Wall clock time and date at job start Tue Mar 31 2020 15:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47241 * 2 1 4 4 H 1.09005 * 109.47440 * 304.38763 * 3 2 1 5 5 C 1.50695 * 109.47568 * 184.38554 * 3 2 1 6 6 H 1.08000 * 119.99998 * 268.87865 * 5 3 2 7 7 C 1.37878 * 120.00224 * 88.59037 * 5 3 2 8 8 N 1.31508 * 120.00360 * 184.75264 * 7 5 3 9 9 Si 1.86807 * 119.99634 * 4.75950 * 7 5 3 10 10 H 1.48502 * 109.47186 * 88.67729 * 9 7 5 11 11 H 1.48499 * 109.46799 * 208.67615 * 9 7 5 12 12 H 1.48494 * 109.47090 * 328.67671 * 9 7 5 13 13 N 1.46906 * 109.47009 * 64.38585 * 3 2 1 14 14 C 1.46908 * 110.99836 * 256.41721 * 13 3 2 15 15 H 1.09000 * 109.47072 * 37.99897 * 14 13 3 16 16 C 1.50698 * 109.46755 * 157.99782 * 14 13 3 17 17 C 1.38667 * 120.79058 * 39.99761 * 16 14 13 18 18 C 1.38188 * 119.16061 * 179.97438 * 17 16 14 19 19 N 1.31880 * 120.76703 * 0.02562 * 18 17 16 20 20 C 1.31857 * 121.72758 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.62018 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47172 * 5.00064 * 21 20 19 23 23 F 1.39902 * 109.47103 * 124.99687 * 21 20 19 24 24 F 1.39900 * 109.47028 * 244.99578 * 21 20 19 25 25 C 1.38229 * 120.75954 * 359.73972 * 20 19 18 26 26 C 1.52999 * 109.46898 * 277.99452 * 14 13 3 27 27 C 1.53002 * 117.49923 * 248.74478 * 26 14 13 28 28 C 1.52999 * 117.49635 * 180.08906 * 26 14 13 29 29 H 1.08999 * 109.47491 * 57.18612 * 1 2 3 30 30 H 1.09007 * 109.47489 * 177.18197 * 1 2 3 31 31 H 1.08998 * 109.47265 * 297.18067 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00091 * 2 1 3 33 33 H 1.09002 * 109.46989 * 120.00492 * 2 1 3 34 34 H 0.97004 * 120.00331 * 180.02562 * 8 7 5 35 35 H 1.00898 * 110.99823 * 20.36548 * 13 3 2 36 36 H 1.07990 * 120.42108 * 359.95608 * 17 16 14 37 37 H 1.07999 * 119.61303 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.41683 * 180.27091 * 25 20 19 39 39 H 1.08996 * 115.55231 * 34.42296 * 26 14 13 40 40 H 1.08995 * 117.49641 * 0.02562 * 27 26 14 41 41 H 1.08998 * 117.49390 * 145.02078 * 27 26 14 42 42 H 1.08994 * 117.50082 * 214.98420 * 28 26 14 43 43 H 1.09002 * 117.49612 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6139 1.9785 -0.8481 5 6 3.5430 1.4439 -0.1086 6 1 4.1491 1.4389 0.7853 7 6 4.1446 1.4456 -1.3493 8 7 5.4528 1.3526 -1.4459 9 14 3.1012 1.5804 -2.8929 10 1 2.9013 3.0123 -3.2318 11 1 3.7901 0.8972 -4.0171 12 1 1.7830 0.9388 -2.6569 13 7 1.6387 2.1037 1.2489 14 6 0.5065 3.0122 1.0233 15 1 -0.1793 2.5662 0.3030 16 6 -0.2155 3.2478 2.3250 17 6 0.4891 3.4109 3.5081 18 6 -0.2072 3.6256 4.6823 19 7 -1.5250 3.6755 4.6857 20 6 -2.2275 3.5247 3.5800 21 6 -3.7319 3.5911 3.6385 22 9 -4.1337 3.9308 4.9348 23 9 -4.1913 4.5593 2.7392 24 9 -4.2673 2.3449 3.2958 25 6 -1.5997 3.3124 2.3670 26 6 1.0231 4.3452 0.4782 27 6 0.9169 5.5698 1.3892 28 6 -0.0096 5.4336 0.1784 29 1 -0.3634 0.5569 -0.8637 30 1 -0.3634 -1.0265 -0.0505 31 1 -0.3634 0.4694 0.9142 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.8761 1.3542 -2.3187 35 1 1.4211 1.4253 1.9635 36 1 1.5682 3.3703 3.5119 37 1 0.3342 3.7540 5.6079 38 1 -2.1803 3.1939 1.4641 39 1 1.8907 4.2801 -0.1783 40 1 0.4794 5.4257 2.3771 41 1 1.7145 6.3104 1.3318 42 1 0.1788 6.0847 -0.6752 43 1 -1.0570 5.1998 0.3691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:50 Heat of formation + Delta-G solvation = -86.281039 kcal Electronic energy + Delta-G solvation = -29050.421963 eV Core-core repulsion = 24681.563503 eV Total energy + Delta-G solvation = -4368.858460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.31161 -47.85245 -47.75799 -40.89782 -38.18954 -36.00625 -33.38793 -32.32838 -32.14643 -30.79660 -27.89413 -26.85362 -25.21276 -23.77163 -22.66587 -22.46197 -22.09652 -20.24977 -19.56170 -18.70433 -18.58324 -18.12481 -17.07607 -16.50426 -16.19191 -15.77701 -15.30936 -15.01103 -14.75777 -14.56529 -14.49699 -14.22854 -14.09293 -13.93105 -13.92390 -13.91226 -13.42030 -13.13020 -12.98220 -12.88704 -12.66556 -12.00189 -11.93723 -11.77003 -11.46650 -11.30317 -10.99174 -10.82087 -10.53619 -10.23690 -10.03227 -9.98083 -9.87636 -9.74377 -9.68535 -9.53439 -9.27983 -8.58315 -7.57283 -6.11565 -4.08470 0.55975 0.91767 2.30339 3.20471 3.28426 3.29239 3.31394 3.35721 3.70319 3.97304 4.21635 4.34788 4.41659 4.48410 4.60544 4.75567 4.84599 5.02273 5.07726 5.17396 5.22396 5.32738 5.45536 5.61278 5.65143 5.73179 5.74032 5.75384 5.82853 5.88886 6.05524 6.13581 6.25150 6.28917 6.35118 6.39014 6.58225 6.65129 6.73835 7.03552 7.44145 7.63127 7.75342 8.12892 8.59498 9.00296 9.51235 11.01882 Molecular weight = 328.15amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.003659 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.538154 B = 7651.070800 C = 7878.128235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.146 4.146 3 C 0.188 3.812 4 H 0.033 0.967 5 C -0.489 4.489 6 H 0.079 0.921 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.865 3.135 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.659 5.659 14 C 0.151 3.849 15 H 0.057 0.943 16 C -0.028 4.028 17 C -0.113 4.113 18 C 0.098 3.902 19 N -0.449 5.449 20 C 0.031 3.969 21 C 0.522 3.478 22 F -0.164 7.164 23 F -0.173 7.173 24 F -0.173 7.173 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.179 4.179 28 C -0.190 4.190 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.263 0.737 35 H 0.329 0.671 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.434 5.240 8.309 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C 0.080 3.920 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.692 3.308 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.290 5.290 14 C 0.041 3.959 15 H 0.074 0.926 16 C -0.037 4.037 17 C -0.133 4.133 18 C -0.059 4.059 19 N -0.158 5.158 20 C -0.108 4.108 21 C 0.467 3.533 22 F -0.145 7.145 23 F -0.155 7.155 24 F -0.154 7.154 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.216 4.216 28 C -0.228 4.228 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.179 0.821 37 H 0.187 0.813 38 H 0.159 0.841 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.276 5.860 8.903 18.627 hybrid contribution -0.998 -0.686 -1.887 2.242 sum -16.274 5.175 7.016 18.462 Atomic orbital electron populations 1.21971 0.98629 1.00509 1.00342 1.22462 0.92487 1.01565 1.02079 1.19736 0.96842 0.88374 0.87030 0.94869 1.20879 0.88555 1.49294 0.94031 0.90293 1.24942 0.94637 0.94960 0.98488 1.69881 1.08806 1.50633 1.24363 0.87072 0.81182 0.78675 0.83851 1.20269 1.21458 1.18890 1.60950 1.33435 1.23098 1.11537 1.20138 0.91555 0.94150 0.90077 0.92571 1.20549 0.92322 0.93877 0.96905 1.22483 1.03476 0.95360 0.91985 1.22840 0.88345 0.95951 0.98798 1.67154 1.09340 1.10750 1.28564 1.20737 0.92625 1.05809 0.91663 1.17917 0.87303 0.73925 0.74145 1.93220 1.91882 1.92043 1.37388 1.93226 1.90296 1.63736 1.68207 1.93232 1.87787 1.42292 1.92140 1.21692 0.95455 0.99066 0.97924 1.22317 1.00957 0.88248 1.02636 1.23049 1.02357 1.01217 0.94943 1.22990 0.96215 1.03473 1.00116 0.93567 0.93708 0.93935 0.91997 0.92359 0.92673 0.85321 0.82140 0.81350 0.84074 0.85842 0.89277 0.88922 0.88862 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.73 37.16 0.32 -2.13 16 2 C -0.15 -2.77 4.93 -26.73 -0.13 -2.90 16 3 C 0.19 3.88 1.45 -68.87 -0.10 3.78 16 4 H 0.03 0.72 4.88 -51.93 -0.25 0.46 16 5 C -0.49 -12.59 9.19 -34.44 -0.32 -12.90 16 6 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.26 13.96 55.43 0.77 -25.49 16 9 Si 0.86 20.20 26.45 -169.99 -4.50 15.70 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.26 -5.82 6.29 56.52 0.36 -5.47 16 13 N -0.66 -11.34 5.29 -102.17 -0.54 -11.88 16 14 C 0.15 2.22 1.76 -68.86 -0.12 2.09 16 15 H 0.06 0.85 6.35 -51.93 -0.33 0.52 16 16 C -0.03 -0.35 3.18 -104.32 -0.33 -0.68 16 17 C -0.11 -1.29 7.44 -39.44 -0.29 -1.59 16 18 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16 19 N -0.45 -5.67 9.74 -9.47 -0.09 -5.76 16 20 C 0.03 0.38 6.26 -82.59 -0.52 -0.13 16 21 C 0.52 6.28 3.32 36.00 0.12 6.40 16 22 F -0.16 -2.09 16.85 2.25 0.04 -2.05 16 23 F -0.17 -2.02 17.15 2.25 0.04 -1.98 16 24 F -0.17 -2.08 17.28 2.25 0.04 -2.04 16 25 C -0.12 -1.44 8.85 -39.44 -0.35 -1.79 16 26 C -0.12 -1.86 5.71 -90.62 -0.52 -2.37 16 27 C -0.18 -2.34 9.51 -26.70 -0.25 -2.60 16 28 C -0.19 -2.44 10.02 -26.70 -0.27 -2.70 16 29 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.04 0.61 6.76 -51.93 -0.35 0.26 16 32 H 0.06 1.27 7.25 -51.93 -0.38 0.89 16 33 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.33 5.27 7.22 -39.29 -0.28 4.98 16 36 H 0.16 1.83 7.80 -52.49 -0.41 1.42 16 37 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.12 2.24 8.05 -51.93 -0.42 1.83 16 40 H 0.09 1.13 5.40 -51.93 -0.28 0.85 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.04 7.70 -51.93 -0.40 0.64 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -28.11 358.69 -7.54 -35.65 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.66 Total: 7.29 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -3.05 Total: -14.85 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.14 Total: -43.13 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.12 Total: -6.07 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.50 Total: 15.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.11 -7.54 -35.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.633 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds