Wall clock time and date at job start Tue Mar 31 2020 15:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47224 * 2 1 4 4 H 1.09005 * 109.46604 * 305.48325 * 3 2 1 5 5 C 1.50693 * 109.47378 * 185.48795 * 3 2 1 6 6 H 1.07999 * 120.00123 * 240.00205 * 5 3 2 7 7 C 1.37874 * 120.00307 * 59.99444 * 5 3 2 8 8 N 1.31515 * 120.00170 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00030 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47406 * 270.00293 * 9 7 5 11 11 H 1.48498 * 109.46761 * 30.00169 * 9 7 5 12 12 H 1.48499 * 109.47098 * 149.99714 * 9 7 5 13 13 N 1.46902 * 109.47485 * 65.48172 * 3 2 1 14 14 C 1.46891 * 111.00312 * 204.68743 * 13 3 2 15 15 H 1.09007 * 109.47518 * 327.61317 * 14 13 3 16 16 C 1.50700 * 109.47233 * 207.60925 * 14 13 3 17 17 C 1.38660 * 120.79177 * 319.99952 * 16 14 13 18 18 C 1.38181 * 119.16396 * 179.97438 * 17 16 14 19 19 N 1.31879 * 120.76940 * 0.02562 * 18 17 16 20 20 C 1.31859 * 121.72172 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.61618 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47144 * 4.99325 * 21 20 19 23 23 F 1.39893 * 109.47124 * 124.99698 * 21 20 19 24 24 F 1.39902 * 109.46720 * 244.99753 * 21 20 19 25 25 C 1.38227 * 120.76434 * 359.73630 * 20 19 18 26 26 C 1.53009 * 109.47271 * 87.60903 * 14 13 3 27 27 C 1.52992 * 117.49978 * 253.05407 * 26 14 13 28 28 C 1.52994 * 117.49963 * 184.43059 * 26 14 13 29 29 H 1.09007 * 109.47105 * 180.96906 * 1 2 3 30 30 H 1.08999 * 109.47103 * 300.96977 * 1 2 3 31 31 H 1.09005 * 109.47086 * 60.97010 * 1 2 3 32 32 H 1.09004 * 109.47376 * 239.99389 * 2 1 3 33 33 H 1.09008 * 109.46908 * 119.99878 * 2 1 3 34 34 H 0.97003 * 120.00486 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99697 * 328.64491 * 13 3 2 36 36 H 1.08002 * 120.41708 * 359.95468 * 17 16 14 37 37 H 1.08005 * 119.61670 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.41994 * 180.27204 * 25 20 19 39 39 H 1.09004 * 115.54723 * 38.75849 * 26 14 13 40 40 H 1.09003 * 117.50586 * 359.97438 * 27 26 14 41 41 H 1.09002 * 117.50356 * 145.01609 * 27 26 14 42 42 H 1.09001 * 117.49655 * 214.98384 * 28 26 14 43 43 H 1.08998 * 117.50030 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5987 1.9838 -0.8369 5 6 3.5408 1.4447 -0.1359 6 1 4.1523 1.8870 0.6366 7 6 4.1334 0.8818 -1.2463 8 7 5.4432 0.8833 -1.3646 9 14 3.0758 0.1172 -2.5828 10 1 2.8563 -1.3198 -2.2789 11 1 1.7671 0.8167 -2.6391 12 1 3.7631 0.2468 -3.8927 13 7 1.6614 2.0958 1.2601 14 6 1.5885 3.5537 1.0961 15 1 2.3248 3.8737 0.3587 16 6 1.8755 4.2226 2.4156 17 6 1.3741 3.7024 3.5991 18 6 1.6586 4.3427 4.7900 19 7 2.3964 5.4356 4.8090 20 6 2.8897 5.9584 3.7035 21 6 3.7276 7.2086 3.7802 22 9 3.9313 7.5519 5.1210 23 9 4.9628 6.9807 3.1643 24 9 3.0663 8.2539 3.1265 25 6 2.6520 5.3695 2.4757 26 6 0.1876 3.9441 0.6204 27 6 0.0337 4.3855 -0.8364 28 6 -0.0612 5.4169 0.2896 29 1 -0.3634 -1.0276 0.0174 30 1 -0.3633 0.5288 0.8811 31 1 -0.3633 0.4987 -0.8986 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 5.8601 0.4877 -2.1460 35 1 0.7900 1.7273 1.6108 36 1 0.7686 2.8081 3.5901 37 1 1.2721 3.9436 5.7162 38 1 3.0624 5.8000 1.5742 39 1 -0.6336 3.3825 1.0659 40 1 0.9304 4.3983 -1.4560 41 1 -0.8889 4.1143 -1.3497 42 1 -1.0463 5.8244 0.5172 43 1 0.7729 6.1080 0.4112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:42 Heat of formation + Delta-G solvation = -101.843137 kcal Electronic energy + Delta-G solvation = -28854.753749 eV Core-core repulsion = 24485.220466 eV Total energy + Delta-G solvation = -4369.533283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.24234 -48.77521 -48.70268 -41.57895 -39.46843 -37.27722 -34.85370 -34.07031 -33.13968 -32.20747 -29.27772 -27.84139 -26.69306 -24.36864 -24.20869 -23.37454 -23.11201 -21.66211 -21.39680 -19.62780 -19.52679 -19.21443 -18.77188 -17.59318 -17.28502 -16.96361 -16.44419 -16.34016 -15.79682 -15.71938 -15.50511 -15.38860 -15.16341 -15.12387 -14.87336 -14.86696 -14.78330 -14.73067 -14.18776 -13.91820 -13.64863 -13.56909 -13.39412 -12.91296 -12.73086 -12.52943 -12.45119 -12.31760 -12.13991 -11.72069 -11.48534 -11.30042 -11.17468 -11.09054 -10.74986 -10.62311 -10.58330 -10.38825 -9.06778 -8.25099 -6.26728 -0.26727 0.12951 1.30016 1.34952 1.41245 1.44793 2.32673 2.43902 2.47486 2.76167 2.89586 3.08751 3.29716 3.32153 3.64822 3.76654 3.78920 3.96184 3.99999 4.09488 4.11470 4.30405 4.33159 4.39464 4.41069 4.48573 4.58259 4.67961 4.77015 4.85776 4.94531 5.01074 5.11408 5.15716 5.17484 5.22381 5.24218 5.33594 5.49791 5.52920 5.75841 6.06304 6.46667 6.62241 6.81069 6.95812 7.38062 8.92309 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.003931 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.114429 B = 7120.294314 C = 7712.290581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.202 3.798 4 H 0.006 0.994 5 C -0.496 4.496 6 H 0.029 0.971 7 C 0.008 3.992 8 N -0.954 5.954 9 Si 0.945 3.055 10 H -0.268 1.268 11 H -0.241 1.241 12 H -0.306 1.306 13 N -0.667 5.667 14 C 0.161 3.839 15 H 0.063 0.937 16 C -0.012 4.012 17 C -0.111 4.111 18 C 0.104 3.896 19 N -0.472 5.472 20 C 0.020 3.980 21 C 0.524 3.476 22 F -0.168 7.168 23 F -0.177 7.177 24 F -0.171 7.171 25 C -0.126 4.126 26 C -0.176 4.176 27 C -0.180 4.180 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.342 0.658 36 H 0.169 0.831 37 H 0.204 0.796 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.636 7.880 8.172 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.093 3.907 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.595 5.595 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.165 1.165 12 H -0.235 1.235 13 N -0.299 5.299 14 C 0.051 3.949 15 H 0.082 0.918 16 C -0.021 4.021 17 C -0.131 4.131 18 C -0.054 4.054 19 N -0.181 5.181 20 C -0.118 4.118 21 C 0.469 3.531 22 F -0.149 7.149 23 F -0.159 7.159 24 F -0.152 7.152 25 C -0.147 4.147 26 C -0.196 4.196 27 C -0.216 4.216 28 C -0.201 4.201 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.164 0.836 36 H 0.186 0.814 37 H 0.220 0.780 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.651 8.268 9.116 19.134 hybrid contribution 0.006 -0.490 -2.236 2.289 sum -14.645 7.777 6.880 17.953 Atomic orbital electron populations 1.21838 0.94101 1.02437 1.02115 1.22008 0.96536 0.98157 1.00768 1.19335 0.93010 0.91024 0.87379 0.97672 1.21316 0.91982 1.35994 1.04181 0.95279 1.25800 0.95751 0.96829 1.00498 1.70065 1.11180 1.47803 1.30451 0.85911 0.79763 0.79576 0.77466 1.19457 1.16507 1.23457 1.60386 1.37219 1.01630 1.30621 1.19883 0.94676 0.88714 0.91658 0.91836 1.20305 0.92753 0.92213 0.96787 1.22424 0.98616 1.00375 0.91662 1.23348 0.92941 0.89311 0.99815 1.67177 1.09052 1.12755 1.29107 1.20722 1.02335 0.97065 0.91664 1.17912 0.77943 0.83281 0.73945 1.93197 1.95093 1.93019 1.33600 1.93233 1.44871 1.94653 1.83124 1.93215 1.80621 1.60045 1.81360 1.21691 0.98387 0.96798 0.97853 1.23050 0.97546 0.99406 0.99559 1.23018 1.03281 1.04229 0.91121 1.22934 1.03578 0.91175 1.02408 0.91596 0.90749 0.93214 0.94610 0.91908 0.92887 0.83643 0.81383 0.77974 0.84416 0.85530 0.90619 0.87213 0.86808 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.76 71.98 0.70 -3.11 16 2 C -0.14 -5.01 5.02 30.59 0.15 -4.86 16 3 C 0.20 8.28 1.43 44.17 0.06 8.35 16 4 H 0.01 0.24 6.66 -2.38 -0.02 0.22 16 5 C -0.50 -27.09 9.07 25.60 0.23 -26.86 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.43 5.45 84.65 0.46 0.89 16 8 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.95 43.48 24.41 68.60 1.67 45.16 16 10 H -0.27 -11.79 6.83 99.48 0.68 -11.11 16 11 H -0.24 -9.99 6.53 99.48 0.65 -9.34 16 12 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 13 N -0.67 -22.12 5.49 -477.16 -2.62 -24.74 16 14 C 0.16 4.88 2.21 44.17 0.10 4.98 16 15 H 0.06 2.43 7.30 -2.38 -0.02 2.41 16 16 C -0.01 -0.33 4.74 -19.67 -0.09 -0.42 16 17 C -0.11 -2.47 9.43 22.36 0.21 -2.26 16 18 C 0.10 2.21 11.18 84.67 0.95 3.16 16 19 N -0.47 -12.96 9.74 -183.88 -1.79 -14.75 16 20 C 0.02 0.58 6.26 42.55 0.27 0.85 16 21 C 0.52 14.88 3.32 71.24 0.24 15.12 16 22 F -0.17 -4.82 16.85 44.97 0.76 -4.07 16 23 F -0.18 -5.38 17.15 44.97 0.77 -4.60 16 24 F -0.17 -4.55 17.28 44.97 0.78 -3.77 16 25 C -0.13 -3.70 9.22 22.36 0.21 -3.49 16 26 C -0.18 -4.05 5.01 -10.80 -0.05 -4.11 16 27 C -0.18 -4.24 10.03 30.59 0.31 -3.94 16 28 C -0.16 -3.39 9.99 30.59 0.31 -3.08 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.07 1.53 6.42 -2.39 -0.02 1.52 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.04 1.45 3.22 -2.39 -0.01 1.44 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.34 8.87 5.65 -89.69 -0.51 8.37 16 36 H 0.17 2.83 7.47 -2.91 -0.02 2.81 16 37 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 38 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 39 H 0.13 2.35 7.96 -2.39 -0.02 2.34 16 40 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 Total: -1.00 -68.05 361.50 4.37 -63.68 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.46 Total: 21.10 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.04 Total: -18.79 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -4.11 Total: -98.71 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 2.31 Total: -12.44 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.67 Total: 45.16 kcal Total: -68.05 4.37 -63.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.164 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds