Wall clock time and date at job start Tue Mar 31 2020 15:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 H 1.09005 * 109.46604 * 305.48325 * 3 2 1 5 5 C 1.50693 * 109.47378 * 185.48795 * 3 2 1 6 6 H 1.07999 * 120.00123 * 240.00205 * 5 3 2 7 7 C 1.37874 * 120.00307 * 59.99444 * 5 3 2 8 8 N 1.31515 * 120.00170 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00030 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47406 * 270.00293 * 9 7 5 11 11 H 1.48498 * 109.46761 * 30.00169 * 9 7 5 12 12 H 1.48499 * 109.47098 * 149.99714 * 9 7 5 13 13 N 1.46902 * 109.47485 * 65.48172 * 3 2 1 14 14 C 1.46891 * 111.00312 * 204.68743 * 13 3 2 15 15 H 1.09007 * 109.47518 * 327.61317 * 14 13 3 16 16 C 1.50700 * 109.47233 * 207.60925 * 14 13 3 17 17 C 1.38660 * 120.79177 * 319.99952 * 16 14 13 18 18 C 1.38181 * 119.16396 * 179.97438 * 17 16 14 19 19 N 1.31879 * 120.76940 * 0.02562 * 18 17 16 20 20 C 1.31859 * 121.72172 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.61618 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47144 * 4.99325 * 21 20 19 23 23 F 1.39893 * 109.47124 * 124.99698 * 21 20 19 24 24 F 1.39902 * 109.46720 * 244.99753 * 21 20 19 25 25 C 1.38227 * 120.76434 * 359.73630 * 20 19 18 26 26 C 1.53009 * 109.47271 * 87.60903 * 14 13 3 27 27 C 1.52992 * 117.49978 * 253.05407 * 26 14 13 28 28 C 1.52994 * 117.49963 * 184.43059 * 26 14 13 29 29 H 1.09007 * 109.47105 * 180.96906 * 1 2 3 30 30 H 1.08999 * 109.47103 * 300.96977 * 1 2 3 31 31 H 1.09005 * 109.47086 * 60.97010 * 1 2 3 32 32 H 1.09004 * 109.47376 * 239.99389 * 2 1 3 33 33 H 1.09008 * 109.46908 * 119.99878 * 2 1 3 34 34 H 0.97003 * 120.00486 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99697 * 328.64491 * 13 3 2 36 36 H 1.08002 * 120.41708 * 359.95468 * 17 16 14 37 37 H 1.08005 * 119.61670 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.41994 * 180.27204 * 25 20 19 39 39 H 1.09004 * 115.54723 * 38.75849 * 26 14 13 40 40 H 1.09003 * 117.50586 * 359.97438 * 27 26 14 41 41 H 1.09002 * 117.50356 * 145.01609 * 27 26 14 42 42 H 1.09001 * 117.49655 * 214.98384 * 28 26 14 43 43 H 1.08998 * 117.50030 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5987 1.9838 -0.8369 5 6 3.5408 1.4447 -0.1359 6 1 4.1523 1.8870 0.6366 7 6 4.1334 0.8818 -1.2463 8 7 5.4432 0.8833 -1.3646 9 14 3.0758 0.1172 -2.5828 10 1 2.8563 -1.3198 -2.2789 11 1 1.7671 0.8167 -2.6391 12 1 3.7631 0.2468 -3.8927 13 7 1.6614 2.0958 1.2601 14 6 1.5885 3.5537 1.0961 15 1 2.3248 3.8737 0.3587 16 6 1.8755 4.2226 2.4156 17 6 1.3741 3.7024 3.5991 18 6 1.6586 4.3427 4.7900 19 7 2.3964 5.4356 4.8090 20 6 2.8897 5.9584 3.7035 21 6 3.7276 7.2086 3.7802 22 9 3.9313 7.5519 5.1210 23 9 4.9628 6.9807 3.1643 24 9 3.0663 8.2539 3.1265 25 6 2.6520 5.3695 2.4757 26 6 0.1876 3.9441 0.6204 27 6 0.0337 4.3855 -0.8364 28 6 -0.0612 5.4169 0.2896 29 1 -0.3634 -1.0276 0.0174 30 1 -0.3633 0.5288 0.8811 31 1 -0.3633 0.4987 -0.8986 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 5.8601 0.4877 -2.1460 35 1 0.7900 1.7273 1.6108 36 1 0.7686 2.8081 3.5901 37 1 1.2721 3.9436 5.7162 38 1 3.0624 5.8000 1.5742 39 1 -0.6336 3.3825 1.0659 40 1 0.9304 4.3983 -1.4560 41 1 -0.8889 4.1143 -1.3497 42 1 -1.0463 5.8244 0.5172 43 1 0.7729 6.1080 0.4112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:43 Heat of formation + Delta-G solvation = -84.161558 kcal Electronic energy + Delta-G solvation = -28853.987018 eV Core-core repulsion = 24485.220466 eV Total energy + Delta-G solvation = -4368.766552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.10120 -47.63556 -47.55501 -40.49848 -38.26926 -35.89851 -33.61120 -32.13867 -32.07622 -30.93520 -27.62701 -26.70974 -25.30114 -23.32118 -22.63724 -22.34866 -22.07510 -20.28934 -20.00577 -18.48914 -18.38394 -18.07283 -16.80755 -16.41811 -16.13424 -15.82283 -15.18642 -14.76742 -14.64055 -14.55040 -14.35274 -14.01683 -13.99895 -13.92368 -13.72745 -13.71385 -13.65547 -13.01484 -12.90102 -12.66867 -12.35291 -12.20430 -11.88435 -11.81516 -11.48020 -11.26895 -11.09339 -10.73274 -10.46529 -10.36553 -10.19941 -10.08488 -9.65991 -9.54816 -9.48411 -9.35820 -9.26025 -8.60334 -7.61873 -6.11129 -4.09458 0.80019 1.20210 2.52440 3.19095 3.28617 3.32316 3.50636 3.57164 3.80212 3.96469 4.32978 4.43348 4.51843 4.65294 4.81946 4.86338 4.99821 5.06488 5.10554 5.16165 5.17381 5.34149 5.48201 5.58100 5.61974 5.68449 5.72360 5.80205 5.87264 5.97135 5.97858 6.16540 6.21048 6.36268 6.36867 6.50872 6.54479 6.59078 6.71441 7.05325 7.60963 7.65684 7.75597 8.05212 8.63038 9.00642 9.50798 11.02009 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.003931 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.114429 B = 7120.294314 C = 7712.290581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.192 3.808 4 H 0.009 0.991 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.297 1.297 13 N -0.662 5.662 14 C 0.156 3.844 15 H 0.104 0.896 16 C 0.002 3.998 17 C -0.118 4.118 18 C 0.098 3.902 19 N -0.455 5.455 20 C 0.031 3.969 21 C 0.522 3.478 22 F -0.166 7.166 23 F -0.170 7.170 24 F -0.175 7.175 25 C -0.114 4.114 26 C -0.176 4.176 27 C -0.170 4.170 28 C -0.178 4.178 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.264 0.736 35 H 0.322 0.678 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.142 0.858 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 8.598 7.352 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.084 3.916 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.536 5.536 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.192 1.192 12 H -0.225 1.225 13 N -0.291 5.291 14 C 0.044 3.956 15 H 0.122 0.878 16 C -0.007 4.007 17 C -0.138 4.138 18 C -0.060 4.060 19 N -0.164 5.164 20 C -0.108 4.108 21 C 0.467 3.533 22 F -0.147 7.147 23 F -0.151 7.151 24 F -0.157 7.157 25 C -0.135 4.135 26 C -0.196 4.196 27 C -0.207 4.207 28 C -0.216 4.216 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.697 8.967 8.273 16.226 hybrid contribution -1.284 -0.784 -2.103 2.586 sum -11.981 8.184 6.170 15.766 Atomic orbital electron populations 1.21908 0.98156 1.00546 1.00701 1.22121 0.92951 1.00362 1.01948 1.19640 0.96858 0.89285 0.85814 0.97388 1.21005 0.88996 1.37941 1.06000 0.90177 1.24948 0.94710 0.95874 0.97728 1.69882 1.08853 1.45477 1.29367 0.86982 0.80746 0.79869 0.81375 1.20599 1.19182 1.22488 1.60632 1.35639 1.00549 1.32325 1.20092 0.93780 0.89905 0.91773 0.87804 1.20326 0.91863 0.91985 0.96499 1.22142 0.99157 1.00000 0.92481 1.22691 0.94381 0.90505 0.98417 1.67117 1.08317 1.11649 1.29282 1.20715 1.01785 0.96759 0.91492 1.17925 0.78177 0.83090 0.74105 1.93208 1.95079 1.92988 1.33448 1.93249 1.44326 1.94582 1.82985 1.93213 1.80778 1.60227 1.81456 1.21655 0.97865 0.96189 0.97800 1.23140 0.98908 0.98031 0.99531 1.23000 1.03483 1.03084 0.91125 1.22891 1.02701 0.91990 1.03990 0.93604 0.93293 0.93526 0.92687 0.91341 0.92639 0.85907 0.83916 0.81828 0.83993 0.87952 0.88194 0.89052 0.89131 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.76 37.16 0.36 -2.01 16 2 C -0.14 -2.65 5.02 -26.73 -0.13 -2.79 16 3 C 0.19 4.02 1.43 -68.87 -0.10 3.92 16 4 H 0.01 0.18 6.66 -51.93 -0.35 -0.16 16 5 C -0.50 -13.19 9.07 -34.44 -0.31 -13.50 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 8 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 9 Si 0.88 20.84 24.41 -169.99 -4.15 16.69 16 10 H -0.28 -6.49 6.83 56.52 0.39 -6.10 16 11 H -0.27 -5.96 6.53 56.52 0.37 -5.59 16 12 H -0.30 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.66 -11.43 5.49 -102.17 -0.56 -11.99 16 14 C 0.16 2.39 2.21 -68.86 -0.15 2.24 16 15 H 0.10 1.88 7.30 -51.93 -0.38 1.51 16 16 C 0.00 0.03 4.74 -104.32 -0.49 -0.47 16 17 C -0.12 -1.47 9.43 -39.45 -0.37 -1.84 16 18 C 0.10 1.18 11.18 -17.55 -0.20 0.99 16 19 N -0.45 -6.57 9.74 -9.47 -0.09 -6.67 16 20 C 0.03 0.46 6.26 -82.58 -0.52 -0.06 16 21 C 0.52 7.34 3.32 36.01 0.12 7.46 16 22 F -0.17 -2.40 16.85 2.25 0.04 -2.36 16 23 F -0.17 -2.49 17.15 2.25 0.04 -2.45 16 24 F -0.18 -2.32 17.28 2.25 0.04 -2.29 16 25 C -0.11 -1.65 9.22 -39.44 -0.36 -2.01 16 26 C -0.18 -2.24 5.01 -90.62 -0.45 -2.70 16 27 C -0.17 -2.16 10.03 -26.74 -0.27 -2.43 16 28 C -0.18 -2.03 9.99 -26.74 -0.27 -2.30 16 29 H 0.04 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.05 0.64 6.42 -51.93 -0.33 0.30 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 1.18 3.22 -51.93 -0.17 1.01 16 33 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.32 4.74 5.65 -39.29 -0.22 4.52 16 36 H 0.14 1.51 7.47 -52.49 -0.39 1.11 16 37 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.10 1.19 7.96 -51.93 -0.41 0.78 16 40 H 0.10 1.41 8.08 -51.93 -0.42 0.99 16 41 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -29.54 361.50 -7.37 -36.91 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.66 Total: 6.30 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -3.25 Total: -13.69 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.12 Total: -44.56 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.12 Total: -7.10 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.15 Total: 16.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.54 -7.37 -36.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.253 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds