Wall clock time and date at job start Tue Mar 31 2020 15:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46957 * 2 1 4 4 H 1.09003 * 109.47018 * 185.15512 * 3 2 1 5 5 C 1.50698 * 109.46781 * 305.14992 * 3 2 1 6 6 H 1.07998 * 119.99936 * 120.00981 * 5 3 2 7 7 C 1.37877 * 120.00435 * 300.00088 * 5 3 2 8 8 N 1.31522 * 119.99810 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00217 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47201 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46939 * 119.99857 * 9 7 5 12 12 H 1.48494 * 109.47292 * 239.99971 * 9 7 5 13 13 N 1.46892 * 109.47200 * 65.15212 * 3 2 1 14 14 C 1.46903 * 111.00014 * 85.59516 * 13 3 2 15 15 H 1.09004 * 109.47003 * 323.52922 * 14 13 3 16 16 C 1.50706 * 109.47068 * 203.53332 * 14 13 3 17 17 C 1.38667 * 120.78712 * 320.02368 * 16 14 13 18 18 C 1.38181 * 119.16081 * 179.97438 * 17 16 14 19 19 N 1.31890 * 120.76848 * 0.02562 * 18 17 16 20 20 C 1.31856 * 121.72150 * 359.69029 * 19 18 17 21 21 C 1.50697 * 119.61845 * 180.28769 * 20 19 18 22 22 F 1.39900 * 109.47294 * 270.28602 * 21 20 19 23 23 F 1.39904 * 109.46888 * 30.28893 * 21 20 19 24 24 F 1.39898 * 109.46962 * 150.28406 * 21 20 19 25 25 C 1.38228 * 120.76410 * 0.57441 * 20 19 18 26 26 C 1.52998 * 109.47541 * 83.53458 * 14 13 3 27 27 C 1.53004 * 117.49572 * 248.62251 * 26 14 13 28 28 C 1.52997 * 117.49861 * 180.02562 * 26 14 13 29 29 H 1.09006 * 109.47120 * 294.81985 * 1 2 3 30 30 H 1.08997 * 109.47668 * 54.81920 * 1 2 3 31 31 H 1.08999 * 109.47300 * 174.82771 * 1 2 3 32 32 H 1.09002 * 109.47000 * 239.99810 * 2 1 3 33 33 H 1.09004 * 109.47108 * 119.99454 * 2 1 3 34 34 H 0.96992 * 119.99776 * 180.02562 * 8 7 5 35 35 H 1.00896 * 111.00184 * 321.63657 * 13 3 2 36 36 H 1.08002 * 120.42294 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.62022 * 179.97438 * 18 17 16 38 38 H 1.07996 * 120.41871 * 179.73306 * 25 20 19 39 39 H 1.09000 * 115.54766 * 34.32377 * 26 14 13 40 40 H 1.09001 * 117.49924 * 0.02562 * 27 26 14 41 41 H 1.09000 * 117.49397 * 145.01722 * 27 26 14 42 42 H 1.09004 * 117.49626 * 214.97833 * 28 26 14 43 43 H 1.08991 * 117.50144 * 359.97189 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0923 5 6 1.4361 2.1887 -1.1617 6 1 0.8270 3.0627 -0.9843 7 6 1.6614 1.7558 -2.4512 8 7 2.4029 0.6912 -2.6674 9 14 0.9135 2.6812 -3.8913 10 1 0.1280 3.8348 -3.3841 11 1 1.9968 3.1730 -4.7800 12 1 0.0216 1.7718 -4.6546 13 7 1.6545 2.0982 1.2567 14 6 2.6392 1.8309 2.3136 15 1 3.0157 0.8131 2.2104 16 6 1.9848 1.9900 3.6618 17 6 1.0813 3.0156 3.8955 18 6 0.5007 3.1299 5.1443 19 7 0.7975 2.2785 6.1068 20 6 1.6477 1.2883 5.9187 21 6 1.9474 0.3390 7.0500 22 9 3.0277 0.8259 7.7937 23 9 0.8240 0.2291 7.8766 24 9 2.2686 -0.9194 6.5301 25 6 2.2717 1.1144 4.6976 26 6 3.8005 2.8193 2.1905 27 6 5.1591 2.2628 1.7596 28 6 4.9376 2.7033 3.2076 29 1 -0.3634 0.4314 0.9328 30 1 -0.3634 0.5921 -0.8399 31 1 -0.3634 -1.0235 -0.0926 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.5616 0.3869 -3.5746 35 1 0.7298 1.8144 1.5438 36 1 0.8344 3.7163 3.1116 37 1 -0.2037 3.9262 5.3346 38 1 2.9703 0.3041 4.5510 39 1 3.5331 3.8182 1.8458 40 1 5.2254 1.1927 1.5634 41 1 5.7857 2.8957 1.1312 42 1 5.4186 3.6261 3.5321 43 1 4.8582 1.9232 3.9645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:36 Heat of formation + Delta-G solvation = -105.027380 kcal Electronic energy + Delta-G solvation = -28736.306079 eV Core-core repulsion = 24366.634717 eV Total energy + Delta-G solvation = -4369.671362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.24902 -48.78343 -48.70944 -41.65574 -39.31973 -37.30187 -34.96881 -33.58506 -33.18350 -31.75518 -28.66052 -27.77621 -26.51288 -25.09289 -24.35868 -23.47011 -23.07885 -21.68602 -20.68834 -19.62596 -19.53573 -19.28554 -18.09491 -17.51829 -17.18862 -16.73743 -16.58811 -16.16060 -15.87592 -15.62332 -15.47813 -15.25023 -15.16095 -15.14884 -14.87699 -14.86602 -14.75684 -14.34801 -14.29682 -13.90618 -13.72711 -13.53456 -12.83424 -12.71310 -12.68735 -12.58400 -12.42143 -12.38106 -11.93972 -11.70385 -11.43666 -11.23400 -11.10830 -10.94097 -10.71275 -10.60010 -10.44694 -10.37996 -9.00899 -8.01751 -6.08175 -0.32448 0.02839 1.38854 1.43455 1.48086 1.57053 2.40488 2.44331 2.48590 2.75802 2.92870 3.28642 3.30514 3.35717 3.61909 3.62768 3.86514 3.94300 4.02856 4.09937 4.22334 4.36036 4.48294 4.53656 4.55710 4.59935 4.71330 4.74519 4.78769 4.81404 5.03778 5.10711 5.18142 5.25136 5.31868 5.44184 5.45175 5.50624 5.71150 5.77886 5.87819 6.35482 6.57057 6.67234 6.82677 7.03638 7.59074 9.03897 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.003333 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.595883 B = 8398.131302 C = 8730.460171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.141 4.141 3 C 0.227 3.773 4 H 0.010 0.990 5 C -0.491 4.491 6 H 0.056 0.944 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.668 5.668 14 C 0.160 3.840 15 H 0.039 0.961 16 C -0.032 4.032 17 C -0.113 4.113 18 C 0.108 3.892 19 N -0.467 5.467 20 C 0.023 3.977 21 C 0.527 3.473 22 F -0.173 7.173 23 F -0.171 7.171 24 F -0.171 7.171 25 C -0.120 4.120 26 C -0.136 4.136 27 C -0.183 4.183 28 C -0.160 4.160 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.256 0.744 35 H 0.334 0.666 36 H 0.163 0.837 37 H 0.202 0.798 38 H 0.150 0.850 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 2.384 16.851 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.181 4.181 3 C 0.119 3.881 4 H 0.028 0.972 5 C -0.530 4.530 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.772 3.228 10 H -0.191 1.191 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.300 5.300 14 C 0.050 3.950 15 H 0.057 0.943 16 C -0.040 4.040 17 C -0.133 4.133 18 C -0.049 4.049 19 N -0.176 5.176 20 C -0.115 4.115 21 C 0.472 3.528 22 F -0.154 7.154 23 F -0.152 7.152 24 F -0.152 7.152 25 C -0.140 4.140 26 C -0.155 4.155 27 C -0.221 4.221 28 C -0.198 4.198 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.153 0.847 36 H 0.181 0.819 37 H 0.219 0.781 38 H 0.168 0.832 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.102 2.953 17.382 17.632 hybrid contribution 0.175 -1.119 -1.692 2.036 sum 0.072 1.834 15.690 15.797 Atomic orbital electron populations 1.21484 0.96132 0.99465 1.00831 1.21996 0.96331 1.00575 0.99213 1.18934 0.94357 0.88666 0.86170 0.97213 1.21285 1.29929 1.11199 0.90564 0.92589 1.25511 0.96053 0.95828 1.00889 1.70011 1.40187 1.25141 1.20760 0.85707 0.78120 0.78933 0.80046 1.19134 1.21488 1.21313 1.60794 1.03915 1.62620 1.02644 1.19890 0.92240 0.96156 0.86753 0.94328 1.20366 0.94909 0.93842 0.94880 1.22523 0.94281 0.97409 0.99068 1.23317 0.97617 0.96501 0.87476 1.67185 1.12340 1.02549 1.35568 1.20786 1.00141 0.97571 0.93044 1.17851 0.74484 0.79052 0.81459 1.93225 1.56123 1.87797 1.78304 1.93208 1.51989 1.96112 1.73910 1.93215 1.92771 1.42638 1.86603 1.21766 0.99901 1.00402 0.91960 1.22148 0.88525 1.00217 1.04614 1.22954 0.99724 1.01013 0.98365 1.22986 1.01384 1.03588 0.91816 0.93389 0.93304 0.94414 0.92048 0.96022 0.93457 0.84669 0.81894 0.78134 0.83192 0.87706 0.89998 0.88795 0.87423 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.40 71.98 0.68 -4.10 16 2 C -0.14 -6.19 5.49 30.59 0.17 -6.02 16 3 C 0.23 10.19 2.14 44.17 0.09 10.29 16 4 H 0.01 0.51 7.45 -2.39 -0.02 0.49 16 5 C -0.49 -24.65 7.25 25.60 0.19 -24.47 16 6 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.02 0.79 5.28 84.65 0.45 1.24 16 8 N -0.92 -50.41 11.38 21.45 0.24 -50.17 16 9 Si 0.94 42.02 29.54 68.60 2.03 44.05 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.67 -23.82 5.48 -477.15 -2.62 -26.44 16 14 C 0.16 4.81 2.29 44.17 0.10 4.91 16 15 H 0.04 1.28 6.80 -2.39 -0.02 1.26 16 16 C -0.03 -0.79 4.39 -19.67 -0.09 -0.87 16 17 C -0.11 -2.44 9.16 22.36 0.20 -2.23 16 18 C 0.11 2.11 11.18 84.67 0.95 3.06 16 19 N -0.47 -11.25 9.97 -183.88 -1.83 -13.08 16 20 C 0.02 0.55 6.29 42.55 0.27 0.82 16 21 C 0.53 12.44 3.43 71.23 0.24 12.69 16 22 F -0.17 -4.06 17.30 44.97 0.78 -3.28 16 23 F -0.17 -4.27 17.04 44.97 0.77 -3.50 16 24 F -0.17 -3.93 16.44 44.97 0.74 -3.19 16 25 C -0.12 -2.85 8.70 22.36 0.19 -2.65 16 26 C -0.14 -3.94 5.05 -10.79 -0.05 -3.99 16 27 C -0.18 -5.24 10.04 30.58 0.31 -4.94 16 28 C -0.16 -3.76 9.87 30.58 0.30 -3.46 16 29 H 0.05 1.64 6.64 -2.38 -0.02 1.62 16 30 H 0.05 2.13 6.85 -2.39 -0.02 2.11 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 3.12 6.22 -2.39 -0.01 3.11 16 33 H 0.02 0.86 7.40 -2.39 -0.02 0.84 16 34 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 35 H 0.33 11.33 5.98 -89.70 -0.54 10.80 16 36 H 0.16 3.33 7.80 -2.91 -0.02 3.31 16 37 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.15 3.26 7.60 -2.91 -0.02 3.24 16 39 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 41 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.09 2.08 7.73 -2.39 -0.02 2.06 16 Total: -1.00 -56.25 363.70 4.61 -51.64 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.51 Total: 23.71 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.00 Total: -19.73 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -4.21 Total: -89.69 kcal Atomic # 9 Polarization: -12.26 SS G_CDS: 2.28 Total: -9.98 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -56.25 4.61 -51.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.386 kcal (2) G-P(sol) polarization free energy of solvation -56.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds