Wall clock time and date at job start Tue Mar 31 2020 15:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 H 1.09003 * 109.47018 * 185.15512 * 3 2 1 5 5 C 1.50698 * 109.46781 * 305.14992 * 3 2 1 6 6 H 1.07998 * 119.99936 * 120.00981 * 5 3 2 7 7 C 1.37877 * 120.00435 * 300.00088 * 5 3 2 8 8 N 1.31522 * 119.99810 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00217 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47201 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46939 * 119.99857 * 9 7 5 12 12 H 1.48494 * 109.47292 * 239.99971 * 9 7 5 13 13 N 1.46892 * 109.47200 * 65.15212 * 3 2 1 14 14 C 1.46903 * 111.00014 * 85.59516 * 13 3 2 15 15 H 1.09004 * 109.47003 * 323.52922 * 14 13 3 16 16 C 1.50706 * 109.47068 * 203.53332 * 14 13 3 17 17 C 1.38667 * 120.78712 * 320.02368 * 16 14 13 18 18 C 1.38181 * 119.16081 * 179.97438 * 17 16 14 19 19 N 1.31890 * 120.76848 * 0.02562 * 18 17 16 20 20 C 1.31856 * 121.72150 * 359.69029 * 19 18 17 21 21 C 1.50697 * 119.61845 * 180.28769 * 20 19 18 22 22 F 1.39900 * 109.47294 * 270.28602 * 21 20 19 23 23 F 1.39904 * 109.46888 * 30.28893 * 21 20 19 24 24 F 1.39898 * 109.46962 * 150.28406 * 21 20 19 25 25 C 1.38228 * 120.76410 * 0.57441 * 20 19 18 26 26 C 1.52998 * 109.47541 * 83.53458 * 14 13 3 27 27 C 1.53004 * 117.49572 * 248.62251 * 26 14 13 28 28 C 1.52997 * 117.49861 * 180.02562 * 26 14 13 29 29 H 1.09006 * 109.47120 * 294.81985 * 1 2 3 30 30 H 1.08997 * 109.47668 * 54.81920 * 1 2 3 31 31 H 1.08999 * 109.47300 * 174.82771 * 1 2 3 32 32 H 1.09002 * 109.47000 * 239.99810 * 2 1 3 33 33 H 1.09004 * 109.47108 * 119.99454 * 2 1 3 34 34 H 0.96992 * 119.99776 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00184 * 321.63657 * 13 3 2 36 36 H 1.08002 * 120.42294 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.62022 * 179.97438 * 18 17 16 38 38 H 1.07996 * 120.41871 * 179.73306 * 25 20 19 39 39 H 1.09000 * 115.54766 * 34.32377 * 26 14 13 40 40 H 1.09001 * 117.49924 * 0.02562 * 27 26 14 41 41 H 1.09000 * 117.49397 * 145.01722 * 27 26 14 42 42 H 1.09004 * 117.49626 * 214.97833 * 28 26 14 43 43 H 1.08991 * 117.50144 * 359.97189 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0923 5 6 1.4361 2.1887 -1.1617 6 1 0.8270 3.0627 -0.9843 7 6 1.6614 1.7558 -2.4512 8 7 2.4029 0.6912 -2.6674 9 14 0.9135 2.6812 -3.8913 10 1 0.1280 3.8348 -3.3841 11 1 1.9968 3.1730 -4.7800 12 1 0.0216 1.7718 -4.6546 13 7 1.6545 2.0982 1.2567 14 6 2.6392 1.8309 2.3136 15 1 3.0157 0.8131 2.2104 16 6 1.9848 1.9900 3.6618 17 6 1.0813 3.0156 3.8955 18 6 0.5007 3.1299 5.1443 19 7 0.7975 2.2785 6.1068 20 6 1.6477 1.2883 5.9187 21 6 1.9474 0.3390 7.0500 22 9 3.0277 0.8259 7.7937 23 9 0.8240 0.2291 7.8766 24 9 2.2686 -0.9194 6.5301 25 6 2.2717 1.1144 4.6976 26 6 3.8005 2.8193 2.1905 27 6 5.1591 2.2628 1.7596 28 6 4.9376 2.7033 3.2076 29 1 -0.3634 0.4314 0.9328 30 1 -0.3634 0.5921 -0.8399 31 1 -0.3634 -1.0235 -0.0926 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.5616 0.3869 -3.5746 35 1 0.7298 1.8144 1.5438 36 1 0.8344 3.7163 3.1116 37 1 -0.2037 3.9262 5.3346 38 1 2.9703 0.3041 4.5510 39 1 3.5331 3.8182 1.8458 40 1 5.2254 1.1927 1.5634 41 1 5.7857 2.8957 1.1312 42 1 5.4186 3.6261 3.5321 43 1 4.8582 1.9232 3.9645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:37 Heat of formation + Delta-G solvation = -92.539148 kcal Electronic energy + Delta-G solvation = -28735.764548 eV Core-core repulsion = 24366.634717 eV Total energy + Delta-G solvation = -4369.129832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.26633 -47.81032 -47.71240 -40.64394 -38.05668 -35.79121 -33.67434 -32.23052 -31.88942 -30.24708 -27.12555 -26.66038 -24.99832 -23.56267 -23.20913 -22.41819 -21.98251 -20.28631 -19.20736 -18.64492 -18.53057 -18.20050 -16.57571 -16.31117 -15.97966 -15.56077 -15.07958 -14.80973 -14.66625 -14.59653 -14.45572 -14.18234 -14.08831 -13.88488 -13.87663 -13.75448 -13.44515 -12.91421 -12.72209 -12.69594 -12.27783 -12.00700 -11.69461 -11.42012 -11.31217 -11.00179 -10.82861 -10.60593 -10.24536 -10.12862 -9.99849 -9.93051 -9.67942 -9.66948 -9.53488 -9.49565 -9.03359 -8.40915 -7.46813 -6.04599 -4.06039 0.64269 1.01290 2.36243 3.26595 3.35562 3.36566 3.39365 3.41386 3.76115 4.02944 4.28246 4.35924 4.48044 4.62433 4.73036 4.86924 4.91876 5.15900 5.16705 5.27954 5.33721 5.40648 5.56368 5.68505 5.78218 5.82417 5.93562 6.15176 6.20239 6.23959 6.28924 6.34238 6.37514 6.47704 6.58863 6.79367 7.16684 7.18393 7.41770 7.50992 7.59818 7.79850 8.17028 8.35599 8.48574 8.99028 9.57692 11.02546 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.003333 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.595883 B = 8398.131302 C = 8730.460171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.040 0.960 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.152 3.848 15 H 0.052 0.948 16 C -0.023 4.023 17 C -0.117 4.117 18 C 0.100 3.900 19 N -0.452 5.452 20 C 0.030 3.970 21 C 0.524 3.476 22 F -0.173 7.173 23 F -0.167 7.167 24 F -0.172 7.172 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.169 4.169 28 C -0.190 4.190 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.024 0.976 32 H 0.094 0.906 33 H 0.008 0.992 34 H 0.259 0.741 35 H 0.330 0.670 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 1.460 15.450 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.304 5.304 14 C 0.042 3.958 15 H 0.070 0.930 16 C -0.032 4.032 17 C -0.137 4.137 18 C -0.058 4.058 19 N -0.161 5.161 20 C -0.108 4.108 21 C 0.468 3.532 22 F -0.155 7.155 23 F -0.148 7.148 24 F -0.154 7.154 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.206 4.206 28 C -0.228 4.228 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.113 0.887 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.161 0.839 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.697 2.025 15.962 16.105 hybrid contribution -0.085 -0.852 -1.303 1.559 sum 0.612 1.173 14.659 14.719 Atomic orbital electron populations 1.21598 0.97668 0.98834 1.00665 1.22133 0.95040 1.01202 1.00277 1.19272 0.96490 0.88363 0.84910 0.94164 1.21034 1.30586 1.11517 0.89525 0.91958 1.24893 0.95501 0.95130 0.98721 1.69881 1.38923 1.23920 1.20665 0.86539 0.78969 0.79880 0.82610 1.19765 1.21214 1.21267 1.60961 1.03108 1.63236 1.03080 1.20021 0.92649 0.96735 0.86394 0.92972 1.20584 0.93988 0.92694 0.95918 1.22419 0.94853 0.97932 0.98465 1.22802 0.97983 0.96555 0.88446 1.67121 1.12089 1.02149 1.34776 1.20733 0.99861 0.97291 0.92954 1.17900 0.74630 0.79041 0.81580 1.93225 1.56164 1.87791 1.78294 1.93219 1.51716 1.96086 1.73771 1.93212 1.92800 1.42716 1.86646 1.21740 0.99764 1.00348 0.92200 1.22201 0.88311 1.00885 1.02655 1.22941 0.99635 1.01576 0.96454 1.22954 1.03979 1.02919 0.92925 0.95608 0.91093 0.95714 0.88726 0.97281 0.93136 0.85121 0.82488 0.81484 0.83945 0.86771 0.88947 0.88825 0.89149 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.40 37.16 0.35 -2.27 16 2 C -0.15 -3.20 5.49 -26.73 -0.15 -3.35 16 3 C 0.22 4.82 2.14 -68.87 -0.15 4.67 16 4 H 0.04 1.00 7.45 -51.93 -0.39 0.61 16 5 C -0.49 -12.18 7.25 -34.44 -0.25 -12.43 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.50 5.28 -17.82 -0.09 1.41 16 8 N -0.89 -23.99 11.38 55.43 0.63 -23.35 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -12.18 5.48 -102.17 -0.56 -12.74 16 14 C 0.15 2.35 2.29 -68.86 -0.16 2.19 16 15 H 0.05 0.87 6.80 -51.93 -0.35 0.51 16 16 C -0.02 -0.31 4.39 -104.32 -0.46 -0.77 16 17 C -0.12 -1.40 9.16 -39.44 -0.36 -1.76 16 18 C 0.10 1.12 11.18 -17.55 -0.20 0.93 16 19 N -0.45 -6.01 9.97 -9.47 -0.09 -6.10 16 20 C 0.03 0.40 6.29 -82.59 -0.52 -0.12 16 21 C 0.52 6.60 3.43 36.00 0.12 6.73 16 22 F -0.17 -2.17 17.30 2.25 0.04 -2.13 16 23 F -0.17 -2.21 17.04 2.25 0.04 -2.17 16 24 F -0.17 -2.11 16.44 2.25 0.04 -2.07 16 25 C -0.12 -1.53 8.70 -39.44 -0.34 -1.88 16 26 C -0.12 -1.80 5.05 -90.62 -0.46 -2.25 16 27 C -0.17 -2.42 10.04 -26.75 -0.27 -2.69 16 28 C -0.19 -2.39 9.87 -26.76 -0.26 -2.65 16 29 H 0.02 0.46 6.64 -51.93 -0.34 0.11 16 30 H 0.07 1.57 6.85 -51.93 -0.36 1.21 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 2.36 6.22 -51.93 -0.32 2.03 16 33 H 0.01 0.17 7.40 -51.93 -0.38 -0.21 16 34 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.33 5.82 5.98 -39.29 -0.24 5.59 16 36 H 0.16 1.80 7.80 -52.49 -0.41 1.39 16 37 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.14 1.65 7.60 -52.49 -0.40 1.26 16 39 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.04 7.73 -51.93 -0.40 0.64 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -26.34 363.70 -8.31 -34.65 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.67 Total: 7.30 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.19 Total: -14.24 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.02 Total: -42.19 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.11 Total: -6.37 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -26.34 -8.31 -34.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.889 kcal (2) G-P(sol) polarization free energy of solvation -26.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds