Wall clock time and date at job start Tue Mar 31 2020 15:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47219 * 2 1 4 4 H 1.08997 * 109.47365 * 306.04286 * 3 2 1 5 5 C 1.50701 * 109.47525 * 186.04366 * 3 2 1 6 6 H 1.08004 * 120.00421 * 244.70951 * 5 3 2 7 7 C 1.37876 * 119.99744 * 64.70133 * 5 3 2 8 8 N 1.31512 * 120.00075 * 192.45915 * 7 5 3 9 9 Si 1.86799 * 120.00007 * 12.46214 * 7 5 3 10 10 H 1.48502 * 109.47364 * 91.42611 * 9 7 5 11 11 H 1.48499 * 109.47120 * 211.42584 * 9 7 5 12 12 H 1.48501 * 109.47209 * 331.42391 * 9 7 5 13 13 N 1.46907 * 109.47146 * 66.04437 * 3 2 1 14 14 C 1.46902 * 111.00032 * 266.77024 * 13 3 2 15 15 H 1.08995 * 109.46977 * 38.57070 * 14 13 3 16 16 C 1.50694 * 109.47020 * 158.56983 * 14 13 3 17 17 C 1.38227 * 120.41921 * 40.00263 * 16 14 13 18 18 N 1.31858 * 120.76701 * 180.02562 * 17 16 14 19 19 C 1.31889 * 121.71932 * 0.02562 * 18 17 16 20 20 C 1.38177 * 120.76897 * 0.25227 * 19 18 17 21 21 C 1.50701 * 120.41756 * 179.75053 * 20 19 18 22 22 F 1.39891 * 109.47189 * 359.97438 * 21 20 19 23 23 F 1.39900 * 109.47266 * 119.99891 * 21 20 19 24 24 F 1.39900 * 109.46670 * 239.99620 * 21 20 19 25 25 C 1.38627 * 120.41892 * 220.02072 * 16 14 13 26 26 C 1.53001 * 109.47019 * 278.56993 * 14 13 3 27 27 C 1.52992 * 117.49995 * 248.62159 * 26 14 13 28 28 C 1.52998 * 117.49589 * 179.97438 * 26 14 13 29 29 H 1.08997 * 109.47111 * 303.14145 * 1 2 3 30 30 H 1.09000 * 109.46763 * 63.13991 * 1 2 3 31 31 H 1.08992 * 109.47063 * 183.13536 * 1 2 3 32 32 H 1.08990 * 109.47755 * 239.99637 * 2 1 3 33 33 H 1.09004 * 109.46967 * 119.99646 * 2 1 3 34 34 H 0.96999 * 120.00118 * 180.02562 * 8 7 5 35 35 H 1.00907 * 110.99880 * 142.81704 * 13 3 2 36 36 H 1.08007 * 119.61927 * 0.04203 * 17 16 14 37 37 H 1.08001 * 119.61337 * 179.97438 * 19 18 17 38 38 H 1.07996 * 120.79414 * 359.95997 * 25 16 14 39 39 H 1.09006 * 115.54869 * 34.33492 * 26 14 13 40 40 H 1.09004 * 117.50218 * 0.02562 * 27 26 14 41 41 H 1.09001 * 117.50129 * 145.02393 * 27 26 14 42 42 H 1.09007 * 117.49845 * 214.97931 * 28 26 14 43 43 H 1.09000 * 117.50172 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8309 5 6 3.5396 1.4452 -0.1496 6 1 4.1616 1.8158 0.6518 7 6 4.1175 0.9743 -1.3095 8 7 5.4118 0.7456 -1.3534 9 14 3.0620 0.6614 -2.8186 10 1 3.0285 1.8835 -3.6615 11 1 3.6365 -0.4632 -3.5999 12 1 1.6818 0.3149 -2.3941 13 7 1.6731 2.0916 1.2657 14 6 0.3960 2.8066 1.1398 15 1 -0.2868 2.2244 0.5210 16 6 -0.2074 3.0015 2.5069 17 6 0.5928 3.3313 3.5846 18 7 0.0722 3.5030 4.7838 19 6 -1.2212 3.3683 5.0040 20 6 -2.0822 3.0343 3.9762 21 6 -3.5579 2.8769 4.2379 22 9 -3.8198 3.1164 5.5910 23 9 -4.2705 3.7919 3.4555 24 9 -3.9534 1.5756 3.9100 25 6 -1.5721 2.8520 2.6996 26 6 0.6369 4.1703 0.4895 27 6 0.4394 5.4129 1.3599 28 6 -0.5789 5.0726 0.2692 29 1 -0.3633 0.5618 0.8605 30 1 -0.3633 0.4643 -0.9168 31 1 -0.3633 -1.0261 0.0562 32 1 1.8934 -0.5138 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 5.8184 0.4148 -2.1695 35 1 2.4049 2.7112 1.5798 36 1 1.6569 3.4500 3.4427 37 1 -1.6112 3.5164 6.0002 38 1 -2.2219 2.5951 1.8761 39 1 1.4283 4.2007 -0.2596 40 1 0.1382 5.2589 2.3961 41 1 1.1009 6.2611 1.1839 42 1 -0.5870 5.6971 -0.6242 43 1 -1.5505 4.6945 0.5873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:41 Heat of formation + Delta-G solvation = -99.209698 kcal Electronic energy + Delta-G solvation = -29039.218329 eV Core-core repulsion = 24669.799241 eV Total energy + Delta-G solvation = -4369.419089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.20517 -48.72257 -48.66454 -41.84175 -39.36050 -37.26205 -34.53923 -34.16809 -33.55217 -32.01762 -29.43939 -27.52948 -26.34710 -24.76131 -24.20003 -23.39004 -23.11589 -21.53992 -21.00203 -19.54497 -19.52832 -19.35245 -18.63872 -17.98500 -17.54205 -17.13222 -16.87040 -15.99550 -15.61785 -15.55921 -15.43071 -15.10238 -15.08297 -14.87392 -14.84390 -14.82164 -14.71593 -14.27377 -14.22941 -14.01876 -13.88535 -13.55736 -13.47326 -13.20782 -12.73111 -12.56289 -12.42722 -12.39567 -12.01661 -11.72137 -11.37962 -11.17168 -11.11348 -11.04990 -10.94982 -10.64921 -10.52624 -10.14185 -9.12615 -8.29205 -6.29961 -0.32952 0.05770 1.34808 1.39705 1.48055 1.55894 2.36045 2.46145 2.59789 2.79820 2.93995 3.06537 3.35075 3.36179 3.47503 3.67955 3.71602 3.82678 3.86963 3.99718 4.13398 4.18519 4.34989 4.47732 4.52126 4.60760 4.64900 4.70886 4.74342 4.80748 4.93684 4.99937 5.06699 5.18833 5.22520 5.23000 5.29239 5.39898 5.43500 5.58354 5.82840 6.01530 6.49616 6.66026 6.75894 6.86173 7.36285 8.87124 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.003584 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.693099 B = 7810.522740 C = 8076.503997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.203 3.797 4 H 0.008 0.992 5 C -0.527 4.527 6 H 0.039 0.961 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.920 3.080 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.218 1.218 13 N -0.668 5.668 14 C 0.154 3.846 15 H 0.103 0.897 16 C -0.106 4.106 17 C 0.147 3.853 18 N -0.495 5.495 19 C 0.139 3.861 20 C -0.239 4.239 21 C 0.524 3.476 22 F -0.173 7.173 23 F -0.176 7.176 24 F -0.178 7.178 25 C -0.024 4.024 26 C -0.192 4.192 27 C -0.174 4.174 28 C -0.162 4.162 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.339 0.661 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.160 0.840 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 7.134 8.366 23.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.094 3.906 4 H 0.026 0.974 5 C -0.565 4.565 6 H 0.057 0.943 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.140 1.140 13 N -0.298 5.298 14 C 0.043 3.957 15 H 0.120 0.880 16 C -0.108 4.108 17 C -0.009 4.009 18 N -0.203 5.203 19 C -0.018 4.018 20 C -0.243 4.243 21 C 0.469 3.531 22 F -0.154 7.154 23 F -0.157 7.157 24 F -0.160 7.160 25 C -0.050 4.050 26 C -0.212 4.212 27 C -0.211 4.211 28 C -0.200 4.200 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.204 0.796 38 H 0.177 0.823 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.976 6.695 9.242 23.006 hybrid contribution 0.155 0.210 -2.042 2.059 sum -19.821 6.905 7.200 22.189 Atomic orbital electron populations 1.21918 0.95610 1.01565 1.01412 1.21851 0.95468 0.98172 0.99851 1.19232 0.92540 0.91710 0.87167 0.97431 1.21441 0.91699 1.41820 1.01525 0.94279 1.25710 0.95726 0.94376 1.01865 1.70096 1.12975 1.46515 1.28689 0.86322 0.82196 0.77689 0.79336 1.20530 1.21931 1.14010 1.60640 1.04015 1.34073 1.31033 1.20239 0.93183 0.91602 0.90710 0.87976 1.20704 0.93391 0.99482 0.97240 1.22930 1.01070 0.89934 0.86976 1.67980 1.13469 1.15178 1.23652 1.23032 0.88175 0.91080 0.99534 1.20971 0.92946 1.12628 0.97736 1.17918 0.87182 0.73859 0.74106 1.93174 1.94954 1.94177 1.33101 1.93228 1.80687 1.67031 1.74786 1.93232 1.92267 1.38077 1.92381 1.21371 0.95119 0.92449 0.96099 1.23108 1.02147 0.92300 1.03608 1.23068 1.03267 0.98366 0.96420 1.22980 0.93935 1.02401 1.00666 0.91460 0.93179 0.92678 0.94151 0.93627 0.92728 0.84176 0.82141 0.79638 0.82259 0.88795 0.89029 0.88550 0.87969 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 8.74 71.98 0.63 -3.89 16 2 C -0.11 -4.55 4.82 30.59 0.15 -4.40 16 3 C 0.20 8.42 1.55 44.17 0.07 8.49 16 4 H 0.01 0.33 6.03 -2.39 -0.01 0.32 16 5 C -0.53 -27.84 9.02 25.60 0.23 -27.61 16 6 H 0.04 2.31 7.79 -2.91 -0.02 2.28 16 7 C 0.02 1.19 5.36 84.65 0.45 1.64 16 8 N -0.94 -57.04 13.96 21.45 0.30 -56.74 16 9 Si 0.92 41.38 25.76 68.60 1.77 43.15 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.22 -8.68 5.31 99.48 0.53 -8.15 16 13 N -0.67 -23.13 5.47 -477.16 -2.61 -25.74 16 14 C 0.15 4.13 1.60 44.17 0.07 4.20 16 15 H 0.10 2.71 5.11 -2.39 -0.01 2.70 16 16 C -0.11 -2.50 3.41 -19.78 -0.07 -2.56 16 17 C 0.15 3.69 8.74 84.69 0.74 4.43 16 18 N -0.50 -12.10 10.36 -195.84 -2.03 -14.13 16 19 C 0.14 2.81 10.59 84.67 0.90 3.70 16 20 C -0.24 -4.63 5.38 -19.77 -0.11 -4.74 16 21 C 0.52 9.41 3.33 71.24 0.24 9.65 16 22 F -0.17 -2.97 16.00 44.97 0.72 -2.25 16 23 F -0.18 -3.22 17.24 44.97 0.78 -2.44 16 24 F -0.18 -3.49 17.25 44.97 0.78 -2.71 16 25 C -0.02 -0.49 8.99 22.47 0.20 -0.29 16 26 C -0.19 -4.95 5.43 -10.80 -0.06 -5.01 16 27 C -0.17 -3.86 9.50 30.61 0.29 -3.57 16 28 C -0.16 -3.31 10.02 30.61 0.31 -3.01 16 29 H 0.07 1.90 5.70 -2.39 -0.01 1.88 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.70 4.67 -2.39 -0.01 1.69 16 33 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.34 12.27 7.06 -89.69 -0.63 11.64 16 36 H 0.16 4.14 7.15 -2.91 -0.02 4.12 16 37 H 0.19 2.82 7.17 -2.91 -0.02 2.80 16 38 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.09 2.91 7.79 -2.38 -0.02 2.90 16 40 H 0.09 2.04 5.41 -2.39 -0.01 2.03 16 41 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.10 1.84 7.71 -2.39 -0.02 1.82 16 Total: -1.00 -60.51 350.73 3.99 -56.52 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.25 Total: 27.31 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.04 Total: -22.96 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -4.34 Total: -96.61 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 2.27 Total: -7.41 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.77 Total: 43.15 kcal Total: -60.51 3.99 -56.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.694 kcal (2) G-P(sol) polarization free energy of solvation -60.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds