -0.158 7.158 24 F -0.156 7.156 25 C -0.055 4.055 26 C -0.194 4.194 27 C -0.218 4.218 28 C -0.217 4.217 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.186 0.814 37 H 0.182 0.818 38 H 0.159 0.841 39 H 0.137 0.863 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.420 6.290 9.181 19.836 hybrid contribution -0.966 0.273 -2.180 2.400 sum -17.385 6.563 7.001 19.858 Atomic orbital electron populations 1.22008 0.98933 1.00049 1.00340 1.21933 0.92498 0.99454 1.01269 1.19448 0.95891 0.90610 0.85491 0.97677 1.21099 0.89131 1.43634 1.02954 0.90449 1.24880 0.94714 0.94197 0.98639 1.69945 1.10782 1.44101 1.27851 0.87290 0.82482 0.78101 0.83419 1.20796 1.21336 1.17090 1.60717 1.02716 1.33194 1.33058 1.20321 0.95076 0.91562 0.89576 0.88182 1.20942 0.92816 0.98188 0.98334 1.22983 1.01133 0.89464 0.86568 1.67968 1.12478 1.14458 1.23741 1.22648 0.88733 0.92152 0.98435 1.20926 0.92541 1.13104 0.97970 1.18105 0.87713 0.74034 0.73975 1.93162 1.95021 1.94223 1.33391 1.93221 1.80756 1.67073 1.74765 1.93234 1.92281 1.37798 1.92328 1.21188 0.95580 0.93436 0.95288 1.23334 1.01157 0.91872 1.03073 1.23069 1.03084 0.99328 0.96313 1.22886 0.94268 1.03915 1.00650 0.92595 0.94218 0.94335 0.92689 0.92111 0.92556 0.83698 0.81429 0.81775 0.84100 0.86335 0.89117 0.88880 0.88924 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.74 37.16 0.32 -2.31 16 2 C -0.11 -2.31 4.82 -26.73 -0.13 -2.44 16 3 C 0.19 4.05 1.55 -68.86 -0.11 3.95 16 4 H 0.01 0.12 6.03 -51.93 -0.31 -0.19 16 5 C -0.53 -13.56 9.02 -34.44 -0.31 -13.87 16 6 H 0.08 2.15 7.79 -52.48 -0.41 1.74 16 7 C 0.08 2.13 5.36 -17.82 -0.10 2.03 16 8 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 9 Si 0.86 19.97 25.76 -169.99 -4.38 15.59 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.25 -5.34 5.31 56.52 0.30 -5.04 16 13 N -0.67 -11.57 5.47 -102.17 -0.56 -12.13 16 14 C 0.15 2.08 1.60 -68.87 -0.11 1.97 16 15 H 0.10 1.47 5.11 -51.93 -0.27 1.20 16 16 C -0.10 -1.28 3.41 -104.49 -0.36 -1.64 16 17 C 0.16 2.02 8.74 -17.54 -0.15 1.87 16 18 N -0.48 -6.21 10.36 -13.25 -0.14 -6.34 16 19 C 0.14 1.56 10.59 -17.55 -0.19 1.37 16 20 C -0.24 -2.69 5.38 -104.48 -0.56 -3.26 16 21 C 0.52 5.43 3.33 36.01 0.12 5.55 16 22 F -0.18 -1.78 16.00 2.25 0.04 -1.74 16 23 F -0.18 -1.90 17.24 2.25 0.04 -1.86 16 24 F -0.18 -1.98 17.25 2.25 0.04 -1.94 16 25 C -0.03 -0.33 8.99 -39.28 -0.35 -0.69 16 26 C -0.17 -2.36 5.43 -90.62 -0.49 -2.85 16 27 C -0.18 -2.15 9.50 -26.71 -0.25 -2.40 16 28 C -0.18 -2.08 10.02 -26.71 -0.27 -2.34 16 29 H 0.06 0.88 5.70 -51.93 -0.30 0.59 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.20 4.67 -51.93 -0.24 0.96 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.34 6.00 7.06 -39.29 -0.28 5.72 16 36 H 0.17 2.13 7.15 -52.48 -0.38 1.75 16 37 H 0.17 1.48 7.17 -52.49 -0.38 1.10 16 38 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.12 1.84 7.79 -51.93 -0.40 1.44 16 40 H 0.09 1.09 5.41 -51.93 -0.28 0.81 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -27.49 350.73 -7.25 -34.74 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.41 Total: 8.53 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.93 Total: -15.05 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.08 Total: -43.55 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.11 Total: -5.54 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.38 Total: 15.59 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.49 -7.25 -34.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.861 kcal (2) G-P(sol) polarization free energy of solvation -27.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds